Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:18:15 (3367898): wrapper (7.7.26015): starting
16:18:15 (3367898): wrapper: running run_atlas (--nthreads 6)
[2025-10-12 16:18:16] Arguments: --nthreads 6
[2025-10-12 16:18:16] Threads: 6
[2025-10-12 16:18:16] Checking for CVMFS
[2025-10-12 16:18:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:18:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:18:16] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:18:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:18:16] 2.11.5.0 3651556 3989 72356 151612 3 9 38653398 52428800 1858 130560 0 12351186 99.998 135222 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-12 16:18:16] CVMFS is ok
[2025-10-12 16:18:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:18:16] Checking for apptainer binary...
[2025-10-12 16:18:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 16:18:16] Running /usr/bin/apptainer --version
[2025-10-12 16:18:16] apptainer version 1.3.5-1.el9
[2025-10-12 16:18:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:18:16] testio008
[2025-10-12 16:18:16] apptainer works
[2025-10-12 16:18:16] Set ATHENA_PROC_NUMBER=6
[2025-10-12 16:18:16] Set ATHENA_CORE_NUMBER=6
[2025-10-12 16:18:16] Starting ATLAS job with PandaID=6839164333
[2025-10-12 16:18:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 17:28:39]  *** The last 200 lines of the pilot log: ***
[2025-10-12 17:28:39] 2025-10-12 08:27:23,366 | INFO     | time since job start (4137s) is within the limit (172800.0s)
[2025-10-12 17:28:39] 2025-10-12 08:27:24,570 | INFO     | monitor loop #319: job 0:6839164333 is in state 'finished'
[2025-10-12 17:28:39] 2025-10-12 08:27:24,571 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:28:39] 2025-10-12 08:27:25,370 | INFO     | time since job start (4139s) is within the limit (172800.0s)
[2025-10-12 17:28:39] 2025-10-12 08:27:27,073 | INFO     | monitor loop #320: job 0:6839164333 is in state 'finished'
[2025-10-12 17:28:39] 2025-10-12 08:27:27,074 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:28:39] 2025-10-12 08:27:27,375 | INFO     | time since job start (4141s) is within the limit (172800.0s)
[2025-10-12 17:28:39] 2025-10-12 08:27:29,381 | INFO     | time since job start (4143s) is within the limit (172800.0s)
[2025-10-12 17:28:39] 2025-10-12 08:27:29,576 | INFO     | monitor loop #321: job 0:6839164333 is in state 'finished'
[2025-10-12 17:28:39] 2025-10-12 08:27:29,577 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:28:39] 2025-10-12 08:27:31,386 | INFO     | time since job start (4145s) is within the limit (172800.0s)
[2025-10-12 17:28:39] 2025-10-12 08:27:32,079 | INFO     | monitor loop #322: job 0:6839164333 is in state 'finished'
[2025-10-12 17:28:39] 2025-10-12 08:27:32,080 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:28:39] 2025-10-12 08:27:33,391 | INFO     | time since job start (4147s) is within the limit (172800.0s)
[2025-10-12 17:28:39] 2025-10-12 08:27:34,582 | INFO     | monitor loop #323: job 0:6839164333 is in state 'finished'
[2025-10-12 17:28:39] 2025-10-12 08:27:34,583 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:28:39] 2025-10-12 08:27:35,396 | INFO     | time since job start (4149s) is within the limit (172800.0s)
[2025-10-12 17:28:39] 2025-10-12 08:27:36,447 | INFO     | PID=3371664 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 17:28:39] 2025-10-12 08:27:36,447 | INFO     | .. there are 3 such processes running
[2025-10-12 17:28:39] 2025-10-12 08:27:37,084 | INFO     | monitor loop #324: job 0:6839164333 is in state 'finished'
