Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:28:00 (2837828): wrapper (7.7.26015): starting
18:28:00 (2837828): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 18:28:00] Arguments: --nthreads 3
[2025-10-12 18:28:00] Threads: 3
[2025-10-12 18:28:00] Checking for CVMFS
[2025-10-12 18:28:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 18:28:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 18:28:00] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 18:28:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 18:28:01] 2.9.2.0 1520902 4440 86516 151625 3 57 23172669 36864000 0 130560 0 3480393 99.991 152155 996 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 18:28:01] CVMFS is ok
[2025-10-12 18:28:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 18:28:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 18:28:01] Further information can be found at the LHC@home message board.
[2025-10-12 18:28:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 18:28:01] Checking for apptainer binary...
[2025-10-12 18:28:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 18:28:01] Running /usr/bin/apptainer --version
[2025-10-12 18:28:01] apptainer version 1.4.1-1.1
[2025-10-12 18:28:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 18:28:01] magicA250a
[2025-10-12 18:28:01] apptainer works
[2025-10-12 18:28:01] Set ATHENA_PROC_NUMBER=3
[2025-10-12 18:28:01] Set ATHENA_CORE_NUMBER=3
[2025-10-12 18:28:01] Starting ATLAS job with PandaID=6838366696
[2025-10-12 18:28:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 19:52:18]  *** The last 200 lines of the pilot log: ***
[2025-10-12 19:52:18] 2025-10-12 17:51:14,446 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:52:18] 2025-10-12 17:51:14,446 | INFO     | aborting loop
[2025-10-12 19:52:18] 2025-10-12 17:51:14,517 | INFO     | all payload control threads have been joined
[2025-10-12 19:52:18] 2025-10-12 17:51:14,951 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 19:52:18] 2025-10-12 17:51:15,011 | INFO     | all data control threads have been joined
[2025-10-12 19:52:18] 2025-10-12 17:51:15,067 | INFO     | [job] retrieve thread has finished
[2025-10-12 19:52:18] 2025-10-12 17:51:15,068 | INFO     | [job] queue monitor thread has finished
[2025-10-12 19:52:18] 2025-10-12 17:51:15,313 | INFO     | all job control threads have been joined
[2025-10-12 19:52:18] 2025-10-12 17:51:15,452 | INFO     | [job] job monitor thread has finished
[2025-10-12 19:52:18] 2025-10-12 17:51:15,522 | INFO     | [payload] control thread has finished
[2025-10-12 19:52:18] 2025-10-12 17:51:15,824 | INFO     | [data] copytool_in thread has finished
[2025-10-12 19:52:18] 2025-10-12 17:51:15,906 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 19:52:18] 2025-10-12 17:51:16,012 | INFO     | [data] control thread has finished
[2025-10-12 19:52:18] 2025-10-12 17:51:16,016 | INFO     | [payload] failed_post thread has finished
[2025-10-12 19:52:18] 2025-10-12 17:51:16,167 | INFO     | [data] copytool_out thread has finished
[2025-10-12 19:52:18] 2025-10-12 17:51:16,278 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 19:52:18] 2025-10-12 17:51:16,319 | INFO     | [job] control thread has finished
