Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:04:49 (3294771): wrapper (7.7.26015): starting
15:04:49 (3294771): wrapper: running run_atlas (--nthreads 6)
[2025-10-12 15:04:49] Arguments: --nthreads 6
[2025-10-12 15:04:49] Threads: 6
[2025-10-12 15:04:49] Checking for CVMFS
[2025-10-12 15:04:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 15:04:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 15:04:49] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 15:04:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 15:04:49] 2.11.5.0 3651556 3915 72884 151609 2 188 38641338 52428801 1858 130560 0 12120710 99.998 131267 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-12 15:04:49] CVMFS is ok
[2025-10-12 15:04:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 15:04:49] Checking for apptainer binary...
[2025-10-12 15:04:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 15:04:49] Running /usr/bin/apptainer --version
[2025-10-12 15:04:49] apptainer version 1.3.5-1.el9
[2025-10-12 15:04:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 15:04:49] testio008
[2025-10-12 15:04:49] apptainer works
[2025-10-12 15:04:50] Set ATHENA_PROC_NUMBER=6
[2025-10-12 15:04:50] Set ATHENA_CORE_NUMBER=6
[2025-10-12 15:04:50] Starting ATLAS job with PandaID=6839319279
[2025-10-12 15:04:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 16:18:11]  *** The last 200 lines of the pilot log: ***
[2025-10-12 16:18:11] 2025-10-12 07:17:03,737 | INFO     | time since job start (4326s) is within the limit (172800.0s)
[2025-10-12 16:18:11] 2025-10-12 07:17:04,026 | INFO     | monitor loop #346: job 0:6839319279 is in state 'finished'
[2025-10-12 16:18:11] 2025-10-12 07:17:04,027 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:18:11] 2025-10-12 07:17:05,742 | INFO     | time since job start (4328s) is within the limit (172800.0s)
[2025-10-12 16:18:11] 2025-10-12 07:17:06,528 | INFO     | monitor loop #347: job 0:6839319279 is in state 'finished'
[2025-10-12 16:18:11] 2025-10-12 07:17:06,529 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:18:11] 2025-10-12 07:17:07,747 | INFO     | time since job start (4330s) is within the limit (172800.0s)
[2025-10-12 16:18:11] 2025-10-12 07:17:09,031 | INFO     | monitor loop #348: job 0:6839319279 is in state 'finished'
[2025-10-12 16:18:11] 2025-10-12 07:17:09,032 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:18:11] 2025-10-12 07:17:09,747 | INFO     | time since job start (4332s) is within the limit (172800.0s)
[2025-10-12 16:18:11] 2025-10-12 07:17:11,533 | INFO     | monitor loop #349: job 0:6839319279 is in state 'finished'
[2025-10-12 16:18:11] 2025-10-12 07:17:11,533 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:18:11] 2025-10-12 07:17:11,752 | INFO     | time since job start (4334s) is within the limit (172800.0s)
[2025-10-12 16:18:11] 2025-10-12 07:17:13,757 | INFO     | time since job start (4336s) is within the limit (172800.0s)
[2025-10-12 16:18:11] 2025-10-12 07:17:14,036 | INFO     | monitor loop #350: job 0:6839319279 is in state 'finished'
[2025-10-12 16:18:11] 2025-10-12 07:17:14,036 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:18:11] 2025-10-12 07:17:15,762 | INFO     | time since job start (4338s) is within the limit (172800.0s)
[2025-10-12 16:18:11] 2025-10-12 07:17:16,538 | INFO     | monitor loop #351: job 0:6839319279 is in state 'finished'
[2025-10-12 16:18:11] 2025-10-12 07:17:16,539 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:18:11] 2025-10-12 07:17:17,767 | INFO     | time since job start (4340s) is within the limit (172800.0s)
