Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:29:19 (7606): wrapper (7.7.26015): starting
01:29:19 (7606): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 01:29:19] Arguments: --nthreads 12
[2025-10-12 01:29:19] Threads: 12
[2025-10-12 01:29:19] Checking for CVMFS
[2025-10-12 01:29:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 01:29:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 01:29:20] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 01:29:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 01:29:20] 2.11.2.0 25590 123144 89196 151609 3 57 14498202 20275200 1 130560 2 77178104 99.991 3942334 21976 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 01:29:20] CVMFS is ok
[2025-10-12 01:29:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 01:29:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 01:29:20] Further information can be found at the LHC@home message board.
[2025-10-12 01:29:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 01:29:20] Checking for apptainer binary...
[2025-10-12 01:29:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 01:29:20] Running /usr/bin/apptainer --version
[2025-10-12 01:29:20] apptainer version 1.3.2-1.el7
[2025-10-12 01:29:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 01:29:21] c-205-24.aglt2.org
[2025-10-12 01:29:21] apptainer works
[2025-10-12 01:29:21] Set ATHENA_PROC_NUMBER=12
[2025-10-12 01:29:21] Set ATHENA_CORE_NUMBER=12
[2025-10-12 01:29:21] Starting ATLAS job with PandaID=6839163938
[2025-10-12 01:29:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 02:46:49]  *** The last 200 lines of the pilot log: ***
[2025-10-12 02:46:49]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839163938/log.46676269._067642.job.log.tgz.1
[2025-10-12 02:46:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f7/1a/log.46676269._067642.job.log.tgz.1
[2025-10-12 02:46:49]  workdir=None
[2025-10-12 02:46:49] ]
[2025-10-12 02:46:49] 2025-10-12 06:46:00,481 | INFO     | transferring file log.46676269._067642.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839163938/log.46676269._067642.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 02:46:49] 2025-10-12 06:46:00,481 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839163938/log.46676269._067642.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._067642.job
[2025-10-12 02:46:49] 2025-10-12 06:46:00,503 | INFO     | adding to output.list: log.46676269._067642.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f7/1a/log.46676269._067642.job.log.tg
[2025-10-12 02:46:49] 2025-10-12 06:46:00,504 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 02:46:49] 2025-10-12 06:46:00,504 | INFO     | summary of transferred files:
[2025-10-12 02:46:49] 2025-10-12 06:46:00,504 | INFO     |  -- lfn=log.46676269._067642.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 02:46:49] 2025-10-12 06:46:00,504 | INFO     | stage-out finished correctly
[2025-10-12 02:46:49] 2025-10-12 06:46:00,589 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 02:46:49] 2025-10-12 06:46:01,005 | INFO     | monitor loop #341: job 0:6839163938 is in state 'finished'
[2025-10-12 02:46:49] 2025-10-12 06:46:01,005 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 02:46:49] 2025-10-12 06:46:02,320 | INFO     | time since job start (4586s) is within the limit (172800.0s)
[2025-10-12 02:46:49] 2025-10-12 06:46:03,223 | INFO     | job 6839163938 has state=finished
[2025-10-12 02:46:49] 2025-10-12 06:46:03,223 | INFO     | preparing for final server update for job 6839163938 in state='finished'
[2025-10-12 02:46:49] 2025-10-12 06:46:03,224 | INFO     | this job has now completed (state=finished)
[2025-10-12 02:46:49] 2025-10-12 06:46:03,224 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 02:46:49] 2025-10-12 06:46:03,225 | INFO     | log transfer has been attempted: DONE
[2025-10-12 02:46:49] 2025-10-12 06:46:03,225 | INFO     | job 6839163938 has finished - writing final server update
