Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:00:40 (2118023): wrapper (7.7.26015): starting
03:00:40 (2118023): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 03:00:40] Arguments: --nthreads 8
[2025-10-12 03:00:40] Threads: 8
[2025-10-12 03:00:40] Checking for CVMFS
[2025-10-12 03:00:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 03:00:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 03:00:41] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 03:00:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 03:00:42] 2.13.2.0 128560 115648 199840 151611 2 274 29118563 39288833 7545 16776704 1 72112399 99.563 80421589 35348 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 03:00:42] CVMFS is ok
[2025-10-12 03:00:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 03:00:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 03:00:42] Further information can be found at the LHC@home message board.
[2025-10-12 03:00:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 03:00:42] Checking for apptainer binary...
[2025-10-12 03:00:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 03:00:42] Running /usr/bin/apptainer --version
[2025-10-12 03:00:42] apptainer version 1.4.3-1.el9
[2025-10-12 03:00:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 03:00:43] c-211-5.aglt2.org
[2025-10-12 03:00:43] apptainer works
[2025-10-12 03:00:43] Set ATHENA_PROC_NUMBER=8
[2025-10-12 03:00:43] Set ATHENA_CORE_NUMBER=8
[2025-10-12 03:00:43] Starting ATLAS job with PandaID=6839163282
[2025-10-12 03:00:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:40:04 (2118023): BOINC client no longer exists - exiting
05:40:04 (2118023): timer handler: client dead, exiting
05:46:26 (2365639): wrapper (7.7.26015): starting
05:46:26 (2365639): wrapper: running run_atlas (--nthreads 9)
[2025-10-12 05:46:26] Arguments: --nthreads 9
[2025-10-12 05:46:26] Threads: 9
[2025-10-12 05:46:26] This job has been restarted, cleaning up previous attempt
[2025-10-12 05:46:26] Checking for CVMFS
[2025-10-12 05:46:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 05:46:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 05:46:27] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 05:46:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 05:46:27] 2.13.2.0 128560 115814 193296 151615 1 141 29288134 39288833 6341 16776704 1 72306817 99.564 80426984 35347 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 05:46:27] CVMFS is ok
[2025-10-12 05:46:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 05:46:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 05:46:27] Further information can be found at the LHC@home message board.
[2025-10-12 05:46:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 05:46:27] Checking for apptainer binary...
[2025-10-12 05:46:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 05:46:27] Running /usr/bin/apptainer --version
[2025-10-12 05:46:27] apptainer version 1.4.3-1.el9
[2025-10-12 05:46:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 05:46:27] c-211-5.aglt2.org
[2025-10-12 05:46:27] apptainer works
[2025-10-12 05:46:27] Set ATHENA_PROC_NUMBER=9
[2025-10-12 05:46:27] Set ATHENA_CORE_NUMBER=9
[2025-10-12 05:46:27] Starting ATLAS job with PandaID=6839163282
[2025-10-12 05:46:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 08:18:01]  *** The last 200 lines of the pilot log: ***
[2025-10-12 08:18:01] 2025-10-12 12:17:24,506 | INFO     | PID=2372965 has CPU usage=11.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-12 08:18:01] 2025-10-12 12:17:24,506 | INFO     | .. there are 6 such processes running
