Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:25:52 (2897234): wrapper (7.7.26015): starting
22:25:52 (2897234): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 22:25:52] Arguments: --nthreads 3
[2025-10-12 22:25:52] Threads: 3
[2025-10-12 22:25:52] Checking for CVMFS
[2025-10-12 22:25:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 22:25:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 22:25:52] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 22:25:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 22:25:52] 2.9.2.0 1460546 4835 83136 151636 0 57 4248003 36864000 0 130560 0 3800772 99.991 165491 842 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 22:25:52] CVMFS is ok
[2025-10-12 22:25:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 22:25:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 22:25:52] Further information can be found at the LHC@home message board.
[2025-10-12 22:25:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 22:25:52] Checking for apptainer binary...
[2025-10-12 22:25:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 22:25:52] Running /usr/bin/apptainer --version
[2025-10-12 22:25:52] apptainer version 1.4.1-1.1
[2025-10-12 22:25:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 22:25:52] thA371a
[2025-10-12 22:25:52] apptainer works
[2025-10-12 22:25:52] Set ATHENA_PROC_NUMBER=3
[2025-10-12 22:25:52] Set ATHENA_CORE_NUMBER=3
[2025-10-12 22:25:52] Starting ATLAS job with PandaID=6839163840
[2025-10-12 22:25:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:55:28]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:55:28] 2025-10-12 21:54:57,733 | INFO     | cat /etc/os-release:
[2025-10-12 23:55:28] NAME="CentOS Linux"
[2025-10-12 23:55:28] VERSION="7 (Core)"
[2025-10-12 23:55:28] ID="centos"
[2025-10-12 23:55:28] ID_LIKE="rhel fedora"
[2025-10-12 23:55:28] VERSION_ID="7"
[2025-10-12 23:55:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:55:28] ANSI_COLOR="0;31"
[2025-10-12 23:55:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:55:28] HOME_URL="https://www.centos.org/"
[2025-10-12 23:55:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:55:28] 
[2025-10-12 23:55:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:55:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:55:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:55:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:55:28] 
[2025-10-12 23:55:28] 2025-10-12 21:54:57,733 | INFO     | ***************************************
[2025-10-12 23:55:28] 2025-10-12 21:54:58,236 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 23:55:28] 2025-10-12 21:54:58,249 | INFO     | sufficient remaining disk space (255211864064 B)
[2025-10-12 23:55:28] 2025-10-12 21:54:58,249 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:55:28] 2025-10-12 21:54:58,249 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:55:28] 2025-10-12 21:54:58,249 | INFO     | update_server=False
[2025-10-12 23:55:28] 2025-10-12 21:54:58,249 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:55:28] 2025-10-12 21:54:58,250 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:55:28] 2025-10-12 21:54:58,250 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:55:28] 2025-10-12 21:54:58,295 | INFO     | all data control threads have been joined
[2025-10-12 23:55:28] 2025-10-12 21:54:58,335 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 23:55:28] 2025-10-12 21:54:58,335 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 23:55:28] 2025-10-12 21:54:58,335 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:55:28] 2025-10-12 21:54:58,335 | INFO     | will abort loop
[2025-10-12 23:55:28] 2025-10-12 21:54:58,450 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:55:28] 2025-10-12 21:54:59,255 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:55:28] 2025-10-12 21:54:59,255 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:55:28] 2025-10-12 21:54:59,300 | INFO     | [data] control thread has finished