[2025-10-12 16:18:11] 2025-10-12 07:17:19,041 | INFO     | monitor loop #352: job 0:6839319279 is in state 'finished'
[2025-10-12 16:18:11] 2025-10-12 07:17:19,042 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:18:11] 2025-10-12 07:17:19,773 | INFO     | time since job start (4342s) is within the limit (172800.0s)
[2025-10-12 16:18:11] 2025-10-12 07:17:21,543 | INFO     | monitor loop #353: job 0:6839319279 is in state 'finished'
[2025-10-12 16:18:11] 2025-10-12 07:17:21,544 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:18:11] 2025-10-12 07:17:21,778 | INFO     | time since job start (4344s) is within the limit (172800.0s)
[2025-10-12 16:18:11] 2025-10-12 07:17:22,824 | INFO     | PID=3298533 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 16:18:11] 2025-10-12 07:17:22,824 | INFO     | .. there are 3 such processes running
[2025-10-12 16:18:11] 2025-10-12 07:17:23,824 | INFO     | time since job start (4346s) is within the limit (172800.0s)
[2025-10-12 16:18:11] 2025-10-12 07:17:24,046 | INFO     | monitor loop #354: job 0:6839319279 is in state 'finished'
[2025-10-12 16:18:11] 2025-10-12 07:17:24,047 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:18:11] 2025-10-12 07:17:25,829 | INFO     | time since job start (4348s) is within the limit (172800.0s)
[2025-10-12 16:18:11] 2025-10-12 07:17:26,549 | INFO     | monitor loop #355: job 0:6839319279 is in state 'finished'
[2025-10-12 16:18:11] 2025-10-12 07:17:26,550 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:18:11] 2025-10-12 07:17:27,835 | INFO     | time since job start (4350s) is within the limit (172800.0s)
[2025-10-12 16:18:11] 2025-10-12 07:17:29,039 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 16:18:11] 2025-10-12 07:17:29,040 | INFO     | found 12 cores (12 cores per socket, 1 socket) , CPU MHz: 4099.8663
[2025-10-12 16:18:11] 2025-10-12 07:17:29,042 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6839319279/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 16:18:11] 2025-10-12 07:17:29,042 | INFO     | extracted standard info from prmon json
[2025-10-12 16:18:11] 2025-10-12 07:17:29,042 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 16:18:11] 2025-10-12 07:17:29,042 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 16:18:11] 2025-10-12 07:17:29,042 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 16:18:11] 2025-10-12 07:17:29,042 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 16:18:11] 2025-10-12 07:17:29,043 | INFO     | fitting pss+swap vs Time
[2025-10-12 16:18:11] 2025-10-12 07:17:29,043 | INFO     | sum of square deviations: 77515872.0
[2025-10-12 16:18:11] 2025-10-12 07:17:29,043 | INFO     | sum of deviations: -166369874.9999999
[2025-10-12 16:18:11] 2025-10-12 07:17:29,043 | INFO     | mean x: 1760251311.0
[2025-10-12 16:18:11] 2025-10-12 07:17:29,044 | INFO     | mean y: 2437275.9682539683
[2025-10-12 16:18:11] 2025-10-12 07:17:29,044 | INFO     | -- intersect: 3780409232.2104025
[2025-10-12 16:18:11] 2025-10-12 07:17:29,044 | INFO     | intersect: 3780409232.2104025
[2025-10-12 16:18:11] 2025-10-12 07:17:29,044 | INFO     | chi2: 0.023877374379366472
[2025-10-12 16:18:11] 2025-10-12 07:17:29,044 | INFO     | -- intersect: 3780409232.2104025
[2025-10-12 16:18:11] 2025-10-12 07:17:29,044 | INFO     | current memory leak: -2.15 B/s (using 63 data points, chi2=0.02)
[2025-10-12 16:18:11] 2025-10-12 07:17:29,044 | INFO     | could have reported an average CPU frequency of 3011 MHz (6 samples)
[2025-10-12 16:18:11] 2025-10-12 07:17:29,044 | INFO     | ..............................