[2025-10-12 02:46:49] 2025-10-12 06:46:03,225 | INFO     | total number of processed events: 400 (read)
[2025-10-12 02:46:49] 2025-10-12 06:46:03,227 | INFO     | executing command: lscpu
[2025-10-12 02:46:49] 2025-10-12 06:46:03,252 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 02:46:49] 2025-10-12 06:46:03,508 | INFO     | monitor loop #342: job 0:6839163938 is in state 'finished'
[2025-10-12 02:46:49] 2025-10-12 06:46:03,509 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 02:46:49] 2025-10-12 06:46:04,326 | INFO     | time since job start (4588s) is within the limit (172800.0s)
[2025-10-12 02:46:49] 2025-10-12 06:46:06,012 | INFO     | monitor loop #343: job 0:6839163938 is in state 'finished'
[2025-10-12 02:46:49] 2025-10-12 06:46:06,012 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 02:46:49] 2025-10-12 06:46:06,332 | INFO     | time since job start (4590s) is within the limit (172800.0s)
[2025-10-12 02:46:49] 2025-10-12 06:46:08,337 | INFO     | time since job start (4592s) is within the limit (172800.0s)
[2025-10-12 02:46:49] 2025-10-12 06:46:08,515 | INFO     | monitor loop #344: job 0:6839163938 is in state 'finished'
[2025-10-12 02:46:49] 2025-10-12 06:46:08,515 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 02:46:49] 2025-10-12 06:46:09,130 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 02:46:49] 2025-10-12 06:46:09,135 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-10-12 02:46:49] 2025-10-12 06:46:09,137 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839163938/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 02:46:49] 2025-10-12 06:46:09,138 | INFO     | extracted standard info from prmon json
[2025-10-12 02:46:49] 2025-10-12 06:46:09,139 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 02:46:49] 2025-10-12 06:46:09,139 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 02:46:49] 2025-10-12 06:46:09,139 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 02:46:49] 2025-10-12 06:46:09,139 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 02:46:49] 2025-10-12 06:46:09,141 | INFO     | fitting pss+swap vs Time
[2025-10-12 02:46:49] 2025-10-12 06:46:09,141 | INFO     | sum of square deviations: 97479037.0
[2025-10-12 02:46:49] 2025-10-12 06:46:09,142 | INFO     | sum of deviations: -5478866646.0
[2025-10-12 02:46:49] 2025-10-12 06:46:09,142 | INFO     | mean x: 1760249353.5
[2025-10-12 02:46:49] 2025-10-12 06:46:09,142 | INFO     | mean y: 2779813.529411765
[2025-10-12 02:46:49] 2025-10-12 06:46:09,142 | INFO     | -- intersect: 98938630724.06122
[2025-10-12 02:46:49] 2025-10-12 06:46:09,142 | INFO     | intersect: 98938630724.06122
[2025-10-12 02:46:49] 2025-10-12 06:46:09,142 | INFO     | chi2: 0.14679535014642384
[2025-10-12 02:46:49] 2025-10-12 06:46:09,143 | INFO     | -- intersect: 98938630724.06122
[2025-10-12 02:46:49] 2025-10-12 06:46:09,143 | INFO     | current memory leak: -56.21 B/s (using 68 data points, chi2=0.15)
[2025-10-12 02:46:49] 2025-10-12 06:46:09,143 | INFO     | could have reported an average CPU frequency of 2041 MHz (6 samples)
[2025-10-12 02:46:49] 2025-10-12 06:46:09,143 | INFO     | ..............................
[2025-10-12 02:46:49] 2025-10-12 06:46:09,143 | INFO     | . Timing measurements:
[2025-10-12 02:46:49] 2025-10-12 06:46:09,143 | INFO     | . get job = 0 s
[2025-10-12 02:46:49] 2025-10-12 06:46:09,143 | INFO     | . initial setup = 2 s
[2025-10-12 02:46:49] 2025-10-12 06:46:09,144 | INFO     | . payload setup = 7 s
[2025-10-12 02:46:49] 2025-10-12 06:46:09,144 | INFO     | . stage-in = 0 s
[2025-10-12 02:46:49] 2025-10-12 06:46:09,144 | INFO     | . payload execution = 4556 s
[2025-10-12 02:46:49] 2025-10-12 06:46:09,144 | INFO     | . stage-out = 0 s
[2025-10-12 02:46:49] 2025-10-12 06:46:09,144 | INFO     | . log creation = 0 s
[2025-10-12 02:46:49] 2025-10-12 06:46:09,144 | INFO     | ..............................