[2025-10-12 19:52:18] 2025-10-12 17:51:16,363 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 19:52:18] 2025-10-12 17:51:16,407 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 19:52:18] 2025-10-12 17:51:16,415 | INFO     | [job] validate thread has finished
[2025-10-12 19:52:18] 2025-10-12 17:51:16,424 | INFO     | [payload] validate_post thread has finished
[2025-10-12 19:52:18] 2025-10-12 17:51:18,958 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 19:52:18] 2025-10-12 17:51:43,961 | INFO     | PID=2841545 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 19:52:18] 2025-10-12 17:51:43,961 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 19:52:18] 2025-10-12 17:51:43,961 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 19:52:18] 2025-10-12 17:51:43,961 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 19:52:18] 2025-10-12 17:52:12,628 | INFO     | [monitor] cgroup control has ended
[2025-10-12 19:52:18] 2025-10-12 17:52:13,108 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140049150007104)>', '<ExcThread(monitor, started 140048515184384)>']
[2025-10-12 19:52:18] 2025-10-12 17:52:13,114 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 19:52:18] 2025-10-12 17:52:13,114 | INFO     | [monitor] control thread has ended
[2025-10-12 19:52:18] 2025-10-12 17:52:18,134 | INFO     | all workflow threads have been joined
[2025-10-12 19:52:18] 2025-10-12 17:52:18,134 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 19:52:18] 2025-10-12 17:52:18,135 | INFO     | traces error code: 0
[2025-10-12 19:52:18] 2025-10-12 17:52:18,135 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 19:52:18] 2025-10-12 17:52:18,185 [wrapper] ==== pilot stdout END ====
[2025-10-12 19:52:18] 2025-10-12 17:52:18,187 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 19:52:18] 2025-10-12 17:52:18,190 [wrapper] pilotpid: 2841545
[2025-10-12 19:52:18] 2025-10-12 17:52:18,192 [wrapper] Pilot exit status: 0
[2025-10-12 19:52:18] 2025-10-12 17:52:18,199 [wrapper] pandaids: 6838366696
[2025-10-12 19:52:18] 2025-10-12 17:52:18,216 [wrapper] cleanup supervisor_pilot 2859935 2841546
[2025-10-12 19:52:18] 2025-10-12 17:52:18,218 [wrapper] Test setup, not cleaning
[2025-10-12 19:52:18] 2025-10-12 17:52:18,220 [wrapper] apfmon messages muted
[2025-10-12 19:52:18] 2025-10-12 17:52:18,223 [wrapper] ==== wrapper stdout END ====
[2025-10-12 19:52:18] 2025-10-12 17:52:18,225 [wrapper] ==== wrapper stderr END ====
[2025-10-12 19:52:18]  *** Error codes and diagnostics ***
[2025-10-12 19:52:18]     "exeErrorCode": 0,
[2025-10-12 19:52:18]     "exeErrorDiag": "",
[2025-10-12 19:52:18]     "pilotErrorCode": 0,
[2025-10-12 19:52:18]     "pilotErrorDiag": "",
[2025-10-12 19:52:18]  *** Listing of results directory ***
[2025-10-12 19:52:18] total 413140
[2025-10-12 19:52:18] -rw-r--r-- 1 boinc boinc    557409 Oct 11 14:28 pilot3.tar.gz
[2025-10-12 19:52:18] -rw-r--r-- 1 boinc boinc      5112 Oct 11 14:32 queuedata.json
[2025-10-12 19:52:18] -rwx------ 1 boinc boinc     36292 Oct 11 14:33 runpilot2-wrapper.sh
[2025-10-12 19:52:18] -rw-r--r-- 1 boinc boinc       100 Oct 12 18:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 19:52:18] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 18:28 run_atlas
[2025-10-12 19:52:18] -rw-r--r-- 1 boinc boinc       105 Oct 12 18:28 job.xml