[2025-10-12 16:18:11] 2025-10-12 07:17:29,044 | INFO     | . Timing measurements:
[2025-10-12 16:18:11] 2025-10-12 07:17:29,044 | INFO     | . get job = 0 s
[2025-10-12 16:18:11] 2025-10-12 07:17:29,044 | INFO     | . initial setup = 4 s
[2025-10-12 16:18:11] 2025-10-12 07:17:29,044 | INFO     | . payload setup = 2 s
[2025-10-12 16:18:11] 2025-10-12 07:17:29,044 | INFO     | . stage-in = 0 s
[2025-10-12 16:18:11] 2025-10-12 07:17:29,044 | INFO     | . payload execution = 4255 s
[2025-10-12 16:18:11] 2025-10-12 07:17:29,044 | INFO     | . stage-out = 0 s
[2025-10-12 16:18:11] 2025-10-12 07:17:29,044 | INFO     | . log creation = 0 s
[2025-10-12 16:18:11] 2025-10-12 07:17:29,044 | INFO     | ..............................
[2025-10-12 16:18:11] 2025-10-12 07:17:29,088 | INFO     | 
[2025-10-12 16:18:11] 2025-10-12 07:17:29,088 | INFO     | job summary report
[2025-10-12 16:18:11] 2025-10-12 07:17:29,088 | INFO     | --------------------------------------------------
[2025-10-12 16:18:11] 2025-10-12 07:17:29,088 | INFO     | PanDA job id: 6839319279
[2025-10-12 16:18:11] 2025-10-12 07:17:29,088 | INFO     | task id: 46676269
[2025-10-12 16:18:11] 2025-10-12 07:17:29,088 | INFO     | errors: (none)
[2025-10-12 16:18:11] 2025-10-12 07:17:29,088 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 16:18:11] 2025-10-12 07:17:29,088 | INFO     | pilot state: finished 
[2025-10-12 16:18:11] 2025-10-12 07:17:29,088 | INFO     | transexitcode: 0
[2025-10-12 16:18:11] 2025-10-12 07:17:29,088 | INFO     | exeerrorcode: 0
[2025-10-12 16:18:11] 2025-10-12 07:17:29,088 | INFO     | exeerrordiag: 
[2025-10-12 16:18:11] 2025-10-12 07:17:29,088 | INFO     | exitcode: 0
[2025-10-12 16:18:11] 2025-10-12 07:17:29,088 | INFO     | exitmsg: OK
[2025-10-12 16:18:11] 2025-10-12 07:17:29,088 | INFO     | cpuconsumptiontime: 22865 s
[2025-10-12 16:18:11] 2025-10-12 07:17:29,088 | INFO     | nevents: 400
[2025-10-12 16:18:11] 2025-10-12 07:17:29,088 | INFO     | neventsw: 0
[2025-10-12 16:18:11] 2025-10-12 07:17:29,088 | INFO     | pid: 3305244
[2025-10-12 16:18:11] 2025-10-12 07:17:29,089 | INFO     | pgrp: 3305244
[2025-10-12 16:18:11] 2025-10-12 07:17:29,089 | INFO     | corecount: 6
[2025-10-12 16:18:11] 2025-10-12 07:17:29,089 | INFO     | event service: False
[2025-10-12 16:18:11] 2025-10-12 07:17:29,089 | INFO     | sizes: {0: 2348856, 2: 2349118, 11: 2349146, 4262: 2384256, 4339: 2384394}
[2025-10-12 16:18:11] 2025-10-12 07:17:29,089 | INFO     | --------------------------------------------------
[2025-10-12 16:18:11] 2025-10-12 07:17:29,089 | INFO     | 
[2025-10-12 16:18:11] 2025-10-12 07:17:29,089 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-12 16:18:11] 2025-10-12 07:17:29,097 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 16:18:11] 2025-10-12 07:17:29,097 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 16:18:11] 2025-10-12 07:17:29,097 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 16:18:11] 2025-10-12 07:17:29,097 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 16:18:11] 2025-10-12 07:17:29,097 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 16:18:11] 2025-10-12 07:17:29,097 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 16:18:11] 2025-10-12 07:17:29,097 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 