Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:24:09 (26112): wrapper (7.7.26015): starting
01:24:09 (26112): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 01:24:09] Arguments: --nthreads 12
[2025-10-12 01:24:09] Threads: 12
[2025-10-12 01:24:09] Checking for CVMFS
[2025-10-12 01:24:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 01:24:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 01:24:09] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 01:24:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 01:24:10] 2.11.2.0 2984 222411 99320 151609 0 56 14012174 20275201 1 130560 1 109331049 99.984 13354362 12613 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 01:24:10] CVMFS is ok
[2025-10-12 01:24:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 01:24:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 01:24:10] Further information can be found at the LHC@home message board.
[2025-10-12 01:24:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 01:24:10] Checking for apptainer binary...
[2025-10-12 01:24:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 01:24:10] Running /usr/bin/apptainer --version
[2025-10-12 01:24:10] apptainer version 1.3.2-1.el7
[2025-10-12 01:24:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 01:24:11] c-205-26.aglt2.org
[2025-10-12 01:24:11] apptainer works
[2025-10-12 01:24:11] Set ATHENA_PROC_NUMBER=12
[2025-10-12 01:24:11] Set ATHENA_CORE_NUMBER=12
[2025-10-12 01:24:11] Starting ATLAS job with PandaID=6828898912
[2025-10-12 01:24:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 02:28:38]  *** The last 200 lines of the pilot log: ***
[2025-10-12 02:28:38]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 02:28:38]  replicas=None
[2025-10-12 02:28:38]  scope=mc23_13p6TeV
[2025-10-12 02:28:38]  status=None
[2025-10-12 02:28:38]  status_code=0
[2025-10-12 02:28:38]  storage_token=
[2025-10-12 02:28:38]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6828898912/log.46376905._047080.job.log.tgz.1
[2025-10-12 02:28:38]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ed/8a/log.46376905._047080.job.log.tgz.1
[2025-10-12 02:28:38]  workdir=None
[2025-10-12 02:28:38] ]
[2025-10-12 02:28:38] 2025-10-12 06:27:52,987 | INFO     | transferring file log.46376905._047080.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6828898912/log.46376905._047080.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 02:28:38] 2025-10-12 06:27:52,987 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6828898912/log.46376905._047080.job.log.tgz.1 /tmp/boinchome/slots/0/log.46376905._047080.job
[2025-10-12 02:28:38] 2025-10-12 06:27:53,011 | INFO     | adding to output.list: log.46376905._047080.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ed/8a/log.46376905._047080.job.log.tg
[2025-10-12 02:28:38] 2025-10-12 06:27:53,012 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 02:28:38] 2025-10-12 06:27:53,012 | INFO     | summary of transferred files:
[2025-10-12 02:28:38] 2025-10-12 06:27:53,012 | INFO     |  -- lfn=log.46376905._047080.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 02:28:38] 2025-10-12 06:27:53,012 | INFO     | stage-out finished correctly
[2025-10-12 02:28:38] 2025-10-12 06:27:53,754 | INFO     | monitor loop #286: job 0:6828898912 is in state 'finished'
[2025-10-12 02:28:38] 2025-10-12 06:27:53,755 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 02:28:38] 2025-10-12 06:27:54,357 | INFO     | time since job start (3808s) is within the limit (172800.0s)
[2025-10-12 02:28:38] 2025-10-12 06:27:54,728 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 02:28:38] 2025-10-12 06:27:54,981 | INFO     | job 6828898912 has state=finished
[2025-10-12 02:28:38] 2025-10-12 06:27:54,981 | INFO     | preparing for final server update for job 6828898912 in state='finished'
[2025-10-12 02:28:38] 2025-10-12 06:27:54,982 | INFO     | this job has now completed (state=finished)
