Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:58:41 (3217976): wrapper (7.7.26015): starting
17:58:41 (3217976): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 17:58:41] Arguments: --nthreads 3
[2025-10-12 17:58:41] Threads: 3
[2025-10-12 17:58:41] Checking for CVMFS
[2025-10-12 17:58:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 17:58:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 17:58:41] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 17:58:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 17:58:41] 2.9.2.0 1842130 4518 86404 151625 2 57 29654163 36864000 0 130560 0 3610485 99.991 154954 906 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 17:58:41] CVMFS is ok
[2025-10-12 17:58:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 17:58:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 17:58:41] Further information can be found at the LHC@home message board.
[2025-10-12 17:58:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 17:58:41] Checking for apptainer binary...
[2025-10-12 17:58:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 17:58:41] Running /usr/bin/apptainer --version
[2025-10-12 17:58:41] apptainer version 1.4.1-1.1
[2025-10-12 17:58:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 17:58:41] thA335a
[2025-10-12 17:58:41] apptainer works
[2025-10-12 17:58:41] Set ATHENA_PROC_NUMBER=3
[2025-10-12 17:58:41] Set ATHENA_CORE_NUMBER=3
[2025-10-12 17:58:41] Starting ATLAS job with PandaID=6837379075
[2025-10-12 17:58:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 19:20:05]  *** The last 200 lines of the pilot log: ***
[2025-10-12 19:20:05] 2025-10-12 17:19:34,051 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 19:20:05] 2025-10-12 17:19:34,053 | INFO     | did not find any defunct processes belonging to 3228137
[2025-10-12 19:20:05] 2025-10-12 17:19:34,054 | INFO     | did not find any defunct processes belonging to 3228137
[2025-10-12 19:20:05] 2025-10-12 17:19:34,054 | INFO     | ready for new job
[2025-10-12 19:20:05] 2025-10-12 17:19:34,054 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 19:20:05] 2025-10-12 17:19:34,054 | INFO     | ***************************************
[2025-10-12 19:20:05] 2025-10-12 17:19:34,054 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 19:20:05] 2025-10-12 17:19:34,055 | INFO     | ***************************************
[2025-10-12 19:20:05] 2025-10-12 17:19:34,055 | INFO     | 
[2025-10-12 19:20:05] 2025-10-12 17:19:34,055 | INFO     | architecture information:
[2025-10-12 19:20:05] 2025-10-12 17:19:34,055 | INFO     | executing command: cat /etc/os-release
[2025-10-12 19:20:05] 2025-10-12 17:19:34,064 | INFO     | cat /etc/os-release:
[2025-10-12 19:20:05] NAME="CentOS Linux"
[2025-10-12 19:20:05] VERSION="7 (Core)"
[2025-10-12 19:20:05] ID="centos"
[2025-10-12 19:20:05] ID_LIKE="rhel fedora"
[2025-10-12 19:20:05] VERSION_ID="7"
[2025-10-12 19:20:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 19:20:05] ANSI_COLOR="0;31"
[2025-10-12 19:20:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 19:20:05] HOME_URL="https://www.centos.org/"
[2025-10-12 19:20:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 19:20:05] 
[2025-10-12 19:20:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 19:20:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 19:20:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 19:20:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 19:20:05] 
[2025-10-12 19:20:05] 2025-10-12 17:19:34,064 | INFO     | ***************************************
[2025-10-12 19:20:05] 2025-10-12 17:19:34,567 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 19:20:05] 2025-10-12 17:19:34,581 | INFO     | sufficient remaining disk space (375009574912 B)
[2025-10-12 19:20:05] 2025-10-12 17:19:34,581 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 19:20:05] 2025-10-12 17:19:34,581 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 19:20:05] 2025-10-12 17:19:34,581 | INFO     | update_server=False