16:18:11] 2025-10-12 07:17:29,097 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 16:18:11] 2025-10-12 07:17:29,097 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 16:18:11] 2025-10-12 07:17:29,097 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 16:18:11] 2025-10-12 07:17:29,097 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 16:18:11] 2025-10-12 07:17:29,097 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 16:18:11] 2025-10-12 07:17:29,098 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 16:18:11] 2025-10-12 07:17:29,098 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 16:18:11] 2025-10-12 07:17:29,098 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 16:18:11] 2025-10-12 07:17:29,098 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 16:18:11] 2025-10-12 07:17:29,098 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 16:18:11] 2025-10-12 07:17:29,098 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 16:18:11] 2025-10-12 07:17:29,098 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 16:18:11] 2025-10-12 07:17:29,098 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 16:18:11] 2025-10-12 07:17:29,098 | INFO     | job 6839319279 has completed (purged errors)
[2025-10-12 16:18:11] 2025-10-12 07:17:29,098 | INFO     | overall cleanup function is called
[2025-10-12 16:18:11] 2025-10-12 07:17:30,103 | INFO     | --- collectZombieJob: --- 10, [3305244]
[2025-10-12 16:18:11] 2025-10-12 07:17:30,104 | INFO     | zombie collector waiting for pid 3305244
[2025-10-12 16:18:11] 2025-10-12 07:17:30,104 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 16:18:11] 2025-10-12 07:17:30,104 | INFO     | collected zombie processes
[2025-10-12 16:18:11] 2025-10-12 07:17:30,104 | INFO     | will attempt to kill all subprocesses of pid=3305244
[2025-10-12 16:18:11] 2025-10-12 07:17:30,153 | INFO     | process IDs to be killed: [3305244] (in reverse order)
[2025-10-12 16:18:11] 2025-10-12 07:17:30,173 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 16:18:11] 2025-10-12 07:17:30,173 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 16:18:11] 2025-10-12 07:17:30,175 | INFO     | did not find any defunct processes belonging to 3305244
[2025-10-12 16:18:11] 2025-10-12 07:17:30,176 | INFO     | did not find any defunct processes belonging to 3305244
[2025-10-12 16:18:11] 2025-10-12 07:17:30,176 | INFO     | ready for new job
[2025-10-12 16:18:11] 2025-10-12 07:17:30,176 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 16:18:11] 2025-10-12 07:17:30,177 | INFO     | ***************************************
[2025-10-12 16:18:11] 2025-10-12 07:17:30,177 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 16:18:11] 2025-10-12 07:17:30,177 | INFO     | ***************************************
[2025-10-12 16:18:11] 2025-10-12 07:17:30,177 | INFO     | 
[2025-10-12 16:18:11] 2025-10-12 07:17:30,178 | INFO     | architecture information:
[2025-10-12 16:18:11] 2025-10-12 07:17:30,178 | INFO     | executing command: cat /etc/os-release
[2025-10-12 16:18:11] 2025-10-12 07:17:30,184 | INFO     | cat /etc/os-release:
[2025-10-12 16:18:11] NAME="CentOS Linux"
[2025-10-12 16:18:11] VERSION="7 (Core)"
[2025-10-12 16:18:11] ID="centos"
[2025-10-12 16:18:11] ID_LIKE="rhel fedora"