[2025-10-12 08:18:01] 2025-10-12 12:17:25,232 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 08:18:01] 2025-10-12 12:17:25,236 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1887750000005
[2025-10-12 08:18:01] 2025-10-12 12:17:25,240 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6839163282/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 08:18:01] 2025-10-12 12:17:25,241 | INFO     | extracted standard info from prmon json
[2025-10-12 08:18:01] 2025-10-12 12:17:25,241 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 08:18:01] 2025-10-12 12:17:25,241 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 08:18:01] 2025-10-12 12:17:25,241 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 08:18:01] 2025-10-12 12:17:25,241 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 08:18:01] 2025-10-12 12:17:25,243 | INFO     | fitting pss+swap vs Time
[2025-10-12 08:18:01] 2025-10-12 12:17:25,243 | INFO     | sum of square deviations: 1005157953.2702714
[2025-10-12 08:18:01] 2025-10-12 12:17:25,244 | INFO     | sum of deviations: 18899078519.581085
[2025-10-12 08:18:01] 2025-10-12 12:17:25,244 | INFO     | mean x: 1760266910.608108
[2025-10-12 08:18:01] 2025-10-12 12:17:25,244 | INFO     | mean y: 2545799.1824324327
[2025-10-12 08:18:01] 2025-10-12 12:17:25,244 | INFO     | -- intersect: -33094165469.69608
[2025-10-12 08:18:01] 2025-10-12 12:17:25,244 | INFO     | intersect: -33094165469.69608
[2025-10-12 08:18:01] 2025-10-12 12:17:25,245 | INFO     | chi2: 1.5207101006853714
[2025-10-12 08:18:01] 2025-10-12 12:17:25,245 | INFO     | sum of square deviations: 906686568.2097896
[2025-10-12 08:18:01] 2025-10-12 12:17:25,245 | INFO     | sum of deviations: 18168617952.5035
[2025-10-12 08:18:01] 2025-10-12 12:17:25,245 | INFO     | mean x: 1760266758.1118882
[2025-10-12 08:18:01] 2025-10-12 12:17:25,245 | INFO     | mean y: 2544666.4685314684
[2025-10-12 08:18:01] 2025-10-12 12:17:25,245 | INFO     | -- intersect: -35270520297.72632
[2025-10-12 08:18:01] 2025-10-12 12:17:25,245 | INFO     | intersect: -35270520297.72632
[2025-10-12 08:18:01] 2025-10-12 12:17:25,246 | INFO     | chi2: 1.5226065653292413
[2025-10-12 08:18:01] 2025-10-12 12:17:25,246 | INFO     | current chi2=1.5226065653292413 (change=-0.12470915021970481 %)
[2025-10-12 08:18:01] 2025-10-12 12:17:25,246 | INFO     | right removable region: 142
[2025-10-12 08:18:01] 2025-10-12 12:17:25,246 | INFO     | sum of square deviations: 906676808.2097896
[2025-10-12 08:18:01] 2025-10-12 12:17:25,246 | INFO     | sum of deviations: -4818191087.013989
[2025-10-12 08:18:01] 2025-10-12 12:17:25,246 | INFO     | mean x: 1760267063.1118882
[2025-10-12 08:18:01] 2025-10-12 12:17:25,247 | INFO     | mean y: 2581991.125874126
[2025-10-12 08:18:01] 2025-10-12 12:17:25,247 | INFO     | -- intersect: 9356855749.375088
[2025-10-12 08:18:01] 2025-10-12 12:17:25,247 | INFO     | intersect: 9356855749.375088
[2025-10-12 08:18:01] 2025-10-12 12:17:25,247 | INFO     | chi2: 0.03268103913902503
[2025-10-12 08:18:01] 2025-10-12 12:17:25,247 | INFO     | current chi2=0.03268103913902503 (change=97.85093561722934 %)
[2025-10-12 08:18:01] 2025-10-12 12:17:25,247 | INFO     | sum of square deviations: 814864395.0797083
[2025-10-12 08:18:01] 2025-10-12 12:17:25,247 | INFO     | sum of deviations: -2442431159.7971034
[2025-10-12 08:18:01] 2025-10-12 12:17:25,248 | INFO     | mean x: 1760267215.6014493
[2025-10-12 08:18:01] 2025-10-12 12:17:25,248 | INFO     | mean y: 2578034.9855072466
[2025-10-12 08:18:01] 2025-10-12 12:17:25,248 | INFO     | -- intersect: 5278709281.993439
[2025-10-12 08:18:01] 2025-10-12 12:17:25,248 | INFO     | intersect: 5278709281.993439
