Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:55:57 (3476936): wrapper (7.7.26015): starting
21:55:57 (3476936): wrapper: running run_atlas (--nthreads 6)
[2025-10-12 21:55:57] Arguments: --nthreads 6
[2025-10-12 21:55:57] Threads: 6
[2025-10-12 21:55:57] Checking for CVMFS
[2025-10-12 21:55:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 21:55:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 21:55:57] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 21:55:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 21:55:58] 2.12.7.0 249871 5898 93484 151620 0 60 13894093 20971520 85 130560 0 10026684 99.995 206071 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-12 21:55:58] CVMFS is ok
[2025-10-12 21:55:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 21:55:58] Checking for apptainer binary...
[2025-10-12 21:55:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 21:55:58] Running /usr/bin/apptainer --version
[2025-10-12 21:55:58] apptainer version 1.4.0-1.el9
[2025-10-12 21:55:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 21:55:58] testio005
[2025-10-12 21:55:58] apptainer works
[2025-10-12 21:55:58] Set ATHENA_PROC_NUMBER=6
[2025-10-12 21:55:58] Set ATHENA_CORE_NUMBER=6
[2025-10-12 21:55:58] Starting ATLAS job with PandaID=6838852645
[2025-10-12 21:55:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:30:20]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:30:20]  mtime=0
[2025-10-12 23:30:20]  protocol_id=None
[2025-10-12 23:30:20]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 23:30:20]  replicas=None
[2025-10-12 23:30:20]  scope=mc23_13p6TeV
[2025-10-12 23:30:20]  status=None
[2025-10-12 23:30:20]  status_code=0
[2025-10-12 23:30:20]  storage_token=
[2025-10-12 23:30:20]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-6838852645/log.46676269._064427.job.log.tgz.1
[2025-10-12 23:30:20]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/45/b5/log.46676269._064427.job.log.tgz.1
[2025-10-12 23:30:20]  workdir=None
[2025-10-12 23:30:20] ]
[2025-10-12 23:30:20] 2025-10-12 14:29:14,717 | INFO     | transferring file log.46676269._064427.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6838852645/log.46676269._064427.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-12 23:30:20] 2025-10-12 14:29:14,717 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6838852645/log.46676269._064427.job.log.tgz.1 /var/lib/boinc/slots/1/log.46676269._064427.job
[2025-10-12 23:30:20] 2025-10-12 14:29:14,728 | INFO     | adding to output.list: log.46676269._064427.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/45/b5/log.46676269._064427.job.log.tg
[2025-10-12 23:30:20] 2025-10-12 14:29:14,729 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 23:30:20] 2025-10-12 14:29:14,729 | INFO     | summary of transferred files:
[2025-10-12 23:30:20] 2025-10-12 14:29:14,729 | INFO     |  -- lfn=log.46676269._064427.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 23:30:20] 2025-10-12 14:29:14,729 | INFO     | stage-out finished correctly
[2025-10-12 23:30:20] 2025-10-12 14:29:16,307 | INFO     | time since job start (5589s) is within the limit (172800.0s)
[2025-10-12 23:30:20] 2025-10-12 14:29:16,645 | INFO     | monitor loop #413: job 0:6838852645 is in state 'finished'
[2025-10-12 23:30:20] 2025-10-12 14:29:16,645 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:30:20] 2025-10-12 14:29:17,203 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 23:30:20] 2025-10-12 14:29:17,260 | INFO     | job 6838852645 has state=finished
[2025-10-12 23:30:20] 2025-10-12 14:29:17,260 | INFO     | preparing for final server update for job 6838852645 in state='finished'
[2025-10-12 23:30:20] 2025-10-12 14:29:17,260 | INFO     | this job has now completed (state=finished)
[2025-10-12 23:30:20] 2025-10-12 14:29:17,260 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 23:30:20] 2025-10-12 14:29:17,260 | INFO     | log transfer has been attempted: DONE
[2025-10-12 23:30:20] 2025-10-12 14:29:17,260 | INFO     | job 6838852645 has finished - writing final server update
[2025-10-12 23:30:20] 2025-10-12 14:29:17,261 | INFO     | total number of processed events: 400 (read)
[2025-10-12 23:30:20] 2025-10-12 14:29:17,261 | INFO     | executing command: lscpu
[2025-10-12 23:30:20] 2025-10-12 14:29:17,277 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 23:30:20] 2025-10-12 14:29:18,312 | INFO     | time since job start (5591s) is within the limit (172800.0s)
[2025-10-12 23:30:20] 2025-10-12 14:29:19,147 | INFO     | monitor loop #414: job 0:6838852645 is in state 'finished'