[2025-10-12 16:18:11] VERSION_ID="7"
[2025-10-12 16:18:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 16:18:11] ANSI_COLOR="0;31"
[2025-10-12 16:18:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 16:18:11] HOME_URL="https://www.centos.org/"
[2025-10-12 16:18:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 16:18:11] 
[2025-10-12 16:18:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 16:18:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 16:18:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 16:18:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 16:18:11] 
[2025-10-12 16:18:11] 2025-10-12 07:17:30,184 | INFO     | ***************************************
[2025-10-12 16:18:11] 2025-10-12 07:17:30,687 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-12 16:18:11] 2025-10-12 07:17:30,695 | INFO     | sufficient remaining disk space (281272123392 B)
[2025-10-12 16:18:11] 2025-10-12 07:17:30,695 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 16:18:11] 2025-10-12 07:17:30,695 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 16:18:11] 2025-10-12 07:17:30,696 | INFO     | update_server=False
[2025-10-12 16:18:11] 2025-10-12 07:17:30,696 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 16:18:11] 2025-10-12 07:17:30,696 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:18:11] 2025-10-12 07:17:30,696 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:18:11] 2025-10-12 07:17:30,696 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 16:18:11] 2025-10-12 07:17:30,696 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 16:18:11] 2025-10-12 07:17:30,696 | INFO     | aborting loop
[2025-10-12 16:18:11] 2025-10-12 07:17:31,085 | INFO     | all data control threads have been joined
[2025-10-12 16:18:11] 2025-10-12 07:17:31,466 | INFO     | all payload control threads have been joined
[2025-10-12 16:18:11] 2025-10-12 07:17:31,700 | INFO     | [job] retrieve thread has finished
[2025-10-12 16:18:11] 2025-10-12 07:17:31,701 | INFO     | [job] queue monitor thread has finished
[2025-10-12 16:18:11] 2025-10-12 07:17:31,701 | INFO     | [job] job monitor thread has finished
[2025-10-12 16:18:11] 2025-10-12 07:17:31,711 | INFO     | all job control threads have been joined
[2025-10-12 16:18:11] 2025-10-12 07:17:32,086 | INFO     | [data] control thread has finished
[2025-10-12 16:18:11] 2025-10-12 07:17:32,471 | INFO     | [payload] control thread has finished
[2025-10-12 16:18:11] 2025-10-12 07:17:32,481 | INFO     | [job] validate thread has finished
[2025-10-12 16:18:11] 2025-10-12 07:17:32,495 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 16:18:11] 2025-10-12 07:17:32,532 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 16:18:11] 2025-10-12 07:17:32,571 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 16:18:11] 2025-10-12 07:17:32,700 | INFO     | [data] copytool_out thread has finished
[2025-10-12 16:18:11] 2025-10-12 07:17:32,716 | INFO     | [job] control thread has finished
[2025-10-12 16:18:11] 2025-10-12 07:17:32,903 | INFO     | [payload] failed_post thread has finished
[2025-10-12 16:18:11] 2025-10-12 07:17:33,059 | INFO     | [payload] validate_post thread has finished
[2025-10-12 16:18:11] 2025-10-12 07:17:33,187 | INFO     | [data] copytool_in thread has finished