[2025-10-12 08:18:01] 2025-10-12 12:17:25,248 | INFO     | chi2: 0.026356357939273427
[2025-10-12 08:18:01] 2025-10-12 12:17:25,248 | INFO     | current chi2=0.026356357939273427 (change=19.35275427701803 %)
[2025-10-12 08:18:01] 2025-10-12 12:17:25,248 | INFO     | left removable region: 20
[2025-10-12 08:18:01] 2025-10-12 12:17:25,248 | INFO     | sum of square deviations: 563008814.8934413
[2025-10-12 08:18:01] 2025-10-12 12:17:25,249 | INFO     | sum of deviations: 1437131419.2377045
[2025-10-12 08:18:01] 2025-10-12 12:17:25,249 | INFO     | mean x: 1760267337.6147542
[2025-10-12 08:18:01] 2025-10-12 12:17:25,249 | INFO     | mean y: 2570340.0901639345
[2025-10-12 08:18:01] 2025-10-12 12:17:25,249 | INFO     | -- intersect: -4490672803.221653
[2025-10-12 08:18:01] 2025-10-12 12:17:25,249 | INFO     | intersect: -4490672803.221653
[2025-10-12 08:18:01] 2025-10-12 12:17:25,249 | INFO     | chi2: 0.0003861962795507308
[2025-10-12 08:18:01] 2025-10-12 12:17:25,249 | INFO     | -- intersect: -4490672803.221653
[2025-10-12 08:18:01] 2025-10-12 12:17:25,250 | INFO     | current memory leak: 2.55 B/s (using 122 data points, chi2=0.00)
[2025-10-12 08:18:01] 2025-10-12 12:17:25,250 | INFO     | could have reported an average CPU frequency of 2600 MHz (8 samples)
[2025-10-12 08:18:01] 2025-10-12 12:17:25,250 | INFO     | ..............................
[2025-10-12 08:18:01] 2025-10-12 12:17:25,250 | INFO     | . Timing measurements:
[2025-10-12 08:18:01] 2025-10-12 12:17:25,250 | INFO     | . get job = 0 s
[2025-10-12 08:18:01] 2025-10-12 12:17:25,250 | INFO     | . initial setup = 1 s
[2025-10-12 08:18:01] 2025-10-12 12:17:25,250 | INFO     | . payload setup = 6 s
[2025-10-12 08:18:01] 2025-10-12 12:17:25,251 | INFO     | . stage-in = 0 s
[2025-10-12 08:18:01] 2025-10-12 12:17:25,251 | INFO     | . payload execution = 9008 s
[2025-10-12 08:18:01] 2025-10-12 12:17:25,251 | INFO     | . stage-out = 2 s
[2025-10-12 08:18:01] 2025-10-12 12:17:25,251 | INFO     | . log creation = 0 s
[2025-10-12 08:18:01] 2025-10-12 12:17:25,251 | INFO     | ..............................
[2025-10-12 08:18:01] 2025-10-12 12:17:25,507 | INFO     | time since job start (9046s) is within the limit (172800.0s)
[2025-10-12 08:18:01] 2025-10-12 12:17:25,799 | INFO     | 
[2025-10-12 08:18:01] 2025-10-12 12:17:25,799 | INFO     | job summary report
[2025-10-12 08:18:01] 2025-10-12 12:17:25,799 | INFO     | --------------------------------------------------
[2025-10-12 08:18:01] 2025-10-12 12:17:25,799 | INFO     | PanDA job id: 6839163282
[2025-10-12 08:18:01] 2025-10-12 12:17:25,800 | INFO     | task id: 46676269
[2025-10-12 08:18:01] 2025-10-12 12:17:25,800 | INFO     | errors: (none)
[2025-10-12 08:18:01] 2025-10-12 12:17:25,800 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 08:18:01] 2025-10-12 12:17:25,800 | INFO     | pilot state: finished 
[2025-10-12 08:18:01] 2025-10-12 12:17:25,800 | INFO     | transexitcode: 0
[2025-10-12 08:18:01] 2025-10-12 12:17:25,800 | INFO     | exeerrorcode: 0
[2025-10-12 08:18:01] 2025-10-12 12:17:25,800 | INFO     | exeerrordiag: 
[2025-10-12 08:18:01] 2025-10-12 12:17:25,800 | INFO     | exitcode: 0
[2025-10-12 08:18:01] 2025-10-12 12:17:25,800 | INFO     | exitmsg: OK
[2025-10-12 08:18:01] 2025-10-12 12:17:25,800 | INFO     | cpuconsumptiontime: 51156 s
[2025-10-12 08:18:01] 2025-10-12 12:17:25,800 | INFO     | nevents: 400
[2025-10-12 08:18:01] 2025-10-12 12:17:25,801 | INFO     | neventsw: 0
[2025-10-12 08:18:01] 2025-10-12 12:17:25,801 | INFO     | pid: 2385479
[2025-10-12 08:18:01] 2025-10-12 12:17:25,801 | INFO     | pgrp: 2385479
