Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:07:53 (2767908): wrapper (7.7.26015): starting
18:07:53 (2767908): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 18:07:53] Arguments: --nthreads 3
[2025-10-12 18:07:53] Threads: 3
[2025-10-12 18:07:53] Checking for CVMFS
[2025-10-12 18:07:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 18:07:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 18:07:53] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 18:07:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 18:07:53] 2.9.2.0 233307 4566 65488 151625 1 57 2931419 36864001 0 130560 0 3334809 99.990 153287 887 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 18:07:53] CVMFS is ok
[2025-10-12 18:07:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 18:07:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 18:07:53] Further information can be found at the LHC@home message board.
[2025-10-12 18:07:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 18:07:53] Checking for apptainer binary...
[2025-10-12 18:07:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 18:07:53] Running /usr/bin/apptainer --version
[2025-10-12 18:07:53] apptainer version 1.4.1-1.1
[2025-10-12 18:07:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 18:07:53] atlasA221b
[2025-10-12 18:07:53] apptainer works
[2025-10-12 18:07:53] Set ATHENA_PROC_NUMBER=3
[2025-10-12 18:07:53] Set ATHENA_CORE_NUMBER=3
[2025-10-12 18:07:53] Starting ATLAS job with PandaID=6839164178
[2025-10-12 18:07:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 19:47:25]  *** The last 200 lines of the pilot log: ***
[2025-10-12 19:47:25] 2025-10-12 17:46:53,830 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 19:47:25] 2025-10-12 17:46:53,830 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 19:47:25] 2025-10-12 17:46:53,830 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 19:47:25] 2025-10-12 17:46:53,830 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 19:47:25] 2025-10-12 17:46:53,830 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 19:47:25] 2025-10-12 17:46:53,830 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 19:47:25] 2025-10-12 17:46:53,830 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 19:47:25] 2025-10-12 17:46:53,831 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 19:47:25] 2025-10-12 17:46:53,831 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 19:47:25] 2025-10-12 17:46:53,831 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 19:47:25] 2025-10-12 17:46:53,831 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 19:47:25] 2025-10-12 17:46:53,831 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 19:47:25] 2025-10-12 17:46:53,831 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 19:47:25] 2025-10-12 17:46:53,831 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 19:47:25] 2025-10-12 17:46:53,831 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 19:47:25] 2025-10-12 17:46:53,831 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 19:47:25] 2025-10-12 17:46:53,831 | INFO     | job 6839164178 has completed (purged errors)
[2025-10-12 19:47:25] 2025-10-12 17:46:53,831 | INFO     | overall cleanup function is called
[2025-10-12 19:47:25] 2025-10-12 17:46:54,836 | INFO     | --- collectZombieJob: --- 10, [2778164]
[2025-10-12 19:47:25] 2025-10-12 17:46:54,836 | INFO     | zombie collector waiting for pid 2778164
[2025-10-12 19:47:25] 2025-10-12 17:46:54,837 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 19:47:25] 2025-10-12 17:46:54,837 | INFO     | collected zombie processes
[2025-10-12 19:47:25] 2025-10-12 17:46:54,837 | INFO     | will attempt to kill all subprocesses of pid=2778164