[2025-10-12 17:28:39] 2025-10-12 08:27:37,085 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:28:39] 2025-10-12 08:27:37,448 | INFO     | time since job start (4151s) is within the limit (172800.0s)
[2025-10-12 17:28:39] 2025-10-12 08:27:39,453 | INFO     | time since job start (4153s) is within the limit (172800.0s)
[2025-10-12 17:28:39] 2025-10-12 08:27:39,587 | INFO     | monitor loop #325: job 0:6839164333 is in state 'finished'
[2025-10-12 17:28:39] 2025-10-12 08:27:39,588 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:28:39] 2025-10-12 08:27:41,459 | INFO     | time since job start (4155s) is within the limit (172800.0s)
[2025-10-12 17:28:39] 2025-10-12 08:27:42,090 | INFO     | monitor loop #326: job 0:6839164333 is in state 'finished'
[2025-10-12 17:28:39] 2025-10-12 08:27:42,091 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:28:39] 2025-10-12 08:27:43,464 | INFO     | time since job start (4157s) is within the limit (172800.0s)
[2025-10-12 17:28:39] 2025-10-12 08:27:44,594 | INFO     | monitor loop #327: job 0:6839164333 is in state 'finished'
[2025-10-12 17:28:39] 2025-10-12 08:27:44,594 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:28:39] 2025-10-12 08:27:45,469 | INFO     | time since job start (4159s) is within the limit (172800.0s)
[2025-10-12 17:28:39] 2025-10-12 08:27:47,096 | INFO     | monitor loop #328: job 0:6839164333 is in state 'finished'
[2025-10-12 17:28:39] 2025-10-12 08:27:47,097 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:28:39] 2025-10-12 08:27:47,474 | INFO     | time since job start (4161s) is within the limit (172800.0s)
[2025-10-12 17:28:39] 2025-10-12 08:27:49,218 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 17:28:39] 2025-10-12 08:27:49,220 | INFO     | found 12 cores (12 cores per socket, 1 socket) , CPU MHz: 4085.331549999999
[2025-10-12 17:28:39] 2025-10-12 08:27:49,221 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6839164333/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 17:28:39] 2025-10-12 08:27:49,221 | INFO     | extracted standard info from prmon json
[2025-10-12 17:28:39] 2025-10-12 08:27:49,222 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 17:28:39] 2025-10-12 08:27:49,222 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 17:28:39] 2025-10-12 08:27:49,222 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 17:28:39] 2025-10-12 08:27:49,222 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 17:28:39] 2025-10-12 08:27:49,222 | INFO     | fitting pss+swap vs Time
[2025-10-12 17:28:39] 2025-10-12 08:27:49,222 | INFO     | sum of square deviations: 66959395.0
[2025-10-12 17:28:39] 2025-10-12 08:27:49,223 | INFO     | sum of deviations: -4061324825.5
[2025-10-12 17:28:39] 2025-10-12 08:27:49,223 | INFO     | mean x: 1760255629.5
[2025-10-12 17:28:39] 2025-10-12 08:27:49,223 | INFO     | mean y: 2638583.25
[2025-10-12 17:28:39] 2025-10-12 08:27:49,223 | INFO     | -- intersect: 106768386501.29018
[2025-10-12 17:28:39] 2025-10-12 08:27:49,223 | INFO     | intersect: 106768386501.29018
[2025-10-12 17:28:39] 2025-10-12 08:27:49,223 | INFO     | chi2: 0.05465270665187331
[2025-10-12 17:28:39] 2025-10-12 08:27:49,223 | INFO     | -- intersect: 106768386501.29018
[2025-10-12 17:28:39] 2025-10-12 08:27:49,223 | INFO     | current memory leak: -60.65 B/s (using 60 data points, chi2=0.05)
[2025-10-12 17:28:39] 2025-10-12 08:27:49,223 | INFO     | could have reported an average CPU frequency of 3702 MHz (6 samples)
[2025-10-12 17:28:39] 2025-10-12 08:27:49,223 | INFO     | ..............................