[2025-10-12 08:18:01] 2025-10-12 12:17:25,801 | INFO     | corecount: 9
[2025-10-12 08:18:01] 2025-10-12 12:17:25,801 | INFO     | event service: False
[2025-10-12 08:18:01] 2025-10-12 12:17:25,801 | INFO     | sizes: {0: 2348857, 1: 2348857, 5: 2349147, 11: 2349203, 9018: 2377490, 9020: 2386488, 9023: 2386672, 9030: 2386866}
[2025-10-12 08:18:01] 2025-10-12 12:17:25,801 | INFO     | --------------------------------------------------
[2025-10-12 08:18:01] 2025-10-12 12:17:25,801 | INFO     | 
[2025-10-12 08:18:01] 2025-10-12 12:17:25,801 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 08:18:01] 2025-10-12 12:17:25,823 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 08:18:01] 2025-10-12 12:17:25,824 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 08:18:01] 2025-10-12 12:17:25,824 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 08:18:01] 2025-10-12 12:17:25,824 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 08:18:01] 2025-10-12 12:17:25,824 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 08:18:01] 2025-10-12 12:17:25,824 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 08:18:01] 2025-10-12 12:17:25,825 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 08:18:01] 2025-10-12 12:17:25,825 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 08:18:01] 2025-10-12 12:17:25,825 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 08:18:01] 2025-10-12 12:17:25,825 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 08:18:01] 2025-10-12 12:17:25,825 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 08:18:01] 2025-10-12 12:17:25,825 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 08:18:01] 2025-10-12 12:17:25,825 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 08:18:01] 2025-10-12 12:17:25,825 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 08:18:01] 2025-10-12 12:17:25,825 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 08:18:01] 2025-10-12 12:17:25,826 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 08:18:01] 2025-10-12 12:17:25,826 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 08:18:01] 2025-10-12 12:17:25,826 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 08:18:01] 2025-10-12 12:17:25,826 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 08:18:01] 2025-10-12 12:17:25,826 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 08:18:01] 2025-10-12 12:17:25,826 | INFO     | job 6839163282 has completed (purged errors)
[2025-10-12 08:18:01] 2025-10-12 12:17:25,826 | INFO     | overall cleanup function is called
[2025-10-12 08:18:01] 2025-10-12 12:17:26,836 | INFO     | --- collectZombieJob: --- 10, [2385479]
[2025-10-12 08:18:01] 2025-10-12 12:17:26,836 | INFO     | zombie collector waiting for pid 2385479
[2025-10-12 08:18:01] 2025-10-12 12:17:26,836 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 08:18:01] 2025-10-12 12:17:26,836 | INFO     | collected zombie processes
[2025-10-12 08:18:01] 2025-10-12 12:17:26,836 | INFO     | will attempt to kill all subprocesses of pid=2385479
[2025-10-12 08:18:01] 2025-10-12 12:17:27,076 | INFO     | process IDs to be killed: [2385479] (in reverse order)
[2025-10-12 08:18:01] 2025-10-12 12:17:27,153 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 08:18:01] 2025-10-12 12:17:27,153 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 08:18:01] 2025-10-12 12:17:27,158 | INFO     | did not find any defunct processes belonging to 2385479
[2025-10-12 08:18:01] 2025-10-12 12:17:27,163 | INFO     | did not find any defunct processes belonging to 2385479
[2025-10-12 08:18:01] 2025-10-12 12:17:27,164 | INFO     | ready for new job