[2025-10-12 16:18:11] 2025-10-12 07:17:34,700 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 16:18:11] 2025-10-12 07:17:41,182 | INFO     | job.realtimelogging is not enabled
[2025-10-12 16:18:11] 2025-10-12 07:17:42,187 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 16:18:11] 2025-10-12 07:18:00,939 | INFO     | PID=3298533 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 16:18:11] 2025-10-12 07:18:00,939 | INFO     | .. there are 3 such processes running
[2025-10-12 16:18:11] 2025-10-12 07:18:00,939 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 16:18:11] 2025-10-12 07:18:00,939 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 16:18:11] 2025-10-12 07:18:00,939 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 16:18:11] 2025-10-12 07:18:04,694 | INFO     | [monitor] cgroup control has ended
[2025-10-12 16:18:11] 2025-10-12 07:18:06,306 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139974494279488)>', '<ExcThread(monitor, started 139973923698432)>']
[2025-10-12 16:18:11] 2025-10-12 07:18:06,970 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 16:18:11] 2025-10-12 07:18:06,970 | INFO     | [monitor] control thread has ended
[2025-10-12 16:18:11] 2025-10-12 07:18:11,331 | INFO     | all workflow threads have been joined
[2025-10-12 16:18:11] 2025-10-12 07:18:11,332 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 16:18:11] 2025-10-12 07:18:11,332 | INFO     | traces error code: 0
[2025-10-12 16:18:11] 2025-10-12 07:18:11,332 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 16:18:11] 2025-10-12 07:18:11,402 [wrapper] ==== pilot stdout END ====
[2025-10-12 16:18:11] 2025-10-12 07:18:11,403 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 16:18:11] 2025-10-12 07:18:11,404 [wrapper] pilotpid: 3298533
[2025-10-12 16:18:11] 2025-10-12 07:18:11,405 [wrapper] Pilot exit status: 0
[2025-10-12 16:18:11] 2025-10-12 07:18:11,409 [wrapper] pandaids: 6839319279
[2025-10-12 16:18:11] 2025-10-12 07:18:11,422 [wrapper] cleanup supervisor_pilot 3343686 3298534
[2025-10-12 16:18:11] 2025-10-12 07:18:11,423 [wrapper] Test setup, not cleaning
[2025-10-12 16:18:11] 2025-10-12 07:18:11,425 [wrapper] apfmon messages muted
[2025-10-12 16:18:11] 2025-10-12 07:18:11,425 [wrapper] ==== wrapper stdout END ====
[2025-10-12 16:18:11] 2025-10-12 07:18:11,426 [wrapper] ==== wrapper stderr END ====
[2025-10-12 16:18:11]  *** Error codes and diagnostics ***
[2025-10-12 16:18:11]     "exeErrorCode": 0,
[2025-10-12 16:18:11]     "exeErrorDiag": "",
[2025-10-12 16:18:11]     "pilotErrorCode": 0,
[2025-10-12 16:18:11]     "pilotErrorDiag": "",
[2025-10-12 16:18:11]  *** Listing of results directory ***
[2025-10-12 16:18:11] total 409312
[2025-10-12 16:18:11] -rw-r--r--. 1 boinc boinc    557409 Oct 12 11:56 pilot3.tar.gz
[2025-10-12 16:18:11] -rw-r--r--. 1 boinc boinc      5112 Oct 12 12:08 queuedata.json
[2025-10-12 16:18:11] -rwx------. 1 boinc boinc     36292 Oct 12 12:09 runpilot2-wrapper.sh
[2025-10-12 16:18:11] -rw-r--r--. 1 boinc boinc       100 Oct 12 15:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 16:18:11] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 15:04 run_atlas
[2025-10-12 16:18:11] -rw-r--r--. 1 boinc boinc       105 Oct 12 15:04 job.xml