[2025-10-12 02:28:38] 2025-10-12 06:27:54,982 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 02:28:38] 2025-10-12 06:27:54,982 | INFO     | log transfer has been attempted: DONE
[2025-10-12 02:28:38] 2025-10-12 06:27:54,982 | INFO     | job 6828898912 has finished - writing final server update
[2025-10-12 02:28:38] 2025-10-12 06:27:54,983 | INFO     | total number of processed events: 400 (read)
[2025-10-12 02:28:38] 2025-10-12 06:27:54,983 | INFO     | executing command: lscpu
[2025-10-12 02:28:38] 2025-10-12 06:27:55,010 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 02:28:38] 2025-10-12 06:27:56,263 | INFO     | monitor loop #287: job 0:6828898912 is in state 'finished'
[2025-10-12 02:28:38] 2025-10-12 06:27:56,263 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 02:28:38] 2025-10-12 06:27:56,362 | INFO     | time since job start (3810s) is within the limit (172800.0s)
[2025-10-12 02:28:38] 2025-10-12 06:27:58,368 | INFO     | time since job start (3812s) is within the limit (172800.0s)
[2025-10-12 02:28:38] 2025-10-12 06:27:58,766 | INFO     | monitor loop #288: job 0:6828898912 is in state 'finished'
[2025-10-12 02:28:38] 2025-10-12 06:27:58,766 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 02:28:38] 2025-10-12 06:27:59,489 | INFO     | PID=29789 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 02:28:38] 2025-10-12 06:27:59,699 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 02:28:38] 2025-10-12 06:27:59,702 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1795.5833333333333
[2025-10-12 02:28:38] 2025-10-12 06:27:59,704 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6828898912/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 02:28:38] 2025-10-12 06:27:59,705 | INFO     | extracted standard info from prmon json
[2025-10-12 02:28:38] 2025-10-12 06:27:59,705 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 02:28:38] 2025-10-12 06:27:59,705 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 02:28:38] 2025-10-12 06:27:59,705 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 02:28:38] 2025-10-12 06:27:59,705 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 02:28:38] 2025-10-12 06:27:59,707 | INFO     | fitting pss+swap vs Time
[2025-10-12 02:28:38] 2025-10-12 06:27:59,707 | INFO     | sum of square deviations: 51573060.0
[2025-10-12 02:28:38] 2025-10-12 06:27:59,707 | INFO     | sum of deviations: -5012094768.0
[2025-10-12 02:28:38] 2025-10-12 06:27:59,707 | INFO     | mean x: 1760248647.0
[2025-10-12 02:28:38] 2025-10-12 06:27:59,707 | INFO     | mean y: 2834291.036363636
[2025-10-12 02:28:38] 2025-10-12 06:27:59,708 | INFO     | -- intersect: 171071470396.937
[2025-10-12 02:28:38] 2025-10-12 06:27:59,708 | INFO     | intersect: 171071470396.937
[2025-10-12 02:28:38] 2025-10-12 06:27:59,708 | INFO     | chi2: 0.08798296056000281
[2025-10-12 02:28:38] 2025-10-12 06:27:59,708 | INFO     | -- intersect: 171071470396.937
[2025-10-12 02:28:38] 2025-10-12 06:27:59,708 | INFO     | current memory leak: -97.18 B/s (using 55 data points, chi2=0.09)
[2025-10-12 02:28:38] 2025-10-12 06:27:59,708 | INFO     | could have reported an average CPU frequency of 2006 MHz (6 samples)
[2025-10-12 02:28:38] 2025-10-12 06:27:59,709 | INFO     | ..............................
[2025-10-12 02:28:38] 2025-10-12 06:27:59,709 | INFO     | . Timing measurements:
[2025-10-12 02:28:38] 2025-10-12 06:27:59,709 | INFO     | . get job = 0 s
[2025-10-12 02:28:38] 2025-10-12 06:27:59,709 | INFO     | . initial setup = 2 s
[2025-10-12 02:28:38] 2025-10-12 06:27:59,709 | INFO     | . payload setup = 7 s
[2025-10-12 02:28:38] 2025-10-12 06:27:59,709 | INFO     | . stage-in = 0 s
[2025-10-12 02:28:38] 2025-10-12 06:27:59,709 | INFO     | . payload execution = 3778 s
[2025-10-12 02:28:38] 2025-10-12 06:27:59,709 | INFO     | . stage-out = 0 s
[2025-10-12 02:28:38] 2025-10-12 06:27:59,709 | INFO     | . log creation = 0 s
[2025-10-12 02:28:38] 2025-10-12 06:27:59,709 | INFO     | ..............................
