Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:10:15 (2719790): wrapper (7.7.26015): starting
17:10:15 (2719790): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 17:10:15] Arguments: --nthreads 3
[2025-10-12 17:10:15] Threads: 3
[2025-10-12 17:10:15] Checking for CVMFS
[2025-10-12 17:10:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 17:10:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 17:10:15] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 17:10:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 17:10:15] 2.9.2.0 1484052 4389 66708 151623 0 57 28886174 36864001 0 130560 0 3240990 99.990 150680 997 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 17:10:15] CVMFS is ok
[2025-10-12 17:10:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 17:10:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 17:10:15] Further information can be found at the LHC@home message board.
[2025-10-12 17:10:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 17:10:15] Checking for apptainer binary...
[2025-10-12 17:10:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 17:10:15] Running /usr/bin/apptainer --version
[2025-10-12 17:10:15] apptainer version 1.4.1-1.1
[2025-10-12 17:10:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 17:10:15] magicA244b
[2025-10-12 17:10:15] apptainer works
[2025-10-12 17:10:16] Set ATHENA_PROC_NUMBER=3
[2025-10-12 17:10:16] Set ATHENA_CORE_NUMBER=3
[2025-10-12 17:10:16] Starting ATLAS job with PandaID=6839164226
[2025-10-12 17:10:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 18:37:40]  *** The last 200 lines of the pilot log: ***
[2025-10-12 18:37:40] 2025-10-12 16:36:41,618 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 18:37:40] 2025-10-12 16:36:41,619 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:37:40] 2025-10-12 16:36:41,689 | INFO     | all payload control threads have been joined
[2025-10-12 18:37:40] 2025-10-12 16:36:41,728 | INFO     | all job control threads have been joined
[2025-10-12 18:37:40] 2025-10-12 16:36:41,802 | INFO     | all data control threads have been joined
[2025-10-12 18:37:40] 2025-10-12 16:36:42,010 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 18:37:40] 2025-10-12 16:36:42,011 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 18:37:40] 2025-10-12 16:36:42,011 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:37:40] 2025-10-12 16:36:42,011 | INFO     | will abort loop
[2025-10-12 18:37:40] 2025-10-12 16:36:42,624 | INFO     | [job] retrieve thread has finished
[2025-10-12 18:37:40] 2025-10-12 16:36:42,625 | INFO     | [job] queue monitor thread has finished
[2025-10-12 18:37:40] 2025-10-12 16:36:42,625 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 18:37:40] 2025-10-12 16:36:42,695 | INFO     | [payload] control thread has finished
[2025-10-12 18:37:40] 2025-10-12 16:36:42,734 | INFO     | [job] control thread has finished
[2025-10-12 18:37:40] 2025-10-12 16:36:42,750 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 18:37:40] 2025-10-12 16:36:42,793 | INFO     | [data] copytool_in thread has finished
[2025-10-12 18:37:40] 2025-10-12 16:36:42,808 | INFO     | [data] control thread has finished
[2025-10-12 18:37:40] 2025-10-12 16:36:42,839 | INFO     | [job] validate thread has finished
[2025-10-12 18:37:40] 2025-10-12 16:36:43,017 | INFO     | [job] job monitor thread has finished