[2025-10-12 23:30:20] 2025-10-12 14:29:19,148 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:30:20] 2025-10-12 14:29:19,980 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 23:30:20] 2025-10-12 14:29:19,982 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3313.7996875
[2025-10-12 23:30:20] 2025-10-12 14:29:19,985 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6838852645/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 23:30:20] 2025-10-12 14:29:19,985 | INFO     | extracted standard info from prmon json
[2025-10-12 23:30:20] 2025-10-12 14:29:19,985 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 23:30:20] 2025-10-12 14:29:19,985 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 23:30:20] 2025-10-12 14:29:19,986 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 23:30:20] 2025-10-12 14:29:19,986 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 23:30:20] 2025-10-12 14:29:19,987 | INFO     | fitting pss+swap vs Time
[2025-10-12 23:30:20] 2025-10-12 14:29:19,987 | INFO     | sum of square deviations: 190403570.0
[2025-10-12 23:30:20] 2025-10-12 14:29:19,987 | INFO     | sum of deviations: -3855169744.000001
[2025-10-12 23:30:20] 2025-10-12 14:29:19,987 | INFO     | mean x: 1760276655.0
[2025-10-12 23:30:20] 2025-10-12 14:29:19,987 | INFO     | mean y: 2482976.494117647
[2025-10-12 23:30:20] 2025-10-12 14:29:19,987 | INFO     | -- intersect: 35643439190.84203
[2025-10-12 23:30:20] 2025-10-12 14:29:19,988 | INFO     | intersect: 35643439190.84203
[2025-10-12 23:30:20] 2025-10-12 14:29:19,988 | INFO     | chi2: 0.05006723961581756
[2025-10-12 23:30:20] 2025-10-12 14:29:19,988 | INFO     | -- intersect: 35643439190.84203
[2025-10-12 23:30:20] 2025-10-12 14:29:19,988 | INFO     | current memory leak: -20.25 B/s (using 85 data points, chi2=0.05)
[2025-10-12 23:30:20] 2025-10-12 14:29:19,988 | INFO     | could have reported an average CPU frequency of 3304 MHz (7 samples)
[2025-10-12 23:30:20] 2025-10-12 14:29:19,988 | INFO     | ..............................
[2025-10-12 23:30:20] 2025-10-12 14:29:19,988 | INFO     | . Timing measurements:
[2025-10-12 23:30:20] 2025-10-12 14:29:19,988 | INFO     | . get job = 0 s
[2025-10-12 23:30:20] 2025-10-12 14:29:19,988 | INFO     | . initial setup = 4 s
[2025-10-12 23:30:20] 2025-10-12 14:29:19,988 | INFO     | . payload setup = 3 s
[2025-10-12 23:30:20] 2025-10-12 14:29:19,988 | INFO     | . stage-in = 0 s
[2025-10-12 23:30:20] 2025-10-12 14:29:19,988 | INFO     | . payload execution = 5566 s
[2025-10-12 23:30:20] 2025-10-12 14:29:19,989 | INFO     | . stage-out = 0 s
[2025-10-12 23:30:20] 2025-10-12 14:29:19,989 | INFO     | . log creation = 0 s
[2025-10-12 23:30:20] 2025-10-12 14:29:19,989 | INFO     | ..............................
[2025-10-12 23:30:20] 2025-10-12 14:29:20,049 | INFO     | 
[2025-10-12 23:30:20] 2025-10-12 14:29:20,049 | INFO     | job summary report
[2025-10-12 23:30:20] 2025-10-12 14:29:20,049 | INFO     | --------------------------------------------------
[2025-10-12 23:30:20] 2025-10-12 14:29:20,049 | INFO     | PanDA job id: 6838852645
[2025-10-12 23:30:20] 2025-10-12 14:29:20,049 | INFO     | task id: 46676269
[2025-10-12 23:30:20] 2025-10-12 14:29:20,049 | INFO     | errors: (none)
[2025-10-12 23:30:20] 2025-10-12 14:29:20,050 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 23:30:20] 2025-10-12 14:29:20,050 | INFO     | pilot state: finished 
[2025-10-12 23:30:20] 2025-10-12 14:29:20,050 | INFO     | transexitcode: 0
[2025-10-12 23:30:20] 2025-10-12 14:29:20,050 | INFO     | exeerrorcode: 0
[2025-10-12 23:30:20] 2025-10-12 14:29:20,050 | INFO     | exeerrordiag: 
[2025-10-12 23:30:20] 2025-10-12 14:29:20,050 | INFO     | exitcode: 0
[2025-10-12 23:30:20] 2025-10-12 14:29:20,050 | INFO     | exitmsg: OK
[2025-10-12 23:30:20] 2025-10-12 14:29:20,050 | INFO     | cpuconsumptiontime: 30679 s
[2025-10-12 23:30:20] 2025-10-12 14:29:20,050 | INFO     | nevents: 400
[2025-10-12 23:30:20] 2025-10-12 14:29:20,050 | INFO     | neventsw: 0
[2025-10-12 23:30:20] 2025-10-12 14:29:20,050 | INFO     | pid: 3500564
[2025-10-12 23:30:20] 2025-10-12 14:29:20,050 | INFO     | pgrp: 3500564
[2025-10-12 23:30:20] 2025-10-12 14:29:20,050 | INFO     | corecount: 6
[2025-10-12 23:30:20] 2025-10-12 14:29:20,050 | INFO     | event service: False
[2025-10-12 23:30:20] 2025-10-12 14:29:20,050 | INFO     | sizes: {0: 2348857, 3: 2349119, 11: 2349147, 5573: 2384994, 5576: 2384994, 5579: 2385018}
[2025-10-12 23:30:20] 2025-10-12 14:29:20,050 | INFO     | --------------------------------------------------
[2025-10-12 23:30:20] 2025-10-12 14:29:20,050 | INFO     | 