[2025-10-12 02:28:38] 2025-10-12 06:27:59,794 | INFO     | 
[2025-10-12 02:28:38] 2025-10-12 06:27:59,794 | INFO     | job summary report
[2025-10-12 02:28:38] 2025-10-12 06:27:59,794 | INFO     | --------------------------------------------------
[2025-10-12 02:28:38] 2025-10-12 06:27:59,794 | INFO     | PanDA job id: 6828898912
[2025-10-12 02:28:38] 2025-10-12 06:27:59,794 | INFO     | task id: 46376905
[2025-10-12 02:28:38] 2025-10-12 06:27:59,794 | INFO     | errors: (none)
[2025-10-12 02:28:38] 2025-10-12 06:27:59,794 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 02:28:38] 2025-10-12 06:27:59,795 | INFO     | pilot state: finished 
[2025-10-12 02:28:38] 2025-10-12 06:27:59,795 | INFO     | transexitcode: 0
[2025-10-12 02:28:38] 2025-10-12 06:27:59,795 | INFO     | exeerrorcode: 0
[2025-10-12 02:28:38] 2025-10-12 06:27:59,795 | INFO     | exeerrordiag: 
[2025-10-12 02:28:38] 2025-10-12 06:27:59,795 | INFO     | exitcode: 0
[2025-10-12 02:28:38] 2025-10-12 06:27:59,795 | INFO     | exitmsg: OK
[2025-10-12 02:28:38] 2025-10-12 06:27:59,795 | INFO     | cpuconsumptiontime: 40062 s
[2025-10-12 02:28:38] 2025-10-12 06:27:59,795 | INFO     | nevents: 400
[2025-10-12 02:28:38] 2025-10-12 06:27:59,795 | INFO     | neventsw: 0
[2025-10-12 02:28:38] 2025-10-12 06:27:59,796 | INFO     | pid: 3927
[2025-10-12 02:28:38] 2025-10-12 06:27:59,796 | INFO     | pgrp: 3927
[2025-10-12 02:28:38] 2025-10-12 06:27:59,796 | INFO     | corecount: 12
[2025-10-12 02:28:38] 2025-10-12 06:27:59,796 | INFO     | event service: False
[2025-10-12 02:28:38] 2025-10-12 06:27:59,796 | INFO     | sizes: {0: 2348816, 5: 2349078, 11: 2349134, 3788: 2374885, 3790: 2383883, 3792: 2383939, 3797: 2384261}
[2025-10-12 02:28:38] 2025-10-12 06:27:59,796 | INFO     | --------------------------------------------------
[2025-10-12 02:28:38] 2025-10-12 06:27:59,796 | INFO     | 
[2025-10-12 02:28:38] 2025-10-12 06:27:59,796 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 02:28:38] 2025-10-12 06:27:59,819 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 02:28:38] 2025-10-12 06:27:59,819 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 02:28:38] 2025-10-12 06:27:59,820 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 02:28:38] 2025-10-12 06:27:59,820 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 02:28:38] 2025-10-12 06:27:59,820 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 02:28:38] 2025-10-12 06:27:59,820 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 02:28:38] 2025-10-12 06:27:59,820 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 02:28:38] 2025-10-12 06:27:59,820 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 02:28:38] 2025-10-12 06:27:59,821 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 02:28:38] 2025-10-12 06:27:59,821 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 02:28:38] 2025-10-12 06:27:59,821 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 02:28:38] 2025-10-12 06:27:59,821 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 02:28:38] 2025-10-12 06:27:59,821 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 02:28:38] 2025-10-12 06:27:59,821 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 02:28:38] 2025-10-12 06:27:59,822 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 02:28:38] 2025-10-12 06:27:59,822 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 02:28:38] 2025-10-12 06:27:59,822 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 02:28:38] 2025-10-12 06:27:59,822 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 02:28:38] 2025-10-12 06:27:59,822 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 02:28:38] 2025-10-12 06:27:59,823 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 02:28:38] 2025-10-12 06:27:59,823 | INFO     | job 6828898912 has completed (purged errors)
[2025-10-12 02:28:38] 2025-10-12 06:27:59,823 | INFO     | overall cleanup function is called