[2025-10-12 16:18:11] -rw-r--r--. 2 boinc boinc     15120 Oct 12 15:04 start_atlas.sh
[2025-10-12 16:18:11] drwxrwx--x. 2 boinc boinc        68 Oct 12 15:04 shared
[2025-10-12 16:18:11] -rw-r--r--. 2 boinc boinc    569678 Oct 12 15:04 input.tar.gz
[2025-10-12 16:18:11] -rw-r--r--. 1 boinc boinc      9509 Oct 12 15:04 init_data.xml
[2025-10-12 16:18:11] -rw-r--r--. 2 boinc boinc 221126703 Oct 12 15:04 EVNT.46676267._003211.pool.root.1
[2025-10-12 16:18:11] -rw-r--r--. 1 boinc boinc         0 Oct 12 15:04 boinc_lockfile
[2025-10-12 16:18:11] -rw-r--r--. 1 boinc boinc      2549 Oct 12 15:04 pandaJob.out
[2025-10-12 16:18:11] -rw-------. 1 boinc boinc    975528 Oct 12 15:04 agis_schedconf.cvmfs.json
[2025-10-12 16:18:11] -rw-------. 1 boinc boinc   1560580 Oct 12 15:04 agis_ddmendpoints.agis.ALL.json
[2025-10-12 16:18:11] drwx------. 5 boinc boinc      4096 Oct 12 15:04 pilot3
[2025-10-12 16:18:11] -rw-------. 1 boinc boinc 192188103 Oct 12 16:15 HITS.46676269._069981.pool.root.1
[2025-10-12 16:18:11] -rw-r--r--. 1 boinc boinc       529 Oct 12 16:15 boinc_task_state.xml
[2025-10-12 16:18:11] -rw-------. 1 boinc boinc      1023 Oct 12 16:16 memory_monitor_summary.json
[2025-10-12 16:18:11] -rw-------. 1 boinc boinc    304154 Oct 12 16:16 log.46676269._069981.job.log.tgz.1
[2025-10-12 16:18:11] -rw-------. 1 boinc boinc        95 Oct 12 16:17 pilot_heartbeat.json
[2025-10-12 16:18:11] -rw-------. 1 boinc boinc      7766 Oct 12 16:17 heartbeat.json
[2025-10-12 16:18:11] -rw-r--r--. 1 boinc boinc        27 Oct 12 16:17 wrapper_checkpoint.txt
[2025-10-12 16:18:11] -rw-r--r--. 1 boinc boinc      8192 Oct 12 16:17 boinc_mmap_file
[2025-10-12 16:18:11] -rw-------. 1 boinc boinc      4896 Oct 12 16:18 pilotlog.txt
[2025-10-12 16:18:11] -rw-------. 1 boinc boinc    657792 Oct 12 16:18 log.46676269._069981.job.log.1
[2025-10-12 16:18:11] -rw-------. 1 boinc boinc       357 Oct 12 16:18 output.list
[2025-10-12 16:18:11] -rw-r--r--. 1 boinc boinc       620 Oct 12 16:18 runtime_log
[2025-10-12 16:18:11] -rw-------. 1 boinc boinc    983040 Oct 12 16:18 result.tar.gz
[2025-10-12 16:18:11] -rw-r--r--. 1 boinc boinc      8661 Oct 12 16:18 runtime_log.err
[2025-10-12 16:18:11] -rw-------. 1 boinc boinc       642 Oct 12 16:18 nDANDmGe1R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmPSiNDmebZrHo.diag
[2025-10-12 16:18:11] -rw-r--r--. 1 boinc boinc     21907 Oct 12 16:18 stderr.txt
[2025-10-12 16:18:11] HITS file was successfully produced:
[2025-10-12 16:18:11] -rw-------. 1 boinc boinc 192188103 Oct 12 16:15 shared/HITS.pool.root.1
[2025-10-12 16:18:11]  *** Contents of shared directory: ***
[2025-10-12 16:18:11] total 405168
[2025-10-12 16:18:11] -rw-r--r--. 2 boinc boinc     15120 Oct 12 15:04 start_atlas.sh
[2025-10-12 16:18:11] -rw-r--r--. 2 boinc boinc    569678 Oct 12 15:04 input.tar.gz
[2025-10-12 16:18:11] -rw-r--r--. 2 boinc boinc 221126703 Oct 12 15:04 ATLAS.root_0
[2025-10-12 16:18:11] -rw-------. 1 boinc boinc 192188103 Oct 12 16:15 HITS.pool.root.1
[2025-10-12 16:18:11] -rw-------. 1 boinc boinc    983040 Oct 12 16:18 result.tar.gz
16:18:12 (3294771): run_atlas exited; CPU time 22891.447648
16:18:12 (3294771): called boinc_finish(0)

</stderr_txt>
]]>

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