[2025-10-12 17:28:39] 2025-10-12 08:27:49,223 | INFO     | . Timing measurements:
[2025-10-12 17:28:39] 2025-10-12 08:27:49,223 | INFO     | . get job = 0 s
[2025-10-12 17:28:39] 2025-10-12 08:27:49,223 | INFO     | . initial setup = 5 s
[2025-10-12 17:28:39] 2025-10-12 08:27:49,223 | INFO     | . payload setup = 2 s
[2025-10-12 17:28:39] 2025-10-12 08:27:49,223 | INFO     | . stage-in = 0 s
[2025-10-12 17:28:39] 2025-10-12 08:27:49,223 | INFO     | . payload execution = 4084 s
[2025-10-12 17:28:39] 2025-10-12 08:27:49,223 | INFO     | . stage-out = 0 s
[2025-10-12 17:28:39] 2025-10-12 08:27:49,223 | INFO     | . log creation = 0 s
[2025-10-12 17:28:39] 2025-10-12 08:27:49,223 | INFO     | ..............................
[2025-10-12 17:28:39] 2025-10-12 08:27:49,267 | INFO     | 
[2025-10-12 17:28:39] 2025-10-12 08:27:49,267 | INFO     | job summary report
[2025-10-12 17:28:39] 2025-10-12 08:27:49,267 | INFO     | --------------------------------------------------
[2025-10-12 17:28:39] 2025-10-12 08:27:49,267 | INFO     | PanDA job id: 6839164333
[2025-10-12 17:28:39] 2025-10-12 08:27:49,267 | INFO     | task id: 46676269
[2025-10-12 17:28:39] 2025-10-12 08:27:49,267 | INFO     | errors: (none)
[2025-10-12 17:28:39] 2025-10-12 08:27:49,267 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 17:28:39] 2025-10-12 08:27:49,267 | INFO     | pilot state: finished 
[2025-10-12 17:28:39] 2025-10-12 08:27:49,267 | INFO     | transexitcode: 0
[2025-10-12 17:28:39] 2025-10-12 08:27:49,267 | INFO     | exeerrorcode: 0
[2025-10-12 17:28:39] 2025-10-12 08:27:49,267 | INFO     | exeerrordiag: 
[2025-10-12 17:28:39] 2025-10-12 08:27:49,267 | INFO     | exitcode: 0
[2025-10-12 17:28:39] 2025-10-12 08:27:49,267 | INFO     | exitmsg: OK
[2025-10-12 17:28:39] 2025-10-12 08:27:49,268 | INFO     | cpuconsumptiontime: 21967 s
[2025-10-12 17:28:39] 2025-10-12 08:27:49,268 | INFO     | nevents: 400
[2025-10-12 17:28:39] 2025-10-12 08:27:49,268 | INFO     | neventsw: 0
[2025-10-12 17:28:39] 2025-10-12 08:27:49,268 | INFO     | pid: 3378395
[2025-10-12 17:28:39] 2025-10-12 08:27:49,268 | INFO     | pgrp: 3378395
[2025-10-12 17:28:39] 2025-10-12 08:27:49,268 | INFO     | corecount: 6
[2025-10-12 17:28:39] 2025-10-12 08:27:49,268 | INFO     | event service: False
[2025-10-12 17:28:39] 2025-10-12 08:27:49,268 | INFO     | sizes: {0: 2348686, 1: 2348885, 3: 2349147, 11: 2349175, 4090: 2375103, 4091: 2384285, 4150: 2384423}
[2025-10-12 17:28:39] 2025-10-12 08:27:49,268 | INFO     | --------------------------------------------------
[2025-10-12 17:28:39] 2025-10-12 08:27:49,268 | INFO     | 
[2025-10-12 17:28:39] 2025-10-12 08:27:49,268 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-12 17:28:39] 2025-10-12 08:27:49,277 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 17:28:39] 2025-10-12 08:27:49,277 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 17:28:39] 2025-10-12 08:27:49,277 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 17:28:39] 2025-10-12 08:27:49,277 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 17:28:39] 2025-10-12 08:27:49,277 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 17:28:39] 2025-10-12 08:27:49,278 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 17:28:39] 2025-10-12 08:27:49,278 