[2025-10-12 02:28:38] 2025-10-12 06:28:00,831 | INFO     | --- collectZombieJob: --- 10, [3927]
[2025-10-12 02:28:38] 2025-10-12 06:28:00,831 | INFO     | zombie collector waiting for pid 3927
[2025-10-12 02:28:38] 2025-10-12 06:28:00,832 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 02:28:38] 2025-10-12 06:28:00,832 | INFO     | collected zombie processes
[2025-10-12 02:28:38] 2025-10-12 06:28:00,832 | INFO     | will attempt to kill all subprocesses of pid=3927
[2025-10-12 02:28:38] 2025-10-12 06:28:00,923 | INFO     | process IDs to be killed: [3927] (in reverse order)
[2025-10-12 02:28:38] 2025-10-12 06:28:00,983 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 02:28:38] 2025-10-12 06:28:00,983 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 02:28:38] 2025-10-12 06:28:00,987 | INFO     | did not find any defunct processes belonging to 3927
[2025-10-12 02:28:38] 2025-10-12 06:28:00,989 | INFO     | did not find any defunct processes belonging to 3927
[2025-10-12 02:28:38] 2025-10-12 06:28:00,989 | INFO     | ready for new job
[2025-10-12 02:28:38] 2025-10-12 06:28:00,989 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 02:28:38] 2025-10-12 06:28:00,990 | INFO     | ***************************************
[2025-10-12 02:28:38] 2025-10-12 06:28:00,990 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-12 02:28:38] 2025-10-12 06:28:00,990 | INFO     | ***************************************
[2025-10-12 02:28:38] 2025-10-12 06:28:00,990 | INFO     | 
[2025-10-12 02:28:38] 2025-10-12 06:28:00,991 | INFO     | architecture information:
[2025-10-12 02:28:38] 2025-10-12 06:28:00,991 | INFO     | executing command: cat /etc/os-release
[2025-10-12 02:28:38] 2025-10-12 06:28:01,006 | INFO     | cat /etc/os-release:
[2025-10-12 02:28:38] NAME="CentOS Linux"
[2025-10-12 02:28:38] VERSION="7 (Core)"
[2025-10-12 02:28:38] ID="centos"
[2025-10-12 02:28:38] ID_LIKE="rhel fedora"
[2025-10-12 02:28:38] VERSION_ID="7"
[2025-10-12 02:28:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 02:28:38] ANSI_COLOR="0;31"
[2025-10-12 02:28:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 02:28:38] HOME_URL="https://www.centos.org/"
[2025-10-12 02:28:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 02:28:38] 
[2025-10-12 02:28:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 02:28:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 02:28:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 02:28:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 02:28:38] 
[2025-10-12 02:28:38] 2025-10-12 06:28:01,006 | INFO     | ***************************************
[2025-10-12 02:28:38] 2025-10-12 06:28:01,509 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 02:28:38] 2025-10-12 06:28:01,528 | INFO     | sufficient remaining disk space (29397876736 B)
[2025-10-12 02:28:38] 2025-10-12 06:28:01,528 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 02:28:38] 2025-10-12 06:28:01,528 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 02:28:38] 2025-10-12 06:28:01,528 | INFO     | update_server=False
[2025-10-12 02:28:38] 2025-10-12 06:28:01,529 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 02:28:38] 2025-10-12 06:28:01,529 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 02:28:38] 2025-10-12 06:28:01,529 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 02:28:38] 2025-10-12 06:28:01,530 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 02:28:38] 2025-10-12 06:28:01,676 | INFO     | all data control threads have been joined
[2025-10-12 02:28:38] 2025-10-12 06:28:02,281 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 02:28:38] 2025-10-12 06:28:02,281 | INFO     | aborting loop
[2025-10-12 02:28:38] 2025-10-12 06:28:02,310 | INFO     | all payload control threads have been joined
[2025-10-12 02:28:38] 2025-10-12 06:28:02,339 | INFO     | all job control threads have been joined