[2025-10-12 19:47:25] 2025-10-12 17:46:54,903 | INFO     | process IDs to be killed: [2778164] (in reverse order)
[2025-10-12 19:47:25] 2025-10-12 17:46:54,935 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 19:47:25] 2025-10-12 17:46:54,936 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 19:47:25] 2025-10-12 17:46:54,938 | INFO     | did not find any defunct processes belonging to 2778164
[2025-10-12 19:47:25] 2025-10-12 17:46:54,940 | INFO     | did not find any defunct processes belonging to 2778164
[2025-10-12 19:47:25] 2025-10-12 17:46:54,940 | INFO     | ready for new job
[2025-10-12 19:47:25] 2025-10-12 17:46:54,940 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 19:47:25] 2025-10-12 17:46:54,940 | INFO     | ***************************************
[2025-10-12 19:47:25] 2025-10-12 17:46:54,940 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 19:47:25] 2025-10-12 17:46:54,940 | INFO     | ***************************************
[2025-10-12 19:47:25] 2025-10-12 17:46:54,941 | INFO     | 
[2025-10-12 19:47:25] 2025-10-12 17:46:54,941 | INFO     | architecture information:
[2025-10-12 19:47:25] 2025-10-12 17:46:54,941 | INFO     | executing command: cat /etc/os-release
[2025-10-12 19:47:25] 2025-10-12 17:46:54,950 | INFO     | cat /etc/os-release:
[2025-10-12 19:47:25] NAME="CentOS Linux"
[2025-10-12 19:47:25] VERSION="7 (Core)"
[2025-10-12 19:47:25] ID="centos"
[2025-10-12 19:47:25] ID_LIKE="rhel fedora"
[2025-10-12 19:47:25] VERSION_ID="7"
[2025-10-12 19:47:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 19:47:25] ANSI_COLOR="0;31"
[2025-10-12 19:47:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 19:47:25] HOME_URL="https://www.centos.org/"
[2025-10-12 19:47:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 19:47:25] 
[2025-10-12 19:47:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 19:47:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 19:47:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 19:47:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 19:47:25] 
[2025-10-12 19:47:25] 2025-10-12 17:46:54,951 | INFO     | ***************************************
[2025-10-12 19:47:25] 2025-10-12 17:46:55,452 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 19:47:25] 2025-10-12 17:46:55,462 | INFO     | sufficient remaining disk space (357777276928 B)
[2025-10-12 19:47:25] 2025-10-12 17:46:55,462 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 19:47:25] 2025-10-12 17:46:55,462 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 19:47:25] 2025-10-12 17:46:55,462 | INFO     | update_server=False
[2025-10-12 19:47:25] 2025-10-12 17:46:55,462 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 19:47:25] 2025-10-12 17:46:55,462 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:47:25] 2025-10-12 17:46:55,574 | INFO     | all data control threads have been joined
[2025-10-12 19:47:25] 2025-10-12 17:46:55,822 | INFO     | all job control threads have been joined
[2025-10-12 19:47:25] 2025-10-12 17:46:55,855 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 19:47:25] 2025-10-12 17:46:56,155 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:47:25] 2025-10-12 17:46:56,155 | INFO     | aborting loop
[2025-10-12 19:47:25] 2025-10-12 17:46:56,440 | INFO     | all payload control threads have been joined
[2025-10-12 19:47:25] 2025-10-12 17:46:56,465 | INFO     | [job] retrieve thread has finished
[2025-10-12 19:47:25] 2025-10-12 17:46:56,468 | INFO     | [job] queue monitor thread has finished
[2025-10-12 19:47:25] 2025-10-12 17:46:56,580 | INFO     | [data] control thread has finished
[2025-10-12 19:47:25] 2025-10-12 17:46:56,724 | INFO     | [payload] validate_post thread has finished