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 17:28:39] 2025-10-12 08:27:49,278 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 17:28:39] 2025-10-12 08:27:49,278 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 17:28:39] 2025-10-12 08:27:49,278 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 17:28:39] 2025-10-12 08:27:49,278 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 17:28:39] 2025-10-12 08:27:49,278 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 17:28:39] 2025-10-12 08:27:49,278 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 17:28:39] 2025-10-12 08:27:49,278 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 17:28:39] 2025-10-12 08:27:49,278 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 17:28:39] 2025-10-12 08:27:49,278 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 17:28:39] 2025-10-12 08:27:49,278 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 17:28:39] 2025-10-12 08:27:49,278 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 17:28:39] 2025-10-12 08:27:49,278 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 17:28:39] 2025-10-12 08:27:49,278 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 17:28:39] 2025-10-12 08:27:49,278 | INFO     | job 6839164333 has completed (purged errors)
[2025-10-12 17:28:39] 2025-10-12 08:27:49,278 | INFO     | overall cleanup function is called
[2025-10-12 17:28:39] 2025-10-12 08:27:50,283 | INFO     | --- collectZombieJob: --- 10, [3378395]
[2025-10-12 17:28:39] 2025-10-12 08:27:50,284 | INFO     | zombie collector waiting for pid 3378395
[2025-10-12 17:28:39] 2025-10-12 08:27:50,284 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 17:28:39] 2025-10-12 08:27:50,284 | INFO     | collected zombie processes
[2025-10-12 17:28:39] 2025-10-12 08:27:50,284 | INFO     | will attempt to kill all subprocesses of pid=3378395
[2025-10-12 17:28:39] 2025-10-12 08:27:50,321 | INFO     | process IDs to be killed: [3378395] (in reverse order)
[2025-10-12 17:28:39] 2025-10-12 08:27:50,342 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 17:28:39] 2025-10-12 08:27:50,342 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 17:28:39] 2025-10-12 08:27:50,344 | INFO     | did not find any defunct processes belonging to 3378395
[2025-10-12 17:28:39] 2025-10-12 08:27:50,346 | INFO     | did not find any defunct processes belonging to 3378395
[2025-10-12 17:28:39] 2025-10-12 08:27:50,346 | INFO     | ready for new job
[2025-10-12 17:28:39] 2025-10-12 08:27:50,346 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 17:28:39] 2025-10-12 08:27:50,347 | INFO     | ***************************************
[2025-10-12 17:28:39] 2025-10-12 08:27:50,347 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 17:28:39] 2025-10-12 08:27:50,347 | INFO     | ***************************************
[2025-10-12 17:28:39] 2025-10-12 08:27:50,347 | INFO     | 
[2025-10-12 17:28:39] 2025-10-12 08:27:50,348 | INFO     | architecture information:
[2025-10-12 17:28:39] 2025-10-12 08:27:50,348 | INFO     | executing command: cat /etc/os-release
[2025-10-12 17:28:39] 2025-10-12 08:27:50,355 | INFO     | cat /etc/os-release:
[2025-10-12 17:28:39] NAME="CentOS Linux"
[2025-10-12 17:28:39] VERSION="7 (Core)"
[2025-10-12 17:28:39] ID="centos"