[2025-10-12 08:18:01] 2025-10-12 12:17:27,164 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 08:18:01] 2025-10-12 12:17:27,166 | INFO     | ***************************************
[2025-10-12 08:18:01] 2025-10-12 12:17:27,166 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 08:18:01] 2025-10-12 12:17:27,166 | INFO     | ***************************************
[2025-10-12 08:18:01] 2025-10-12 12:17:27,166 | INFO     | 
[2025-10-12 08:18:01] 2025-10-12 12:17:27,168 | INFO     | architecture information:
[2025-10-12 08:18:01] 2025-10-12 12:17:27,168 | INFO     | executing command: cat /etc/os-release
[2025-10-12 08:18:01] 2025-10-12 12:17:27,184 | INFO     | cat /etc/os-release:
[2025-10-12 08:18:01] NAME="CentOS Linux"
[2025-10-12 08:18:01] VERSION="7 (Core)"
[2025-10-12 08:18:01] ID="centos"
[2025-10-12 08:18:01] ID_LIKE="rhel fedora"
[2025-10-12 08:18:01] VERSION_ID="7"
[2025-10-12 08:18:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 08:18:01] ANSI_COLOR="0;31"
[2025-10-12 08:18:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 08:18:01] HOME_URL="https://www.centos.org/"
[2025-10-12 08:18:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 08:18:01] 
[2025-10-12 08:18:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 08:18:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 08:18:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 08:18:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 08:18:01] 
[2025-10-12 08:18:01] 2025-10-12 12:17:27,184 | INFO     | ***************************************
[2025-10-12 08:18:01] 2025-10-12 12:17:27,687 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 08:18:01] 2025-10-12 12:17:27,703 | INFO     | sufficient remaining disk space (52425654272 B)
[2025-10-12 08:18:01] 2025-10-12 12:17:27,703 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 08:18:01] 2025-10-12 12:17:27,703 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 08:18:01] 2025-10-12 12:17:27,704 | INFO     | update_server=False
[2025-10-12 08:18:01] 2025-10-12 12:17:27,704 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 08:18:01] 2025-10-12 12:17:27,932 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 08:18:01] 2025-10-12 12:17:27,932 | INFO     | aborting loop
[2025-10-12 08:18:01] 2025-10-12 12:17:27,966 | INFO     | all payload control threads have been joined
[2025-10-12 08:18:01] 2025-10-12 12:17:28,356 | INFO     | all data control threads have been joined
[2025-10-12 08:18:01] 2025-10-12 12:17:28,638 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 08:18:01] 2025-10-12 12:17:28,708 | INFO     | [job] retrieve thread has finished
[2025-10-12 08:18:01] 2025-10-12 12:17:28,845 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 08:18:01] 2025-10-12 12:17:28,854 | INFO     | [payload] validate_post thread has finished
[2025-10-12 08:18:01] 2025-10-12 12:17:28,938 | INFO     | [job] job monitor thread has finished
[2025-10-12 08:18:01] 2025-10-12 12:17:28,971 | INFO     | [payload] control thread has finished
[2025-10-12 08:18:01] 2025-10-12 12:17:29,187 | INFO     | all job control threads have been joined
[2025-10-12 08:18:01] 2025-10-12 12:17:29,306 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 08:18:01] 2025-10-12 12:17:29,360 | INFO     | [data] control thread has finished
[2025-10-12 08:18:01] 2025-10-12 12:17:29,415 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 08:18:01] 2025-10-12 12:17:29,517 | INFO     | [payload] failed_post thread has finished