[2025-10-12 02:46:49] 2025-10-12 06:46:09,231 | INFO     | 
[2025-10-12 02:46:49] 2025-10-12 06:46:09,231 | INFO     | job summary report
[2025-10-12 02:46:49] 2025-10-12 06:46:09,231 | INFO     | --------------------------------------------------
[2025-10-12 02:46:49] 2025-10-12 06:46:09,231 | INFO     | PanDA job id: 6839163938
[2025-10-12 02:46:49] 2025-10-12 06:46:09,231 | INFO     | task id: 46676269
[2025-10-12 02:46:49] 2025-10-12 06:46:09,232 | INFO     | errors: (none)
[2025-10-12 02:46:49] 2025-10-12 06:46:09,232 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 02:46:49] 2025-10-12 06:46:09,232 | INFO     | pilot state: finished 
[2025-10-12 02:46:49] 2025-10-12 06:46:09,232 | INFO     | transexitcode: 0
[2025-10-12 02:46:49] 2025-10-12 06:46:09,232 | INFO     | exeerrorcode: 0
[2025-10-12 02:46:49] 2025-10-12 06:46:09,233 | INFO     | exeerrordiag: 
[2025-10-12 02:46:49] 2025-10-12 06:46:09,233 | INFO     | exitcode: 0
[2025-10-12 02:46:49] 2025-10-12 06:46:09,233 | INFO     | exitmsg: OK
[2025-10-12 02:46:49] 2025-10-12 06:46:09,233 | INFO     | cpuconsumptiontime: 47638 s
[2025-10-12 02:46:49] 2025-10-12 06:46:09,233 | INFO     | nevents: 400
[2025-10-12 02:46:49] 2025-10-12 06:46:09,233 | INFO     | neventsw: 0
[2025-10-12 02:46:49] 2025-10-12 06:46:09,233 | INFO     | pid: 18588
[2025-10-12 02:46:49] 2025-10-12 06:46:09,234 | INFO     | pgrp: 18588
[2025-10-12 02:46:49] 2025-10-12 06:46:09,234 | INFO     | corecount: 12
[2025-10-12 02:46:49] 2025-10-12 06:46:09,234 | INFO     | event service: False
[2025-10-12 02:46:49] 2025-10-12 06:46:09,234 | INFO     | sizes: {0: 2348857, 1: 2348857, 5: 2349147, 11: 2349203, 4567: 2375308, 4568: 2384490, 4576: 2384628}
[2025-10-12 02:46:49] 2025-10-12 06:46:09,234 | INFO     | --------------------------------------------------
[2025-10-12 02:46:49] 2025-10-12 06:46:09,234 | INFO     | 
[2025-10-12 02:46:49] 2025-10-12 06:46:09,235 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 02:46:49] 2025-10-12 06:46:09,259 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 02:46:49] 2025-10-12 06:46:09,259 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 02:46:49] 2025-10-12 06:46:09,259 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 02:46:49] 2025-10-12 06:46:09,260 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 02:46:49] 2025-10-12 06:46:09,260 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 02:46:49] 2025-10-12 06:46:09,260 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 02:46:49] 2025-10-12 06:46:09,260 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 02:46:49] 2025-10-12 06:46:09,260 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 02:46:49] 2025-10-12 06:46:09,260 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 02:46:49] 2025-10-12 06:46:09,261 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 02:46:49] 2025-10-12 06:46:09,261 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 02:46:49] 2025-10-12 06:46:09,261 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 02:46:49] 2025-10-12 06:46:09,261 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 02:46:49] 2025-10-12 06:46:09,261 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 02:46:49] 2025-10-12 06:46:09,261 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 02:46:49] 2025-10-12 06:46:09,262 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 02:46:49] 2025-10-12 06:46:09,262 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 02:46:49] 2025-10-12 06:46:09,262 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 02:46:49] 2025-10-12 06:46:09,262 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 02:46:49] 2025-10-12 06:46:09,262 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 02:46:49] 2025-10-12 06:46:09,263 | INFO     | job 6839163938 has completed (purged errors)
[2025-10-12 02:46:49] 2025-10-12 06:46:09,263 | INFO     | overall cleanup function is called