[2025-10-12 02:28:38] 2025-10-12 06:28:02,534 | INFO     | [job] retrieve thread has finished
[2025-10-12 02:28:38] 2025-10-12 06:28:02,535 | INFO     | [job] queue monitor thread has finished
[2025-10-12 02:28:38] 2025-10-12 06:28:02,552 | INFO     | [payload] failed_post thread has finished
[2025-10-12 02:28:38] 2025-10-12 06:28:02,681 | INFO     | [data] control thread has finished
[2025-10-12 02:28:38] 2025-10-12 06:28:03,064 | INFO     | [job] validate thread has finished
[2025-10-12 02:28:38] 2025-10-12 06:28:03,216 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 02:28:38] 2025-10-12 06:28:03,286 | INFO     | [job] job monitor thread has finished
[2025-10-12 02:28:38] 2025-10-12 06:28:03,316 | INFO     | [payload] control thread has finished
[2025-10-12 02:28:38] 2025-10-12 06:28:03,319 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 02:28:38] 2025-10-12 06:28:03,344 | INFO     | [job] control thread has finished
[2025-10-12 02:28:38] 2025-10-12 06:28:03,394 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 02:28:38] 2025-10-12 06:28:03,453 | INFO     | [payload] validate_post thread has finished
[2025-10-12 02:28:38] 2025-10-12 06:28:03,535 | INFO     | [data] copytool_out thread has finished
[2025-10-12 02:28:38] 2025-10-12 06:28:03,640 | INFO     | [data] copytool_in thread has finished
[2025-10-12 02:28:38] 2025-10-12 06:28:03,984 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 02:28:38] 2025-10-12 06:28:05,536 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 02:28:38] 2025-10-12 06:28:31,693 | INFO     | PID=29789 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 02:28:38] 2025-10-12 06:28:31,694 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 02:28:38] 2025-10-12 06:28:31,694 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 02:28:38] 2025-10-12 06:28:31,694 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 02:28:38] 2025-10-12 06:28:31,866 | INFO     | [monitor] cgroup control has ended
[2025-10-12 02:28:38] 2025-10-12 06:28:33,250 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140372844156736)>', '<ExcThread(monitor, started 140372265129728)>']
[2025-10-12 02:28:38] 2025-10-12 06:28:33,704 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 02:28:38] 2025-10-12 06:28:33,704 | INFO     | [monitor] control thread has ended
[2025-10-12 02:28:38] 2025-10-12 06:28:38,286 | INFO     | all workflow threads have been joined
[2025-10-12 02:28:38] 2025-10-12 06:28:38,293 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 02:28:38] 2025-10-12 06:28:38,294 | INFO     | traces error code: 0
[2025-10-12 02:28:38] 2025-10-12 06:28:38,294 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 02:28:38] 2025-10-12 06:28:38,379 [wrapper] ==== pilot stdout END ====
[2025-10-12 02:28:38] 2025-10-12 06:28:38,383 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 02:28:38] 2025-10-12 06:28:38,386 [wrapper] pilotpid: 29789
[2025-10-12 02:28:38] 2025-10-12 06:28:38,389 [wrapper] Pilot exit status: 0
[2025-10-12 02:28:38] 2025-10-12 06:28:38,404 [wrapper] pandaids: 6828898912
[2025-10-12 02:28:38] 2025-10-12 06:28:38,443 [wrapper] cleanup supervisor_pilot 18180 29790
[2025-10-12 02:28:38] 2025-10-12 06:28:38,447 [wrapper] Test setup, not cleaning
[2025-10-12 02:28:38] 2025-10-12 06:28:38,451 [wrapper] apfmon messages muted
[2025-10-12 02:28:38] 2025-10-12 06:28:38,454 [wrapper] ==== wrapper stdout END ====
[2025-10-12 02:28:38] 2025-10-12 06:28:38,458 [wrapper] ==== wrapper stderr END ====
[2025-10-12 02:28:38]  *** Error codes and diagnostics ***
[2025-10-12 02:28:38]     "exeErrorCode": 0,
[2025-10-12 02:28:38]     "exeErrorDiag": "",
[2025-10-12 02:28:38]     "pilotErrorCode": 0,
[2025-10-12 02:28:38]     "pilotErrorDiag": "",
[2025-10-12 02:28:38]  *** Listing of results directory ***
[2025-10-12 02:28:38] total 386436
[2025-10-12 02:28:38] -rw-r--r-- 1 boincer umatlas    552446 Oct  3 18:08 pilot3.tar.gz