[2025-10-12 08:18:01] 2025-10-12 12:17:29,570 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 08:18:01] 2025-10-12 12:17:29,754 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 08:18:01] 2025-10-12 12:17:29,923 | INFO     | [job] validate thread has finished
[2025-10-12 08:18:01] 2025-10-12 12:17:29,987 | INFO     | [data] copytool_in thread has finished
[2025-10-12 08:18:01] 2025-10-12 12:17:30,192 | INFO     | [job] control thread has finished
[2025-10-12 08:18:01] 2025-10-12 12:17:30,321 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 08:18:01] 2025-10-12 12:17:30,644 | INFO     | [data] copytool_out thread has finished
[2025-10-12 08:18:01] 2025-10-12 12:17:31,327 | INFO     | [job] queue monitor thread has finished
[2025-10-12 08:18:01] 2025-10-12 12:17:32,851 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 08:18:01] 2025-10-12 12:17:54,135 | INFO     | [monitor] cgroup control has ended
[2025-10-12 08:18:01] 2025-10-12 12:17:55,916 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140652119717696)>', '<ExcThread(monitor, started 140651622545152)>']
[2025-10-12 08:18:01] 2025-10-12 12:17:58,818 | INFO     | PID=2372965 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 08:18:01] 2025-10-12 12:17:58,818 | INFO     | .. there are 7 such processes running
[2025-10-12 08:18:01] 2025-10-12 12:17:58,819 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 08:18:01] 2025-10-12 12:17:58,819 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 08:18:01] 2025-10-12 12:17:58,819 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 08:18:01] 2025-10-12 12:17:58,819 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 08:18:01] 2025-10-12 12:17:58,819 | INFO     | [monitor] control thread has ended
[2025-10-12 08:18:01] 2025-10-12 12:18:00,920 | INFO     | all workflow threads have been joined
[2025-10-12 08:18:01] 2025-10-12 12:18:00,921 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 08:18:01] 2025-10-12 12:18:00,921 | INFO     | traces error code: 0
[2025-10-12 08:18:01] 2025-10-12 12:18:00,921 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 08:18:01] 2025-10-12 12:18:01,080 [wrapper] ==== pilot stdout END ====
[2025-10-12 08:18:01] 2025-10-12 12:18:01,083 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 08:18:01] 2025-10-12 12:18:01,086 [wrapper] pilotpid: 2372965
[2025-10-12 08:18:01] 2025-10-12 12:18:01,089 [wrapper] Pilot exit status: 0
[2025-10-12 08:18:01] 2025-10-12 12:18:01,101 [wrapper] pandaids: 6839163282 6839163282
[2025-10-12 08:18:01] 2025-10-12 12:18:01,144 [wrapper] cleanup supervisor_pilot 2598198 2372968
[2025-10-12 08:18:01] 2025-10-12 12:18:01,148 [wrapper] Test setup, not cleaning
[2025-10-12 08:18:01] 2025-10-12 12:18:01,151 [wrapper] apfmon messages muted
[2025-10-12 08:18:01] 2025-10-12 12:18:01,155 [wrapper] ==== wrapper stdout END ====
[2025-10-12 08:18:01] 2025-10-12 12:18:01,158 [wrapper] ==== wrapper stderr END ====
[2025-10-12 08:18:01]  *** Error codes and diagnostics ***
[2025-10-12 08:18:01]     "exeErrorCode": 0,
[2025-10-12 08:18:01]     "exeErrorDiag": "",
[2025-10-12 08:18:01]     "pilotErrorCode": 0,
[2025-10-12 08:18:01]     "pilotErrorDiag": "",
[2025-10-12 08:18:01]  *** Listing of results directory ***
[2025-10-12 08:18:01] total 625112
[2025-10-12 08:18:01] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-12 08:18:01] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 20:05 pilot3.tar.gz
[2025-10-12 08:18:01] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 20:13 queuedata.json
[2025-10-12 08:18:01] -rwx------. 1 boincer umatlas     36292 Oct 11 20:14 runpilot2-wrapper.sh