[2025-10-12 18:37:40] 2025-10-12 16:36:43,194 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 18:37:40] 2025-10-12 16:36:43,271 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 18:37:40] 2025-10-12 16:36:43,788 | INFO     | [payload] validate_post thread has finished
[2025-10-12 18:37:40] 2025-10-12 16:36:44,142 | INFO     | [payload] failed_post thread has finished
[2025-10-12 18:37:40] 2025-10-12 16:36:44,631 | INFO     | [data] copytool_out thread has finished
[2025-10-12 18:37:40] 2025-10-12 16:36:44,692 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 18:37:40] 2025-10-12 16:36:48,699 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 18:37:40] 2025-10-12 16:36:52,123 | INFO     | job.realtimelogging is not enabled
[2025-10-12 18:37:40] 2025-10-12 16:36:53,129 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 18:37:40] 2025-10-12 16:37:33,684 | INFO     | [monitor] cgroup control has ended
[2025-10-12 18:37:40] 2025-10-12 16:37:35,076 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140219063797568)>', '<ExcThread(monitor, started 140218560653056)>']
[2025-10-12 18:37:40] 2025-10-12 16:37:35,892 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 18:37:40] 2025-10-12 16:37:35,892 | INFO     | [monitor] control thread has ended
[2025-10-12 18:37:40] 2025-10-12 16:37:40,081 | INFO     | all workflow threads have been joined
[2025-10-12 18:37:40] 2025-10-12 16:37:40,081 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 18:37:40] 2025-10-12 16:37:40,082 | INFO     | traces error code: 0
[2025-10-12 18:37:40] 2025-10-12 16:37:40,082 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 18:37:40] 2025-10-12 16:37:40,130 [wrapper] ==== pilot stdout END ====
[2025-10-12 18:37:40] 2025-10-12 16:37:40,133 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 18:37:40] 2025-10-12 16:37:40,136 [wrapper] pilotpid: 2723521
[2025-10-12 18:37:40] 2025-10-12 16:37:40,138 [wrapper] Pilot exit status: 0
[2025-10-12 18:37:40] 2025-10-12 16:37:40,146 [wrapper] pandaids: 6839164226
[2025-10-12 18:37:40] 2025-10-12 16:37:40,163 [wrapper] cleanup supervisor_pilot 2741985 2723522
[2025-10-12 18:37:40] 2025-10-12 16:37:40,166 [wrapper] Test setup, not cleaning
[2025-10-12 18:37:40] 2025-10-12 16:37:40,168 [wrapper] apfmon messages muted
[2025-10-12 18:37:40] 2025-10-12 16:37:40,171 [wrapper] ==== wrapper stdout END ====
[2025-10-12 18:37:40] 2025-10-12 16:37:40,173 [wrapper] ==== wrapper stderr END ====
[2025-10-12 18:37:40]  *** Error codes and diagnostics ***
[2025-10-12 18:37:40]     "exeErrorCode": 0,
[2025-10-12 18:37:40]     "exeErrorDiag": "",
[2025-10-12 18:37:40]     "pilotErrorCode": 0,
[2025-10-12 18:37:40]     "pilotErrorDiag": "",
[2025-10-12 18:37:40]  *** Listing of results directory ***
[2025-10-12 18:37:40] total 405612
[2025-10-12 18:37:40] -rw-r--r-- 1 boinc boinc    557409 Oct 12 02:05 pilot3.tar.gz
[2025-10-12 18:37:40] -rw-r--r-- 1 boinc boinc      5112 Oct 12 02:35 queuedata.json
[2025-10-12 18:37:40] -rwx------ 1 boinc boinc     36292 Oct 12 02:36 runpilot2-wrapper.sh
[2025-10-12 18:37:40] -rw-r--r-- 1 boinc boinc       100 Oct 12 17:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 18:37:40] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 17:10 run_atlas
[2025-10-12 18:37:40] -rw-r--r-- 1 boinc boinc       105 Oct 12 17:10 job.xml