[2025-10-12 02:46:49] 2025-10-12 06:46:09,454 | INFO     | PID=11677 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 02:46:49] 2025-10-12 06:46:10,271 | INFO     | --- collectZombieJob: --- 10, [18588]
[2025-10-12 02:46:49] 2025-10-12 06:46:10,272 | INFO     | zombie collector waiting for pid 18588
[2025-10-12 02:46:49] 2025-10-12 06:46:10,272 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 02:46:49] 2025-10-12 06:46:10,272 | INFO     | collected zombie processes
[2025-10-12 02:46:49] 2025-10-12 06:46:10,272 | INFO     | will attempt to kill all subprocesses of pid=18588
[2025-10-12 02:46:49] 2025-10-12 06:46:10,362 | INFO     | process IDs to be killed: [18588] (in reverse order)
[2025-10-12 02:46:49] 2025-10-12 06:46:10,444 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 02:46:49] 2025-10-12 06:46:10,445 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 02:46:49] 2025-10-12 06:46:10,448 | INFO     | did not find any defunct processes belonging to 18588
[2025-10-12 02:46:49] 2025-10-12 06:46:10,450 | INFO     | did not find any defunct processes belonging to 18588
[2025-10-12 02:46:49] 2025-10-12 06:46:10,451 | INFO     | ready for new job
[2025-10-12 02:46:49] 2025-10-12 06:46:10,451 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 02:46:49] 2025-10-12 06:46:10,452 | INFO     | ***************************************
[2025-10-12 02:46:49] 2025-10-12 06:46:10,453 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 02:46:49] 2025-10-12 06:46:10,453 | INFO     | ***************************************
[2025-10-12 02:46:49] 2025-10-12 06:46:10,453 | INFO     | 
[2025-10-12 02:46:49] 2025-10-12 06:46:10,453 | INFO     | architecture information:
[2025-10-12 02:46:49] 2025-10-12 06:46:10,454 | INFO     | executing command: cat /etc/os-release
[2025-10-12 02:46:49] 2025-10-12 06:46:10,470 | INFO     | cat /etc/os-release:
[2025-10-12 02:46:49] NAME="CentOS Linux"
[2025-10-12 02:46:49] VERSION="7 (Core)"
[2025-10-12 02:46:49] ID="centos"
[2025-10-12 02:46:49] ID_LIKE="rhel fedora"
[2025-10-12 02:46:49] VERSION_ID="7"
[2025-10-12 02:46:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 02:46:49] ANSI_COLOR="0;31"
[2025-10-12 02:46:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 02:46:49] HOME_URL="https://www.centos.org/"
[2025-10-12 02:46:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 02:46:49] 
[2025-10-12 02:46:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 02:46:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 02:46:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 02:46:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 02:46:49] 
[2025-10-12 02:46:49] 2025-10-12 06:46:10,470 | INFO     | ***************************************
[2025-10-12 02:46:49] 2025-10-12 06:46:10,973 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 02:46:49] 2025-10-12 06:46:10,991 | INFO     | sufficient remaining disk space (29360128000 B)
[2025-10-12 02:46:49] 2025-10-12 06:46:10,991 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 02:46:49] 2025-10-12 06:46:10,992 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 02:46:49] 2025-10-12 06:46:10,992 | INFO     | update_server=False
[2025-10-12 02:46:49] 2025-10-12 06:46:10,992 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 02:46:49] 2025-10-12 06:46:10,992 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 02:46:49] 2025-10-12 06:46:11,035 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 02:46:49] 2025-10-12 06:46:11,035 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 02:46:49] 2025-10-12 06:46:11,035 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 02:46:49] 2025-10-12 06:46:11,035 | INFO     | will abort loop
[2025-10-12 02:46:49] 2025-10-12 06:46:11,104 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 02:46:49] 2025-10-12 06:46:11,180 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 02:46:49] 2025-10-12 06:46:11,228 | INFO     | all data control threads have been joined
[2025-10-12 02:46:49] 2025-10-12 06:46:11,998 | INFO     | [job] retrieve thread has finished