[2025-10-12 19:47:25] 2025-10-12 17:46:56,828 | INFO     | [job] control thread has finished
[2025-10-12 19:47:25] 2025-10-12 17:46:56,868 | INFO     | [data] copytool_in thread has finished
[2025-10-12 19:47:25] 2025-10-12 17:46:57,161 | INFO     | [job] job monitor thread has finished
[2025-10-12 19:47:25] 2025-10-12 17:46:57,276 | INFO     | [payload] failed_post thread has finished
[2025-10-12 19:47:25] 2025-10-12 17:46:57,414 | INFO     | [job] validate thread has finished
[2025-10-12 19:47:25] 2025-10-12 17:46:57,446 | INFO     | [payload] control thread has finished
[2025-10-12 19:47:25] 2025-10-12 17:46:57,493 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 19:47:25] 2025-10-12 17:46:57,516 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 19:47:25] 2025-10-12 17:46:57,547 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 19:47:25] 2025-10-12 17:46:57,861 | INFO     | [data] copytool_out thread has finished
[2025-10-12 19:47:25] 2025-10-12 17:46:58,959 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 19:47:25] 2025-10-12 17:47:02,965 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 19:47:25] 2025-10-12 17:47:05,657 | INFO     | job.realtimelogging is not enabled
[2025-10-12 19:47:25] 2025-10-12 17:47:06,663 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 19:47:25] 2025-10-12 17:47:10,109 | INFO     | [monitor] cgroup control has ended
[2025-10-12 19:47:25] 2025-10-12 17:47:11,058 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140630905878336)>', '<ExcThread(monitor, started 140629979952896)>']
[2025-10-12 19:47:25] 2025-10-12 17:47:16,082 | INFO     | all workflow threads have been joined
[2025-10-12 19:47:25] 2025-10-12 17:47:16,082 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 19:47:25] 2025-10-12 17:47:16,083 | INFO     | traces error code: 0
[2025-10-12 19:47:25] 2025-10-12 17:47:16,083 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 19:47:25] 2025-10-12 17:47:25,302 | INFO     | PID=2771650 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 19:47:25] 2025-10-12 17:47:25,302 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 19:47:25] 2025-10-12 17:47:25,302 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 19:47:25] 2025-10-12 17:47:25,302 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 19:47:25] 2025-10-12 17:47:25,302 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 19:47:25] 2025-10-12 17:47:25,302 | INFO     | [monitor] control thread has ended
[2025-10-12 19:47:25] 2025-10-12 17:47:25,359 [wrapper] ==== pilot stdout END ====
[2025-10-12 19:47:25] 2025-10-12 17:47:25,362 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 19:47:25] 2025-10-12 17:47:25,364 [wrapper] pilotpid: 2771650
[2025-10-12 19:47:25] 2025-10-12 17:47:25,367 [wrapper] Pilot exit status: 0
[2025-10-12 19:47:25] 2025-10-12 17:47:25,375 [wrapper] pandaids: 6839164178
[2025-10-12 19:47:25] 2025-10-12 17:47:25,396 [wrapper] cleanup supervisor_pilot 2816449 2771651
[2025-10-12 19:47:25] 2025-10-12 17:47:25,399 [wrapper] Test setup, not cleaning
[2025-10-12 19:47:25] 2025-10-12 17:47:25,401 [wrapper] apfmon messages muted
[2025-10-12 19:47:25] 2025-10-12 17:47:25,404 [wrapper] ==== wrapper stdout END ====
[2025-10-12 19:47:25] 2025-10-12 17:47:25,406 [wrapper] ==== wrapper stderr END ====
[2025-10-12 19:47:25]  *** Error codes and diagnostics ***
[2025-10-12 19:47:25]     "exeErrorCode": 0,
[2025-10-12 19:47:25]     "exeErrorDiag": "",
[2025-10-12 19:47:25]     "pilotErrorCode": 0,
[2025-10-12 19:47:25]     "pilotErrorDiag": "",
[2025-10-12 19:47:25]  *** Listing of results directory ***
[2025-10-12 19:47:25] total 413764
[2025-10-12 19:47:25] -rw-r--r-- 1 boinc boinc    557409 Oct 12 02:05 pilot3.tar.gz