[2025-10-12 19:20:05] 2025-10-12 17:19:34,581 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 19:20:05] 2025-10-12 17:19:34,582 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:20:05] 2025-10-12 17:19:34,615 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:20:05] 2025-10-12 17:19:34,616 | INFO     | aborting loop
[2025-10-12 19:20:05] 2025-10-12 17:19:34,727 | INFO     | all data control threads have been joined
[2025-10-12 19:20:05] 2025-10-12 17:19:34,931 | INFO     | all job control threads have been joined
[2025-10-12 19:20:05] 2025-10-12 17:19:35,585 | INFO     | [job] queue monitor thread has finished
[2025-10-12 19:20:05] 2025-10-12 17:19:35,587 | INFO     | [job] retrieve thread has finished
[2025-10-12 19:20:05] 2025-10-12 17:19:35,621 | INFO     | [job] job monitor thread has finished
[2025-10-12 19:20:05] 2025-10-12 17:19:35,671 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 19:20:05] 2025-10-12 17:19:35,733 | INFO     | [data] control thread has finished
[2025-10-12 19:20:05] 2025-10-12 17:19:35,920 | INFO     | all payload control threads have been joined
[2025-10-12 19:20:05] 2025-10-12 17:19:35,936 | INFO     | [job] control thread has finished
[2025-10-12 19:20:05] 2025-10-12 17:19:35,963 | INFO     | [data] copytool_in thread has finished
[2025-10-12 19:20:05] 2025-10-12 17:19:36,054 | INFO     | [payload] failed_post thread has finished
[2025-10-12 19:20:05] 2025-10-12 17:19:36,230 | INFO     | [job] validate thread has finished
[2025-10-12 19:20:05] 2025-10-12 17:19:36,334 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 19:20:05] 2025-10-12 17:19:36,350 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 19:20:05] 2025-10-12 17:19:36,415 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 19:20:05] 2025-10-12 17:19:36,454 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 19:20:05] 2025-10-12 17:19:36,520 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 19:20:05] 2025-10-12 17:19:36,926 | INFO     | [payload] control thread has finished
[2025-10-12 19:20:05] 2025-10-12 17:19:37,087 | INFO     | [payload] validate_post thread has finished
[2025-10-12 19:20:05] 2025-10-12 17:19:37,678 | INFO     | [data] copytool_out thread has finished
[2025-10-12 19:20:05] 2025-10-12 17:19:40,461 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 19:20:05] 2025-10-12 17:19:54,340 | INFO     | [monitor] cgroup control has ended
[2025-10-12 19:20:05] 2025-10-12 17:19:56,097 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140072364705600)>', '<ExcThread(monitor, started 140071869069056)>']
[2025-10-12 19:20:05] 2025-10-12 17:20:01,123 | INFO     | all workflow threads have been joined
[2025-10-12 19:20:05] 2025-10-12 17:20:01,123 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 19:20:05] 2025-10-12 17:20:01,124 | INFO     | traces error code: 0
[2025-10-12 19:20:05] 2025-10-12 17:20:01,124 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 19:20:05] 2025-10-12 17:20:05,047 | INFO     | PID=3221700 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 19:20:05] 2025-10-12 17:20:05,047 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 19:20:05] 2025-10-12 17:20:05,047 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 19:20:05] 2025-10-12 17:20:05,047 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 19:20:05] 2025-10-12 17:20:05,047 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 19:20:05] 2025-10-12 17:20:05,047 | INFO     | [monitor] control thread has ended
[2025-10-12 19:20:05] 2025-10-12 17:20:05,097 [wrapper] ==== pilot stdout END ====
[2025-10-12 19:20:05] 2025-10-12 17:20:05,100 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 19:20:05] 2025-10-12 17:20:05,102 [wrapper] pilotpid: 3221700
[2025-10-12 19:20:05] 2025-10-12 17:20:05,105 [wrapper] Pilot exit status: 0
[2025-10-12 19:20:05] 2025-10-12 17:20:05,113 [wrapper] pandaids: 6837379075
[2025-10-12 19:20:05] 2025-10-12 17:20:05,129 [wrapper] cleanup supervisor_pilot 3239900 3221701
[2025-10-12 19:20:05] 2025-10-12 17:20:05,132 [wrapper] Test setup, not cleaning
[2025-10-12 19:20:05] 2025-10-12 17:20:05,134 [wrapper] apfmon messages muted
[2025-10-12 19:20:05] 2025-10-12 17:20:05,137 [wrapper] ==== wrapper stdout END ====
[2025-10-12 19:20:05] 2025-10-12 17:20:05,139 [wrapper] ==== wrapper stderr END ====