[2025-10-12 23:55:28] 2025-10-12 21:54:59,332 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:55:28] 2025-10-12 21:54:59,341 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:55:28] 2025-10-12 21:54:59,669 | INFO     | all job control threads have been joined
[2025-10-12 23:55:28] 2025-10-12 21:54:59,698 | INFO     | all payload control threads have been joined
[2025-10-12 23:55:28] 2025-10-12 21:54:59,906 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:55:28] 2025-10-12 21:55:00,133 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:55:28] 2025-10-12 21:55:00,151 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:55:28] 2025-10-12 21:55:00,456 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:55:28] 2025-10-12 21:55:00,643 | INFO     | [job] validate thread has finished
[2025-10-12 23:55:28] 2025-10-12 21:55:00,675 | INFO     | [job] control thread has finished
[2025-10-12 23:55:28] 2025-10-12 21:55:00,704 | INFO     | [payload] control thread has finished
[2025-10-12 23:55:28] 2025-10-12 21:55:00,718 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:55:28] 2025-10-12 21:55:00,764 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:55:28] 2025-10-12 21:55:02,257 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:55:28] 2025-10-12 21:55:03,722 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:55:28] 2025-10-12 21:55:08,953 | INFO     | job.realtimelogging is not enabled
[2025-10-12 23:55:28] 2025-10-12 21:55:09,958 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:55:28] 2025-10-12 21:55:11,449 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139647134312256)>', '<ExcThread(monitor, started 139646853940992)>']
[2025-10-12 23:55:28] 2025-10-12 21:55:16,475 | INFO     | all workflow threads have been joined
[2025-10-12 23:55:28] 2025-10-12 21:55:16,475 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:55:28] 2025-10-12 21:55:16,475 | INFO     | traces error code: 0
[2025-10-12 23:55:28] 2025-10-12 21:55:16,476 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:55:28] 2025-10-12 21:55:28,046 | INFO     | PID=2900948 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 23:55:28] 2025-10-12 21:55:28,047 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:55:28] 2025-10-12 21:55:28,047 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:55:28] 2025-10-12 21:55:28,047 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:55:28] 2025-10-12 21:55:28,047 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:55:28] 2025-10-12 21:55:28,047 | CRITICAL | thread 'MainThread' is not alive
[2025-10-12 23:55:28] 2025-10-12 21:55:28,047 | INFO     | [monitor] control thread has ended
[2025-10-12 23:55:28] 2025-10-12 21:55:28,093 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:55:28] 2025-10-12 21:55:28,095 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:55:28] 2025-10-12 21:55:28,097 [wrapper] pilotpid: 2900948
[2025-10-12 23:55:28] 2025-10-12 21:55:28,100 [wrapper] Pilot exit status: 0
[2025-10-12 23:55:28] 2025-10-12 21:55:28,107 [wrapper] pandaids: 6839163840
[2025-10-12 23:55:28] 2025-10-12 21:55:28,122 [wrapper] cleanup supervisor_pilot 2919163 2900949
[2025-10-12 23:55:28] 2025-10-12 21:55:28,125 [wrapper] Test setup, not cleaning
[2025-10-12 23:55:28] 2025-10-12 21:55:28,127 [wrapper] apfmon messages muted
[2025-10-12 23:55:28] 2025-10-12 21:55:28,129 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:55:28] 2025-10-12 21:55:28,131 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:55:28]  *** Error codes and diagnostics ***
[2025-10-12 23:55:28]     "exeErrorCode": 0,
[2025-10-12 23:55:28]     "exeErrorDiag": "",
[2025-10-12 23:55:28]     "pilotErrorCode": 0,
[2025-10-12 23:55:28]     "pilotErrorDiag": "",
[2025-10-12 23:55:28]  *** Listing of results directory ***