[2025-10-12 02:28:38] -rwx------ 1 boincer umatlas     36292 Oct  3 18:15 runpilot2-wrapper.sh
[2025-10-12 02:28:38] -rw-r--r-- 1 boincer umatlas      5112 Oct  3 18:15 queuedata.json
[2025-10-12 02:28:38] -rw-r--r-- 1 boincer umatlas       100 Oct 12 01:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 02:28:38] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 01:24 run_atlas
[2025-10-12 02:28:38] -rw-r--r-- 1 boincer umatlas       105 Oct 12 01:24 job.xml
[2025-10-12 02:28:38] -rw-r--r-- 2 boincer umatlas 213730356 Oct 12 01:24 EVNT.46376901._001649.pool.root.1
[2025-10-12 02:28:38] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 01:24 start_atlas.sh
[2025-10-12 02:28:38] drwxrwx--x 2 boincer umatlas      4096 Oct 12 01:24 shared
[2025-10-12 02:28:38] -rw-r--r-- 2 boincer umatlas    565601 Oct 12 01:24 input.tar.gz
[2025-10-12 02:28:38] -rw-r--r-- 1 boincer umatlas         0 Oct 12 01:24 boinc_lockfile
[2025-10-12 02:28:38] -rw-r--r-- 1 boincer umatlas      2519 Oct 12 01:24 pandaJob.out
[2025-10-12 02:28:38] -rw------- 1 boincer umatlas    975528 Oct 12 01:24 agis_schedconf.cvmfs.json
[2025-10-12 02:28:38] -rw------- 1 boincer umatlas   1560580 Oct 12 01:24 agis_ddmendpoints.agis.ALL.json
[2025-10-12 02:28:38] drwx------ 4 boincer umatlas      4096 Oct 12 01:24 pilot3
[2025-10-12 02:28:38] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 02:20 init_data.xml
[2025-10-12 02:28:38] -rw------- 1 boincer umatlas 176217012 Oct 12 02:27 HITS.46376905._047080.pool.root.1
[2025-10-12 02:28:38] -rw-r--r-- 1 boincer umatlas       529 Oct 12 02:27 boinc_task_state.xml
[2025-10-12 02:28:38] -rw------- 1 boincer umatlas      1061 Oct 12 02:27 memory_monitor_summary.json
[2025-10-12 02:28:38] -rw------- 1 boincer umatlas    375744 Oct 12 02:27 log.46376905._047080.job.log.tgz.1
[2025-10-12 02:28:38] -rw------- 1 boincer umatlas      7859 Oct 12 02:27 heartbeat.json
[2025-10-12 02:28:38] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 02:28 boinc_mmap_file
[2025-10-12 02:28:38] -rw-r--r-- 1 boincer umatlas        27 Oct 12 02:28 wrapper_checkpoint.txt
[2025-10-12 02:28:38] -rw------- 1 boincer umatlas        95 Oct 12 02:28 pilot_heartbeat.json
[2025-10-12 02:28:38] -rw------- 1 boincer umatlas      4746 Oct 12 02:28 pilotlog.txt
[2025-10-12 02:28:38] -rw------- 1 boincer umatlas    561306 Oct 12 02:28 log.46376905._047080.job.log.1
[2025-10-12 02:28:38] -rw------- 1 boincer umatlas       357 Oct 12 02:28 output.list
[2025-10-12 02:28:38] -rw-r--r-- 1 boincer umatlas       620 Oct 12 02:28 runtime_log
[2025-10-12 02:28:38] -rw------- 1 boincer umatlas    952320 Oct 12 02:28 result.tar.gz
[2025-10-12 02:28:38] -rw------- 1 boincer umatlas       659 Oct 12 02:28 ygULDmyE3O8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmVEJNDmWIafJn.diag
[2025-10-12 02:28:38] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 02:28 runtime_log.err
[2025-10-12 02:28:38] -rw-r--r-- 1 boincer umatlas     21962 Oct 12 02:28 stderr.txt
[2025-10-12 02:28:38] HITS file was successfully produced:
[2025-10-12 02:28:38] -rw------- 1 boincer umatlas 176217012 Oct 12 02:27 shared/HITS.pool.root.1
[2025-10-12 02:28:38]  *** Contents of shared directory: ***
[2025-10-12 02:28:38] total 382320
[2025-10-12 02:28:38] -rw-r--r-- 2 boincer umatlas 213730356 Oct 12 01:24 ATLAS.root_0
[2025-10-12 02:28:38] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 01:24 start_atlas.sh
[2025-10-12 02:28:38] -rw-r--r-- 2 boincer umatlas    565601 Oct 12 01:24 input.tar.gz
[2025-10-12 02:28:38] -rw------- 1 boincer umatlas 176217012 Oct 12 02:27 HITS.pool.root.1
[2025-10-12 02:28:38] -rw------- 1 boincer umatlas    952320 Oct 12 02:28 result.tar.gz
02:28:39 (26112): run_atlas exited; CPU time 40028.259547
02:28:39 (26112): called boinc_finish(0)

</stderr_txt>
]]>

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