[2025-10-12 18:37:40] -rw-r--r-- 2 boinc boinc 220589605 Oct 12 17:10 EVNT.46676267._003097.pool.root.1
[2025-10-12 18:37:40] -rw-r--r-- 2 boinc boinc    569679 Oct 12 17:10 input.tar.gz
[2025-10-12 18:37:40] -rw-r--r-- 2 boinc boinc     15120 Oct 12 17:10 start_atlas.sh
[2025-10-12 18:37:40] drwxrwx--x 2 boinc boinc      4096 Oct 12 17:10 shared
[2025-10-12 18:37:40] -rw-r--r-- 1 boinc boinc         0 Oct 12 17:10 boinc_setup_complete
[2025-10-12 18:37:40] -rw-r--r-- 1 boinc boinc      6200 Oct 12 17:10 init_data.xml
[2025-10-12 18:37:40] -rw-r--r-- 1 boinc boinc         0 Oct 12 17:10 boinc_lockfile
[2025-10-12 18:37:40] -rw-r--r-- 1 boinc boinc      2550 Oct 12 17:10 pandaJob.out
[2025-10-12 18:37:40] -rw------- 1 boinc boinc    975528 Oct 12 17:10 agis_schedconf.cvmfs.json
[2025-10-12 18:37:40] -rw------- 1 boinc boinc   1560580 Oct 12 17:10 agis_ddmendpoints.agis.ALL.json
[2025-10-12 18:37:40] drwx------ 5 boinc boinc      4096 Oct 12 17:10 pilot3
[2025-10-12 18:37:40] -rw------- 1 boinc boinc        95 Oct 12 18:35 pilot_heartbeat.json
[2025-10-12 18:37:40] -rw------- 1 boinc boinc 188837347 Oct 12 18:36 HITS.46676269._067815.pool.root.1
[2025-10-12 18:37:40] -rw-r--r-- 1 boinc boinc       530 Oct 12 18:36 boinc_task_state.xml
[2025-10-12 18:37:40] -rw------- 1 boinc boinc      1019 Oct 12 18:36 memory_monitor_summary.json
[2025-10-12 18:37:40] -rw------- 1 boinc boinc    262064 Oct 12 18:36 log.46676269._067815.job.log.tgz.1
[2025-10-12 18:37:40] -rw------- 1 boinc boinc      7762 Oct 12 18:36 heartbeat.json
[2025-10-12 18:37:40] -rw-r--r-- 1 boinc boinc      8192 Oct 12 18:37 boinc_mmap_file
[2025-10-12 18:37:40] -rw-r--r-- 1 boinc boinc        27 Oct 12 18:37 wrapper_checkpoint.txt
[2025-10-12 18:37:40] -rw------- 1 boinc boinc      4814 Oct 12 18:37 pilotlog.txt
[2025-10-12 18:37:40] -rw------- 1 boinc boinc    757078 Oct 12 18:37 log.46676269._067815.job.log.1
[2025-10-12 18:37:40] -rw------- 1 boinc boinc       357 Oct 12 18:37 output.list
[2025-10-12 18:37:40] -rw-r--r-- 1 boinc boinc       620 Oct 12 18:37 runtime_log
[2025-10-12 18:37:40] -rw------- 1 boinc boinc   1034240 Oct 12 18:37 result.tar.gz
[2025-10-12 18:37:40] -rw------- 1 boinc boinc       662 Oct 12 18:37 xhmMDmWFzR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmX5hNDmZ7q1fn.diag
[2025-10-12 18:37:40] -rw-r--r-- 1 boinc boinc      8797 Oct 12 18:37 runtime_log.err
[2025-10-12 18:37:40] -rw-r--r-- 1 boinc boinc      7081 Oct 12 18:37 stderr.txt
[2025-10-12 18:37:40] HITS file was successfully produced:
[2025-10-12 18:37:40] -rw------- 1 boinc boinc 188837347 Oct 12 18:36 shared/HITS.pool.root.1
[2025-10-12 18:37:40]  *** Contents of shared directory: ***
[2025-10-12 18:37:40] total 401428
[2025-10-12 18:37:40] -rw-r--r-- 2 boinc boinc 220589605 Oct 12 17:10 ATLAS.root_0
[2025-10-12 18:37:40] -rw-r--r-- 2 boinc boinc    569679 Oct 12 17:10 input.tar.gz
[2025-10-12 18:37:40] -rw-r--r-- 2 boinc boinc     15120 Oct 12 17:10 start_atlas.sh
[2025-10-12 18:37:40] -rw------- 1 boinc boinc 188837347 Oct 12 18:36 HITS.pool.root.1
[2025-10-12 18:37:40] -rw------- 1 boinc boinc   1034240 Oct 12 18:37 result.tar.gz
18:37:41 (2719790): run_atlas exited; CPU time 14832.595591
18:37:41 (2719790): called boinc_finish(0)

</stderr_txt>
]]>

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