[2025-10-12 19:20:05]  *** Error codes and diagnostics ***
[2025-10-12 19:20:05]     "exeErrorCode": 0,
[2025-10-12 19:20:05]     "exeErrorDiag": "",
[2025-10-12 19:20:05]     "pilotErrorCode": 0,
[2025-10-12 19:20:05]     "pilotErrorDiag": "",
[2025-10-12 19:20:05]  *** Listing of results directory ***
[2025-10-12 19:20:05] total 407728
[2025-10-12 19:20:05] -rw-r--r-- 1 boinc boinc    557409 Oct 10 03:33 pilot3.tar.gz
[2025-10-12 19:20:05] -rw-r--r-- 1 boinc boinc      5112 Oct 10 03:55 queuedata.json
[2025-10-12 19:20:05] -rwx------ 1 boinc boinc     36292 Oct 10 03:55 runpilot2-wrapper.sh
[2025-10-12 19:20:05] -rw-r--r-- 1 boinc boinc       100 Oct 12 17:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 19:20:05] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 17:58 run_atlas
[2025-10-12 19:20:05] -rw-r--r-- 1 boinc boinc       105 Oct 12 17:58 job.xml
[2025-10-12 19:20:05] -rw-r--r-- 2 boinc boinc 220669986 Oct 12 17:58 EVNT.46676267._001232.pool.root.1
[2025-10-12 19:20:05] -rw-r--r-- 2 boinc boinc    569685 Oct 12 17:58 input.tar.gz
[2025-10-12 19:20:05] -rw-r--r-- 2 boinc boinc     15120 Oct 12 17:58 start_atlas.sh
[2025-10-12 19:20:05] drwxrwx--x 2 boinc boinc      4096 Oct 12 17:58 shared
[2025-10-12 19:20:05] -rw-r--r-- 1 boinc boinc         0 Oct 12 17:58 boinc_setup_complete
[2025-10-12 19:20:05] -rw-r--r-- 1 boinc boinc      6447 Oct 12 17:58 init_data.xml
[2025-10-12 19:20:05] -rw-r--r-- 1 boinc boinc         0 Oct 12 17:58 boinc_lockfile
[2025-10-12 19:20:05] -rw-r--r-- 1 boinc boinc      2549 Oct 12 17:58 pandaJob.out
[2025-10-12 19:20:05] -rw------- 1 boinc boinc    975528 Oct 12 17:58 agis_schedconf.cvmfs.json
[2025-10-12 19:20:05] -rw------- 1 boinc boinc   1560580 Oct 12 17:58 agis_ddmendpoints.agis.ALL.json
[2025-10-12 19:20:05] drwx------ 5 boinc boinc      4096 Oct 12 17:58 pilot3
[2025-10-12 19:20:05] -rw------- 1 boinc boinc 190986217 Oct 12 19:19 HITS.46676269._030214.pool.root.1
[2025-10-12 19:20:05] -rw------- 1 boinc boinc        95 Oct 12 19:19 pilot_heartbeat.json
[2025-10-12 19:20:05] -rw-r--r-- 1 boinc boinc       529 Oct 12 19:19 boinc_task_state.xml
[2025-10-12 19:20:05] -rw------- 1 boinc boinc      1017 Oct 12 19:19 memory_monitor_summary.json
[2025-10-12 19:20:05] -rw------- 1 boinc boinc    269944 Oct 12 19:19 log.46676269._030214.job.log.tgz.1
[2025-10-12 19:20:05] -rw------- 1 boinc boinc      7753 Oct 12 19:19 heartbeat.json
[2025-10-12 19:20:05] -rw-r--r-- 1 boinc boinc      8192 Oct 12 19:19 boinc_mmap_file
[2025-10-12 19:20:05] -rw-r--r-- 1 boinc boinc        27 Oct 12 19:19 wrapper_checkpoint.txt
[2025-10-12 19:20:05] -rw------- 1 boinc boinc       747 Oct 12 19:20 pilotlog.txt
[2025-10-12 19:20:05] -rw------- 1 boinc boinc    713170 Oct 12 19:20 log.46676269._030214.job.log.1
[2025-10-12 19:20:05] -rw------- 1 boinc boinc       357 Oct 12 19:20 output.list
[2025-10-12 19:20:05] -rw-r--r-- 1 boinc boinc       620 Oct 12 19:20 runtime_log
[2025-10-12 19:20:05] -rw------- 1 boinc boinc   1003520 Oct 12 19:20 result.tar.gz
[2025-10-12 19:20:05] -rw-r--r-- 1 boinc boinc      8782 Oct 12 19:20 runtime_log.err
[2025-10-12 19:20:05] -rw------- 1 boinc boinc       659 Oct 12 19:20 bYfLDm7WHR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmkybNDmxh5X1n.diag
[2025-10-12 19:20:05] -rw-r--r-- 1 boinc boinc      9862 Oct 12 19:20 stderr.txt
[2025-10-12 19:20:05] HITS file was successfully produced:
[2025-10-12 19:20:05] -rw------- 1 boinc boinc 190986217 Oct 12 19:19 shared/HITS.pool.root.1
[2025-10-12 19:20:05]  *** Contents of shared directory: ***
[2025-10-12 19:20:05] total 403576
[2025-10-12 19:20:05] -rw-r--r-- 2 boinc boinc 220669986 Oct 12 17:58 ATLAS.root_0
[2025-10-12 19:20:05] -rw-r--r-- 2 boinc boinc    569685 Oct 12 17:58 input.tar.gz
[2025-10-12 19:20:05] -rw-r--r-- 2 boinc boinc     15120 Oct 12 17:58 start_atlas.sh
[2025-10-12 19:20:05] -rw------- 1 boinc boinc 190986217 Oct 12 19:19 HITS.pool.root.1
[2025-10-12 19:20:05] -rw------- 1 boinc boinc   1003520 Oct 12 19:20 result.tar.gz
19:20:07 (3217976): run_atlas exited; CPU time 13852.167795
19:20:07 (3217976): called boinc_finish(0)

</stderr_txt>
]]>

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