[2025-10-12 08:18:01] -rw-r--r--. 1 boincer umatlas       100 Oct 12 03:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 08:18:01] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 03:00 run_atlas
[2025-10-12 08:18:01] -rw-r--r--. 1 boincer umatlas       105 Oct 12 03:00 job.xml
[2025-10-12 08:18:01] -rw-r--r--. 3 boincer umatlas 219801294 Oct 12 03:00 EVNT.46676267._002750.pool.root.1
[2025-10-12 08:18:01] -rw-r--r--. 3 boincer umatlas 219801294 Oct 12 03:00 ATLAS.root_0
[2025-10-12 08:18:01] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 03:00 start_atlas.sh
[2025-10-12 08:18:01] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 03:00 shared
[2025-10-12 08:18:01] -rw-r--r--. 2 boincer umatlas    569678 Oct 12 03:00 input.tar.gz
[2025-10-12 08:18:01] -rw-r--r--. 1 boincer umatlas         0 Oct 12 03:00 boinc_lockfile
[2025-10-12 08:18:01] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 05:46 pandaJob.out
[2025-10-12 08:18:01] -rw-------. 1 boincer umatlas    975536 Oct 12 05:46 agis_schedconf.cvmfs.json
[2025-10-12 08:18:01] -rw-r--r--. 1 boincer umatlas      6659 Oct 12 08:09 init_data.xml
[2025-10-12 08:18:01] -rw-------. 1 boincer umatlas 193260719 Oct 12 08:16 HITS.46676269._067446.pool.root.1
[2025-10-12 08:18:01] -rw-r--r--. 1 boincer umatlas       531 Oct 12 08:16 boinc_task_state.xml
[2025-10-12 08:18:01] -rw-------. 1 boincer umatlas        96 Oct 12 08:16 pilot_heartbeat.json
[2025-10-12 08:18:01] -rw-------. 1 boincer umatlas      1050 Oct 12 08:17 memory_monitor_summary.json
[2025-10-12 08:18:01] -rw-------. 1 boincer umatlas   1560580 Oct 12 08:17 agis_ddmendpoints.agis.ALL.json
[2025-10-12 08:18:01] -rw-------. 1 boincer umatlas    418418 Oct 12 08:17 log.46676269._067446.job.log.tgz.1
[2025-10-12 08:18:01] -rw-------. 1 boincer umatlas      7807 Oct 12 08:17 heartbeat.json
[2025-10-12 08:18:01] -rw-r--r--. 1 boincer umatlas        28 Oct 12 08:17 wrapper_checkpoint.txt
[2025-10-12 08:18:01] -rw-------. 1 boincer umatlas      4823 Oct 12 08:18 pilotlog.txt
[2025-10-12 08:18:01] -rw-------. 1 boincer umatlas   1255944 Oct 12 08:18 log.46676269._067446.job.log.1
[2025-10-12 08:18:01] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 08:18 boinc_mmap_file
[2025-10-12 08:18:01] -rw-------. 1 boincer umatlas       357 Oct 12 08:18 output.list
[2025-10-12 08:18:01] -rw-r--r--. 1 boincer umatlas       620 Oct 12 08:18 runtime_log
[2025-10-12 08:18:01] -rw-------. 1 boincer umatlas   1689600 Oct 12 08:18 result.tar.gz
[2025-10-12 08:18:01] -rw-r--r--. 1 boincer umatlas      8783 Oct 12 08:18 runtime_log.err
[2025-10-12 08:18:01] -rw-------. 1 boincer umatlas       777 Oct 12 08:18 GbgKDmauyR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm41hNDmY9NxEo.diag
[2025-10-12 08:18:01] -rw-r--r--. 1 boincer umatlas     23552 Oct 12 08:18 stderr.txt
[2025-10-12 08:18:01] HITS file was successfully produced:
[2025-10-12 08:18:01] -rw-------. 1 boincer umatlas 193260719 Oct 12 08:16 shared/HITS.pool.root.1
[2025-10-12 08:18:01]  *** Contents of shared directory: ***
[2025-10-12 08:18:01] total 405616
[2025-10-12 08:18:01] -rw-r--r--. 3 boincer umatlas 219801294 Oct 12 03:00 ATLAS.root_0
[2025-10-12 08:18:01] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 03:00 start_atlas.sh
[2025-10-12 08:18:01] -rw-r--r--. 2 boincer umatlas    569678 Oct 12 03:00 input.tar.gz
[2025-10-12 08:18:01] -rw-------. 1 boincer umatlas 193260719 Oct 12 08:16 HITS.pool.root.1
[2025-10-12 08:18:01] -rw-------. 1 boincer umatlas   1689600 Oct 12 08:18 result.tar.gz
08:18:23 (2365639): run_atlas exited; CPU time 51326.331674
08:18:23 (2365639): called boinc_finish(0)

</stderr_txt>
]]>

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