[2025-10-12 17:28:39] ID_LIKE="rhel fedora"
[2025-10-12 17:28:39] VERSION_ID="7"
[2025-10-12 17:28:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 17:28:39] ANSI_COLOR="0;31"
[2025-10-12 17:28:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 17:28:39] HOME_URL="https://www.centos.org/"
[2025-10-12 17:28:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 17:28:39] 
[2025-10-12 17:28:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 17:28:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 17:28:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 17:28:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 17:28:39] 
[2025-10-12 17:28:39] 2025-10-12 08:27:50,355 | INFO     | ***************************************
[2025-10-12 17:28:39] 2025-10-12 08:27:50,858 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-12 17:28:39] 2025-10-12 08:27:50,866 | INFO     | sufficient remaining disk space (281208160256 B)
[2025-10-12 17:28:39] 2025-10-12 08:27:50,866 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 17:28:39] 2025-10-12 08:27:50,866 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 17:28:39] 2025-10-12 08:27:50,866 | INFO     | update_server=False
[2025-10-12 17:28:39] 2025-10-12 08:27:50,866 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 17:28:39] 2025-10-12 08:27:50,866 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 17:28:39] 2025-10-12 08:27:50,866 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:28:39] 2025-10-12 08:27:50,866 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 17:28:39] 2025-10-12 08:27:50,866 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:28:39] 2025-10-12 08:27:50,867 | INFO     | aborting loop
[2025-10-12 17:28:39] 2025-10-12 08:27:51,374 | INFO     | all data control threads have been joined
[2025-10-12 17:28:39] 2025-10-12 08:27:51,587 | INFO     | all payload control threads have been joined
[2025-10-12 17:28:39] 2025-10-12 08:27:51,597 | INFO     | all job control threads have been joined
[2025-10-12 17:28:39] 2025-10-12 08:27:51,871 | INFO     | [job] retrieve thread has finished
[2025-10-12 17:28:39] 2025-10-12 08:27:51,872 | INFO     | [job] job monitor thread has finished
[2025-10-12 17:28:39] 2025-10-12 08:27:51,872 | INFO     | [job] queue monitor thread has finished
[2025-10-12 17:28:39] 2025-10-12 08:27:52,165 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 17:28:39] 2025-10-12 08:27:52,380 | INFO     | [data] control thread has finished
[2025-10-12 17:28:39] 2025-10-12 08:27:52,588 | INFO     | [payload] control thread has finished
[2025-10-12 17:28:39] 2025-10-12 08:27:52,593 | INFO     | [job] validate thread has finished
[2025-10-12 17:28:39] 2025-10-12 08:27:52,598 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 17:28:39] 2025-10-12 08:27:52,602 | INFO     | [job] control thread has finished
[2025-10-12 17:28:39] 2025-10-12 08:27:52,801 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 17:28:39] 2025-10-12 08:27:52,848 | INFO     | [payload] failed_post thread has finished
[2025-10-12 17:28:39] 2025-10-12 08:27:52,872 | INFO     | [data] copytool_out thread has finished
[2025-10-12 17:28:39] 2025-10-12 08:27:53,168 | INFO     | [payload] validate_post thread has finished