[2025-10-12 23:55:28] total 426480
[2025-10-12 23:55:28] -rw-r--r-- 1 boinc boinc    557409 Oct 12 02:05 pilot3.tar.gz
[2025-10-12 23:55:28] -rw-r--r-- 1 boinc boinc      5112 Oct 12 02:22 queuedata.json
[2025-10-12 23:55:28] -rwx------ 1 boinc boinc     36292 Oct 12 02:22 runpilot2-wrapper.sh
[2025-10-12 23:55:28] -rw-r--r-- 1 boinc boinc       100 Oct 12 22:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:55:28] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 22:25 run_atlas
[2025-10-12 23:55:28] -rw-r--r-- 1 boinc boinc       105 Oct 12 22:25 job.xml
[2025-10-12 23:55:28] -rw-r--r-- 2 boinc boinc 222254308 Oct 12 22:25 EVNT.46676267._002755.pool.root.1
[2025-10-12 23:55:28] -rw-r--r-- 2 boinc boinc    569676 Oct 12 22:25 input.tar.gz
[2025-10-12 23:55:28] -rw-r--r-- 2 boinc boinc     15120 Oct 12 22:25 start_atlas.sh
[2025-10-12 23:55:28] drwxrwx--x 2 boinc boinc      4096 Oct 12 22:25 shared
[2025-10-12 23:55:28] -rw-r--r-- 1 boinc boinc         0 Oct 12 22:25 boinc_setup_complete
[2025-10-12 23:55:28] -rw-r--r-- 1 boinc boinc      6439 Oct 12 22:25 init_data.xml
[2025-10-12 23:55:28] -rw-r--r-- 1 boinc boinc         0 Oct 12 22:25 boinc_lockfile
[2025-10-12 23:55:28] -rw-r--r-- 1 boinc boinc      2550 Oct 12 22:25 pandaJob.out
[2025-10-12 23:55:28] -rw------- 1 boinc boinc    975536 Oct 12 22:25 agis_schedconf.cvmfs.json
[2025-10-12 23:55:28] -rw------- 1 boinc boinc   1560580 Oct 12 22:25 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:55:28] drwx------ 5 boinc boinc      4096 Oct 12 22:25 pilot3
[2025-10-12 23:55:28] -rw------- 1 boinc boinc 208477795 Oct 12 23:54 HITS.46676269._067544.pool.root.1
[2025-10-12 23:55:28] -rw-r--r-- 1 boinc boinc       529 Oct 12 23:54 boinc_task_state.xml
[2025-10-12 23:55:28] -rw------- 1 boinc boinc      1022 Oct 12 23:54 memory_monitor_summary.json
[2025-10-12 23:55:28] -rw------- 1 boinc boinc    268997 Oct 12 23:54 log.46676269._067544.job.log.tgz.1
[2025-10-12 23:55:28] -rw------- 1 boinc boinc      7768 Oct 12 23:54 heartbeat.json
[2025-10-12 23:55:28] -rw-r--r-- 1 boinc boinc      8192 Oct 12 23:55 boinc_mmap_file
[2025-10-12 23:55:28] -rw-r--r-- 1 boinc boinc        27 Oct 12 23:55 wrapper_checkpoint.txt
[2025-10-12 23:55:28] -rw------- 1 boinc boinc       817 Oct 12 23:55 pilotlog.txt
[2025-10-12 23:55:28] -rw------- 1 boinc boinc        95 Oct 12 23:55 pilot_heartbeat.json
[2025-10-12 23:55:28] -rw------- 1 boinc boinc    779201 Oct 12 23:55 log.46676269._067544.job.log.1
[2025-10-12 23:55:28] -rw------- 1 boinc boinc       357 Oct 12 23:55 output.list
[2025-10-12 23:55:28] -rw-r--r-- 1 boinc boinc       620 Oct 12 23:55 runtime_log
[2025-10-12 23:55:28] -rw------- 1 boinc boinc   1064960 Oct 12 23:55 result.tar.gz
[2025-10-12 23:55:28] -rw-r--r-- 1 boinc boinc      8782 Oct 12 23:55 runtime_log.err
[2025-10-12 23:55:28] -rw------- 1 boinc boinc       659 Oct 12 23:55 bsLNDmX2yR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmj2hNDmdBrEBo.diag
[2025-10-12 23:55:28] -rw-r--r-- 1 boinc boinc      9202 Oct 12 23:55 stderr.txt
[2025-10-12 23:55:28] HITS file was successfully produced:
[2025-10-12 23:55:28] -rw------- 1 boinc boinc 208477795 Oct 12 23:54 shared/HITS.pool.root.1
[2025-10-12 23:55:28]  *** Contents of shared directory: ***
[2025-10-12 23:55:28] total 422264
[2025-10-12 23:55:28] -rw-r--r-- 2 boinc boinc 222254308 Oct 12 22:25 ATLAS.root_0
[2025-10-12 23:55:28] -rw-r--r-- 2 boinc boinc    569676 Oct 12 22:25 input.tar.gz
[2025-10-12 23:55:28] -rw-r--r-- 2 boinc boinc     15120 Oct 12 22:25 start_atlas.sh
[2025-10-12 23:55:28] -rw------- 1 boinc boinc 208477795 Oct 12 23:54 HITS.pool.root.1
[2025-10-12 23:55:28] -rw------- 1 boinc boinc   1064960 Oct 12 23:55 result.tar.gz
23:55:29 (2897234): run_atlas exited; CPU time 15232.288545
23:55:29 (2897234): called boinc_finish(0)

</stderr_txt>
]]>

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