[2025-10-12 02:46:49] 2025-10-12 06:46:11,998 | INFO     | [job] queue monitor thread has finished
[2025-10-12 02:46:49] 2025-10-12 06:46:12,014 | INFO     | [payload] failed_post thread has finished
[2025-10-12 02:46:49] 2025-10-12 06:46:12,041 | INFO     | [job] job monitor thread has finished
[2025-10-12 02:46:49] 2025-10-12 06:46:12,234 | INFO     | [data] control thread has finished
[2025-10-12 02:46:49] 2025-10-12 06:46:12,331 | INFO     | all payload control threads have been joined
[2025-10-12 02:46:49] 2025-10-12 06:46:12,443 | INFO     | all job control threads have been joined
[2025-10-12 02:46:49] 2025-10-12 06:46:12,675 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 02:46:49] 2025-10-12 06:46:12,827 | INFO     | [job] validate thread has finished
[2025-10-12 02:46:49] 2025-10-12 06:46:12,838 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 02:46:49] 2025-10-12 06:46:13,110 | INFO     | [data] copytool_out thread has finished
[2025-10-12 02:46:49] 2025-10-12 06:46:13,230 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 02:46:49] 2025-10-12 06:46:13,230 | INFO     | [data] copytool_in thread has finished
[2025-10-12 02:46:49] 2025-10-12 06:46:13,336 | INFO     | [payload] control thread has finished
[2025-10-12 02:46:49] 2025-10-12 06:46:13,448 | INFO     | [job] control thread has finished
[2025-10-12 02:46:49] 2025-10-12 06:46:13,551 | INFO     | [payload] validate_post thread has finished
[2025-10-12 02:46:49] 2025-10-12 06:46:15,186 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 02:46:49] 2025-10-12 06:46:21,256 | INFO     | job.realtimelogging is not enabled
[2025-10-12 02:46:49] 2025-10-12 06:46:22,261 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 02:46:49] 2025-10-12 06:46:41,653 | INFO     | PID=11677 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 02:46:49] 2025-10-12 06:46:41,653 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 02:46:49] 2025-10-12 06:46:41,654 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 02:46:49] 2025-10-12 06:46:41,654 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 02:46:49] 2025-10-12 06:46:43,435 | INFO     | [monitor] cgroup control has ended
[2025-10-12 02:46:49] 2025-10-12 06:46:43,667 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140430768142144)>', '<ExcThread(monitor, started 140430045861632)>']
[2025-10-12 02:46:49] 2025-10-12 06:46:44,669 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 02:46:49] 2025-10-12 06:46:44,669 | INFO     | [monitor] control thread has ended
[2025-10-12 02:46:49] 2025-10-12 06:46:48,692 | INFO     | all workflow threads have been joined
[2025-10-12 02:46:49] 2025-10-12 06:46:48,692 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 02:46:49] 2025-10-12 06:46:48,693 | INFO     | traces error code: 0
[2025-10-12 02:46:49] 2025-10-12 06:46:48,693 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 02:46:49] 2025-10-12 06:46:48,795 [wrapper] ==== pilot stdout END ====
[2025-10-12 02:46:49] 2025-10-12 06:46:48,799 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 02:46:49] 2025-10-12 06:46:48,803 [wrapper] pilotpid: 11677
[2025-10-12 02:46:49] 2025-10-12 06:46:48,807 [wrapper] Pilot exit status: 0
[2025-10-12 02:46:49] 2025-10-12 06:46:48,823 [wrapper] pandaids: 6839163938
[2025-10-12 02:46:49] 2025-10-12 06:46:48,861 [wrapper] cleanup supervisor_pilot 32727 11678
[2025-10-12 02:46:49] 2025-10-12 06:46:48,865 [wrapper] Test setup, not cleaning
[2025-10-12 02:46:49] 2025-10-12 06:46:48,869 [wrapper] apfmon messages muted
[2025-10-12 02:46:49] 2025-10-12 06:46:48,873 [wrapper] ==== wrapper stdout END ====
[2025-10-12 02:46:49] 2025-10-12 06:46:48,877 [wrapper] ==== wrapper stderr END ====
[2025-10-12 02:46:49]  *** Error codes and diagnostics ***
[2025-10-12 02:46:49]     "exeErrorCode": 0,
[2025-10-12 02:46:49]     "exeErrorDiag": "",
[2025-10-12 02:46:49]     "pilotErrorCode": 0,
[2025-10-12 02:46:49]     "pilotErrorDiag": "",
[2025-10-12 02:46:49]  *** Listing of results directory ***