[2025-10-12 19:47:25] -rw-r--r-- 1 boinc boinc      5112 Oct 12 02:33 queuedata.json
[2025-10-12 19:47:25] -rwx------ 1 boinc boinc     36292 Oct 12 02:34 runpilot2-wrapper.sh
[2025-10-12 19:47:25] -rw-r--r-- 1 boinc boinc       100 Oct 12 18:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 19:47:25] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 18:07 run_atlas
[2025-10-12 19:47:25] -rw-r--r-- 1 boinc boinc       105 Oct 12 18:07 job.xml
[2025-10-12 19:47:25] -rw-r--r-- 2 boinc boinc 220658860 Oct 12 18:07 EVNT.46676267._002972.pool.root.1
[2025-10-12 19:47:25] -rw-r--r-- 2 boinc boinc    569683 Oct 12 18:07 input.tar.gz
[2025-10-12 19:47:25] -rw-r--r-- 2 boinc boinc     15120 Oct 12 18:07 start_atlas.sh
[2025-10-12 19:47:25] drwxrwx--x 2 boinc boinc      4096 Oct 12 18:07 shared
[2025-10-12 19:47:25] -rw-r--r-- 1 boinc boinc         0 Oct 12 18:07 boinc_setup_complete
[2025-10-12 19:47:25] -rw-r--r-- 1 boinc boinc      6197 Oct 12 18:07 init_data.xml
[2025-10-12 19:47:25] -rw-r--r-- 1 boinc boinc         0 Oct 12 18:07 boinc_lockfile
[2025-10-12 19:47:25] -rw-r--r-- 1 boinc boinc      2550 Oct 12 18:07 pandaJob.out
[2025-10-12 19:47:25] -rw------- 1 boinc boinc    975528 Oct 12 18:08 agis_schedconf.cvmfs.json
[2025-10-12 19:47:25] -rw------- 1 boinc boinc   1560580 Oct 12 18:08 agis_ddmendpoints.agis.ALL.json
[2025-10-12 19:47:25] drwx------ 5 boinc boinc      4096 Oct 12 18:08 pilot3
[2025-10-12 19:47:25] -rw------- 1 boinc boinc 196863361 Oct 12 19:46 HITS.46676269._067767.pool.root.1
[2025-10-12 19:47:25] -rw-r--r-- 1 boinc boinc       529 Oct 12 19:46 boinc_task_state.xml
[2025-10-12 19:47:25] -rw------- 1 boinc boinc        95 Oct 12 19:46 pilot_heartbeat.json
[2025-10-12 19:47:25] -rw------- 1 boinc boinc      1028 Oct 12 19:46 memory_monitor_summary.json
[2025-10-12 19:47:25] -rw------- 1 boinc boinc    278622 Oct 12 19:46 log.46676269._067767.job.log.tgz.1
[2025-10-12 19:47:25] -rw------- 1 boinc boinc      7776 Oct 12 19:46 heartbeat.json
[2025-10-12 19:47:25] -rw-r--r-- 1 boinc boinc      8192 Oct 12 19:47 boinc_mmap_file
[2025-10-12 19:47:25] -rw-r--r-- 1 boinc boinc        27 Oct 12 19:47 wrapper_checkpoint.txt
[2025-10-12 19:47:25] -rw------- 1 boinc boinc       747 Oct 12 19:47 pilotlog.txt
[2025-10-12 19:47:25] -rw------- 1 boinc boinc    858670 Oct 12 19:47 log.46676269._067767.job.log.1
[2025-10-12 19:47:25] -rw------- 1 boinc boinc       357 Oct 12 19:47 output.list
[2025-10-12 19:47:25] -rw-r--r-- 1 boinc boinc       620 Oct 12 19:47 runtime_log
[2025-10-12 19:47:25] -rw------- 1 boinc boinc   1157120 Oct 12 19:47 result.tar.gz
[2025-10-12 19:47:25] -rw-r--r-- 1 boinc boinc      8797 Oct 12 19:47 runtime_log.err
[2025-10-12 19:47:25] -rw------- 1 boinc boinc       663 Oct 12 19:47 LbPLDm8DzR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmJsSMDm8tndUn.diag
[2025-10-12 19:47:25] -rw-r--r-- 1 boinc boinc     12547 Oct 12 19:47 stderr.txt
[2025-10-12 19:47:25] HITS file was successfully produced:
[2025-10-12 19:47:25] -rw------- 1 boinc boinc 196863361 Oct 12 19:46 shared/HITS.pool.root.1
[2025-10-12 19:47:25]  *** Contents of shared directory: ***
[2025-10-12 19:47:25] total 409456
[2025-10-12 19:47:25] -rw-r--r-- 2 boinc boinc 220658860 Oct 12 18:07 ATLAS.root_0
[2025-10-12 19:47:25] -rw-r--r-- 2 boinc boinc    569683 Oct 12 18:07 input.tar.gz
[2025-10-12 19:47:25] -rw-r--r-- 2 boinc boinc     15120 Oct 12 18:07 start_atlas.sh
[2025-10-12 19:47:25] -rw------- 1 boinc boinc 196863361 Oct 12 19:46 HITS.pool.root.1
[2025-10-12 19:47:25] -rw------- 1 boinc boinc   1157120 Oct 12 19:47 result.tar.gz
19:47:48 (2767908): run_atlas exited; CPU time 17068.222626
19:47:48 (2767908): called boinc_finish(0)

</stderr_txt>
]]>

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