[2025-10-12 17:28:39] 2025-10-12 08:27:53,281 | INFO     | [data] copytool_in thread has finished
[2025-10-12 17:28:39] 2025-10-12 08:27:54,872 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 17:28:39] 2025-10-12 08:28:01,608 | INFO     | job.realtimelogging is not enabled
[2025-10-12 17:28:39] 2025-10-12 08:28:02,614 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 17:28:39] 2025-10-12 08:28:20,582 | INFO     | PID=3371664 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 17:28:39] 2025-10-12 08:28:20,582 | INFO     | .. there are 3 such processes running
[2025-10-12 17:28:39] 2025-10-12 08:28:20,582 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 17:28:39] 2025-10-12 08:28:20,582 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 17:28:39] 2025-10-12 08:28:20,582 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 17:28:39] 2025-10-12 08:28:32,884 | INFO     | [monitor] cgroup control has ended
[2025-10-12 17:28:39] 2025-10-12 08:28:34,682 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139848338417472)>', '<ExcThread(monitor, started 139847985506048)>']
[2025-10-12 17:28:39] 2025-10-12 08:28:35,657 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 17:28:39] 2025-10-12 08:28:35,658 | INFO     | [monitor] control thread has ended
[2025-10-12 17:28:39] 2025-10-12 08:28:39,707 | INFO     | all workflow threads have been joined
[2025-10-12 17:28:39] 2025-10-12 08:28:39,708 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 17:28:39] 2025-10-12 08:28:39,708 | INFO     | traces error code: 0
[2025-10-12 17:28:39] 2025-10-12 08:28:39,708 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 17:28:39] 2025-10-12 08:28:39,763 [wrapper] ==== pilot stdout END ====
[2025-10-12 17:28:39] 2025-10-12 08:28:39,765 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 17:28:39] 2025-10-12 08:28:39,766 [wrapper] pilotpid: 3371664
[2025-10-12 17:28:39] 2025-10-12 08:28:39,767 [wrapper] Pilot exit status: 0
[2025-10-12 17:28:39] 2025-10-12 08:28:39,770 [wrapper] pandaids: 6839164333
[2025-10-12 17:28:39] 2025-10-12 08:28:39,782 [wrapper] cleanup supervisor_pilot 3436323 3371665
[2025-10-12 17:28:39] 2025-10-12 08:28:39,783 [wrapper] Test setup, not cleaning
[2025-10-12 17:28:39] 2025-10-12 08:28:39,784 [wrapper] apfmon messages muted
[2025-10-12 17:28:39] 2025-10-12 08:28:39,785 [wrapper] ==== wrapper stdout END ====
[2025-10-12 17:28:39] 2025-10-12 08:28:39,786 [wrapper] ==== wrapper stderr END ====
[2025-10-12 17:28:39]  *** Error codes and diagnostics ***
[2025-10-12 17:28:39]     "exeErrorCode": 0,
[2025-10-12 17:28:39]     "exeErrorDiag": "",
[2025-10-12 17:28:39]     "pilotErrorCode": 0,
[2025-10-12 17:28:39]     "pilotErrorDiag": "",
[2025-10-12 17:28:39]  *** Listing of results directory ***
[2025-10-12 17:28:39] total 409016
[2025-10-12 17:28:39] -rw-r--r--. 1 boinc boinc    557409 Oct 12 09:05 pilot3.tar.gz
[2025-10-12 17:28:39] -rw-r--r--. 1 boinc boinc      5112 Oct 12 09:38 queuedata.json
[2025-10-12 17:28:39] -rwx------. 1 boinc boinc     36292 Oct 12 09:40 runpilot2-wrapper.sh
[2025-10-12 17:28:39] -rw-r--r--. 1 boinc boinc       100 Oct 12 16:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 17:28:39] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 16:18 run_atlas
[2025-10-12 17:28:39] -rw-r--r--. 1 boinc boinc       105 Oct 12 16:18 job.xml