[2025-10-12 02:46:49] total 415388
[2025-10-12 02:46:49] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 20:05 pilot3.tar.gz
[2025-10-12 02:46:49] -rwx------ 1 boincer umatlas     36292 Oct 11 20:27 runpilot2-wrapper.sh
[2025-10-12 02:46:49] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 20:27 queuedata.json
[2025-10-12 02:46:49] -rw-r--r-- 1 boincer umatlas       100 Oct 12 01:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 02:46:49] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 01:29 run_atlas
[2025-10-12 02:46:49] -rw-r--r-- 1 boincer umatlas       105 Oct 12 01:29 job.xml
[2025-10-12 02:46:49] -rw-r--r-- 2 boincer umatlas 221450331 Oct 12 01:29 EVNT.46676267._002770.pool.root.1
[2025-10-12 02:46:49] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 01:29 start_atlas.sh
[2025-10-12 02:46:49] drwxrwx--x 2 boincer umatlas      4096 Oct 12 01:29 shared
[2025-10-12 02:46:49] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 01:29 input.tar.gz
[2025-10-12 02:46:49] -rw-r--r-- 1 boincer umatlas         0 Oct 12 01:29 boinc_lockfile
[2025-10-12 02:46:49] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 01:29 pandaJob.out
[2025-10-12 02:46:49] -rw------- 1 boincer umatlas    975528 Oct 12 01:29 agis_schedconf.cvmfs.json
[2025-10-12 02:46:49] -rw------- 1 boincer umatlas   1560580 Oct 12 01:29 agis_ddmendpoints.agis.ALL.json
[2025-10-12 02:46:49] drwx------ 5 boincer umatlas      4096 Oct 12 01:29 pilot3
[2025-10-12 02:46:49] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 02:38 init_data.xml
[2025-10-12 02:46:49] -rw------- 1 boincer umatlas 197889791 Oct 12 02:45 HITS.46676269._067642.pool.root.1
[2025-10-12 02:46:49] -rw-r--r-- 1 boincer umatlas       529 Oct 12 02:45 boinc_task_state.xml
[2025-10-12 02:46:49] -rw------- 1 boincer umatlas      1048 Oct 12 02:45 memory_monitor_summary.json
[2025-10-12 02:46:49] -rw------- 1 boincer umatlas    394082 Oct 12 02:46 log.46676269._067642.job.log.tgz.1
[2025-10-12 02:46:49] -rw------- 1 boincer umatlas      7858 Oct 12 02:46 heartbeat.json
[2025-10-12 02:46:49] -rw------- 1 boincer umatlas        95 Oct 12 02:46 pilot_heartbeat.json
[2025-10-12 02:46:49] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 02:46 boinc_mmap_file
[2025-10-12 02:46:49] -rw-r--r-- 1 boincer umatlas        27 Oct 12 02:46 wrapper_checkpoint.txt
[2025-10-12 02:46:49] -rw------- 1 boincer umatlas      5004 Oct 12 02:46 pilotlog.txt
[2025-10-12 02:46:49] -rw------- 1 boincer umatlas    665210 Oct 12 02:46 log.46676269._067642.job.log.1
[2025-10-12 02:46:49] -rw------- 1 boincer umatlas       357 Oct 12 02:46 output.list
[2025-10-12 02:46:49] -rw-r--r-- 1 boincer umatlas       620 Oct 12 02:46 runtime_log
[2025-10-12 02:46:49] -rw------- 1 boincer umatlas   1075200 Oct 12 02:46 result.tar.gz
[2025-10-12 02:46:49] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 02:46 runtime_log.err
[2025-10-12 02:46:49] -rw------- 1 boincer umatlas       659 Oct 12 02:46 1FhNDm66yR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmHrSMDmSCVDym.diag
[2025-10-12 02:46:49] -rw-r--r-- 1 boincer umatlas     22328 Oct 12 02:46 stderr.txt
[2025-10-12 02:46:49] HITS file was successfully produced:
[2025-10-12 02:46:49] -rw------- 1 boincer umatlas 197889791 Oct 12 02:45 shared/HITS.pool.root.1
[2025-10-12 02:46:49]  *** Contents of shared directory: ***
[2025-10-12 02:46:49] total 411144
[2025-10-12 02:46:49] -rw-r--r-- 2 boincer umatlas 221450331 Oct 12 01:29 ATLAS.root_0
[2025-10-12 02:46:49] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 01:29 start_atlas.sh
[2025-10-12 02:46:49] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 01:29 input.tar.gz
[2025-10-12 02:46:49] -rw------- 1 boincer umatlas 197889791 Oct 12 02:45 HITS.pool.root.1
[2025-10-12 02:46:49] -rw------- 1 boincer umatlas   1075200 Oct 12 02:46 result.tar.gz
02:46:50 (7606): run_atlas exited; CPU time 47618.789647
02:46:50 (7606): called boinc_finish(0)

</stderr_txt>
]]>

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