[2025-10-12 19:52:18] -rw-r--r-- 2 boinc boinc 222033680 Oct 12 18:28 EVNT.46676267._002311.pool.root.1
[2025-10-12 19:52:18] -rw-r--r-- 2 boinc boinc    569681 Oct 12 18:28 input.tar.gz
[2025-10-12 19:52:18] -rw-r--r-- 2 boinc boinc     15120 Oct 12 18:28 start_atlas.sh
[2025-10-12 19:52:18] drwxrwx--x 2 boinc boinc      4096 Oct 12 18:28 shared
[2025-10-12 19:52:18] -rw-r--r-- 1 boinc boinc         0 Oct 12 18:28 boinc_setup_complete
[2025-10-12 19:52:18] -rw-r--r-- 1 boinc boinc      6442 Oct 12 18:28 init_data.xml
[2025-10-12 19:52:18] -rw-r--r-- 1 boinc boinc         0 Oct 12 18:28 boinc_lockfile
[2025-10-12 19:52:18] -rw-r--r-- 1 boinc boinc      2549 Oct 12 18:28 pandaJob.out
[2025-10-12 19:52:18] -rw------- 1 boinc boinc    975528 Oct 12 18:28 agis_schedconf.cvmfs.json
[2025-10-12 19:52:18] -rw------- 1 boinc boinc   1560580 Oct 12 18:28 agis_ddmendpoints.agis.ALL.json
[2025-10-12 19:52:18] drwx------ 5 boinc boinc      4096 Oct 12 18:28 pilot3
[2025-10-12 19:52:18] -rw------- 1 boinc boinc 195178592 Oct 12 19:50 HITS.46676269._057563.pool.root.1
[2025-10-12 19:52:18] -rw-r--r-- 1 boinc boinc       529 Oct 12 19:50 boinc_task_state.xml
[2025-10-12 19:52:18] -rw------- 1 boinc boinc      1024 Oct 12 19:50 memory_monitor_summary.json
[2025-10-12 19:52:18] -rw------- 1 boinc boinc    244598 Oct 12 19:51 log.46676269._057563.job.log.tgz.1
[2025-10-12 19:52:18] -rw------- 1 boinc boinc      7777 Oct 12 19:51 heartbeat.json
[2025-10-12 19:52:18] -rw------- 1 boinc boinc        95 Oct 12 19:51 pilot_heartbeat.json
[2025-10-12 19:52:18] -rw-r--r-- 1 boinc boinc      8192 Oct 12 19:51 boinc_mmap_file
[2025-10-12 19:52:18] -rw-r--r-- 1 boinc boinc        27 Oct 12 19:51 wrapper_checkpoint.txt
[2025-10-12 19:52:18] -rw------- 1 boinc boinc      4752 Oct 12 19:52 pilotlog.txt
[2025-10-12 19:52:18] -rw------- 1 boinc boinc    732853 Oct 12 19:52 log.46676269._057563.job.log.1
[2025-10-12 19:52:18] -rw------- 1 boinc boinc       357 Oct 12 19:52 output.list
[2025-10-12 19:52:18] -rw-r--r-- 1 boinc boinc       620 Oct 12 19:52 runtime_log
[2025-10-12 19:52:18] -rw------- 1 boinc boinc    993280 Oct 12 19:52 result.tar.gz
[2025-10-12 19:52:18] -rw-r--r-- 1 boinc boinc      8797 Oct 12 19:52 runtime_log.err
[2025-10-12 19:52:18] -rw------- 1 boinc boinc       662 Oct 12 19:52 B6bKDm0xnR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmvrRMDmYBrMtn.diag
[2025-10-12 19:52:18] -rw-r--r-- 1 boinc boinc      6940 Oct 12 19:52 stderr.txt
[2025-10-12 19:52:18] HITS file was successfully produced:
[2025-10-12 19:52:18] -rw------- 1 boinc boinc 195178592 Oct 12 19:50 shared/HITS.pool.root.1
[2025-10-12 19:52:18]  *** Contents of shared directory: ***
[2025-10-12 19:52:18] total 408996
[2025-10-12 19:52:18] -rw-r--r-- 2 boinc boinc 222033680 Oct 12 18:28 ATLAS.root_0
[2025-10-12 19:52:18] -rw-r--r-- 2 boinc boinc    569681 Oct 12 18:28 input.tar.gz
[2025-10-12 19:52:18] -rw-r--r-- 2 boinc boinc     15120 Oct 12 18:28 start_atlas.sh
[2025-10-12 19:52:18] -rw------- 1 boinc boinc 195178592 Oct 12 19:50 HITS.pool.root.1
[2025-10-12 19:52:18] -rw------- 1 boinc boinc    993280 Oct 12 19:52 result.tar.gz
19:52:19 (2837828): run_atlas exited; CPU time 14224.685719
19:52:19 (2837828): called boinc_finish(0)

</stderr_txt>
]]>

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