[2025-10-12 17:28:39] -rw-r--r--. 2 boinc boinc 219245662 Oct 12 16:18 EVNT.46676267._003104.pool.root.1
[2025-10-12 17:28:39] -rw-r--r--. 2 boinc boinc     15120 Oct 12 16:18 start_atlas.sh
[2025-10-12 17:28:39] drwxrwx--x. 2 boinc boinc        68 Oct 12 16:18 shared
[2025-10-12 17:28:39] -rw-r--r--. 2 boinc boinc    569681 Oct 12 16:18 input.tar.gz
[2025-10-12 17:28:39] -rw-r--r--. 1 boinc boinc      9509 Oct 12 16:18 init_data.xml
[2025-10-12 17:28:39] -rw-r--r--. 1 boinc boinc         0 Oct 12 16:18 boinc_lockfile
[2025-10-12 17:28:39] -rw-r--r--. 1 boinc boinc      2550 Oct 12 16:18 pandaJob.out
[2025-10-12 17:28:39] -rw-------. 1 boinc boinc    975520 Oct 12 16:18 agis_schedconf.cvmfs.json
[2025-10-12 17:28:39] -rw-------. 1 boinc boinc   1560580 Oct 12 16:18 agis_ddmendpoints.agis.ALL.json
[2025-10-12 17:28:39] drwx------. 5 boinc boinc      4096 Oct 12 16:18 pilot3
[2025-10-12 17:28:39] -rw-r--r--. 1 boinc boinc       529 Oct 12 17:26 boinc_task_state.xml
[2025-10-12 17:28:39] -rw-------. 1 boinc boinc 193843784 Oct 12 17:26 HITS.46676269._067922.pool.root.1
[2025-10-12 17:28:39] -rw-------. 1 boinc boinc      1021 Oct 12 17:26 memory_monitor_summary.json
[2025-10-12 17:28:39] -rw-------. 1 boinc boinc    300944 Oct 12 17:26 log.46676269._067922.job.log.tgz.1
[2025-10-12 17:28:39] -rw-------. 1 boinc boinc      7767 Oct 12 17:27 heartbeat.json
[2025-10-12 17:28:39] -rw-------. 1 boinc boinc        95 Oct 12 17:28 pilot_heartbeat.json
[2025-10-12 17:28:39] -rw-r--r--. 1 boinc boinc      8192 Oct 12 17:28 boinc_mmap_file
[2025-10-12 17:28:39] -rw-r--r--. 1 boinc boinc        27 Oct 12 17:28 wrapper_checkpoint.txt
[2025-10-12 17:28:39] -rw-------. 1 boinc boinc      4896 Oct 12 17:28 pilotlog.txt
[2025-10-12 17:28:39] -rw-------. 1 boinc boinc    625956 Oct 12 17:28 log.46676269._067922.job.log.1
[2025-10-12 17:28:39] -rw-------. 1 boinc boinc       357 Oct 12 17:28 output.list
[2025-10-12 17:28:39] -rw-r--r--. 1 boinc boinc       620 Oct 12 17:28 runtime_log
[2025-10-12 17:28:39] -rw-------. 1 boinc boinc    942080 Oct 12 17:28 result.tar.gz
[2025-10-12 17:28:39] -rw-r--r--. 1 boinc boinc      8661 Oct 12 17:28 runtime_log.err
[2025-10-12 17:28:39] -rw-------. 1 boinc boinc       641 Oct 12 17:28 mTvNDm9IzR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmg6hNDmxt4xwn.diag
[2025-10-12 17:28:39] -rw-r--r--. 1 boinc boinc     21927 Oct 12 17:28 stderr.txt
[2025-10-12 17:28:39] HITS file was successfully produced:
[2025-10-12 17:28:39] -rw-------. 1 boinc boinc 193843784 Oct 12 17:26 shared/HITS.pool.root.1
[2025-10-12 17:28:39]  *** Contents of shared directory: ***
[2025-10-12 17:28:39] total 404908
[2025-10-12 17:28:39] -rw-r--r--. 2 boinc boinc 219245662 Oct 12 16:18 ATLAS.root_0
[2025-10-12 17:28:39] -rw-r--r--. 2 boinc boinc     15120 Oct 12 16:18 start_atlas.sh
[2025-10-12 17:28:39] -rw-r--r--. 2 boinc boinc    569681 Oct 12 16:18 input.tar.gz
[2025-10-12 17:28:39] -rw-------. 1 boinc boinc 193843784 Oct 12 17:26 HITS.pool.root.1
[2025-10-12 17:28:39] -rw-------. 1 boinc boinc    942080 Oct 12 17:28 result.tar.gz
17:28:41 (3367898): run_atlas exited; CPU time 21991.941935
17:28:41 (3367898): called boinc_finish(0)

</stderr_txt>
]]>

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