[2025-10-12 23:30:20] 2025-10-12 14:29:20,050 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-12 23:30:20] 2025-10-12 14:29:20,062 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 23:30:20] 2025-10-12 14:29:20,062 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 23:30:20] 2025-10-12 14:29:20,063 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 23:30:20] 2025-10-12 14:29:20,063 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 23:30:20] 2025-10-12 14:29:20,063 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 23:30:20] 2025-10-12 14:29:20,063 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 23:30:20] 2025-10-12 14:29:20,063 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 23:30:20] 2025-10-12 14:29:20,063 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 23:30:20] 2025-10-12 14:29:20,063 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 23:30:20] 2025-10-12 14:29:20,063 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 23:30:20] 2025-10-12 14:29:20,063 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 23:30:20] 2025-10-12 14:29:20,063 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 23:30:20] 2025-10-12 14:29:20,063 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 23:30:20] 2025-10-12 14:29:20,063 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 23:30:20] 2025-10-12 14:29:20,063 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 23:30:20] 2025-10-12 14:29:20,063 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 23:30:20] 2025-10-12 14:29:20,063 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 23:30:20] 2025-10-12 14:29:20,063 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 23:30:20] 2025-10-12 14:29:20,063 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 23:30:20] 2025-10-12 14:29:20,064 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 23:30:20] 2025-10-12 14:29:20,064 | INFO     | job 6838852645 has completed (purged errors)
[2025-10-12 23:30:20] 2025-10-12 14:29:20,064 | INFO     | overall cleanup function is called
[2025-10-12 23:30:20] 2025-10-12 14:29:21,071 | INFO     | --- collectZombieJob: --- 10, [3500564]
[2025-10-12 23:30:20] 2025-10-12 14:29:21,071 | INFO     | zombie collector waiting for pid 3500564
[2025-10-12 23:30:20] 2025-10-12 14:29:21,071 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:30:20] 2025-10-12 14:29:21,071 | INFO     | collected zombie processes
[2025-10-12 23:30:20] 2025-10-12 14:29:21,071 | INFO     | will attempt to kill all subprocesses of pid=3500564
[2025-10-12 23:30:20] 2025-10-12 14:29:21,136 | INFO     | process IDs to be killed: [3500564] (in reverse order)
[2025-10-12 23:30:20] 2025-10-12 14:29:21,166 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:30:20] 2025-10-12 14:29:21,166 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:30:20] 2025-10-12 14:29:21,168 | INFO     | did not find any defunct processes belonging to 3500564
[2025-10-12 23:30:20] 2025-10-12 14:29:21,170 | INFO     | did not find any defunct processes belonging to 3500564
[2025-10-12 23:30:20] 2025-10-12 14:29:21,171 | INFO     | ready for new job
[2025-10-12 23:30:20] 2025-10-12 14:29:21,171 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:30:20] 2025-10-12 14:29:21,171 | INFO     | ***************************************
[2025-10-12 23:30:20] 2025-10-12 14:29:21,172 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:30:20] 2025-10-12 14:29:21,172 | INFO     | ***************************************
[2025-10-12 23:30:20] 2025-10-12 14:29:21,172 | INFO     | 
[2025-10-12 23:30:20] 2025-10-12 14:29:21,172 | INFO     | architecture information:
[2025-10-12 23:30:20] 2025-10-12 14:29:21,172 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:30:20] 2025-10-12 14:29:21,183 | INFO     | cat /etc/os-release:
[2025-10-12 23:30:20] NAME="CentOS Linux"
[2025-10-12 23:30:20] VERSION="7 (Core)"
[2025-10-12 23:30:20] ID="centos"
[2025-10-12 23:30:20] ID_LIKE="rhel fedora"
[2025-10-12 23:30:20] VERSION_ID="7"
[2025-10-12 23:30:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:30:20] ANSI_COLOR="0;31"
[2025-10-12 23:30:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:30:20] HOME_URL="https://www.centos.org/"
[2025-10-12 23:30:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:30:20] 
[2025-10-12 23:30:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:30:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:30:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:30:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:30:20] 
[2025-10-12 23:30:20] 2025-10-12 14:29:21,183 | INFO     | ***************************************
[2025-10-12 23:30:20] 2025-10-12 14:29:21,686 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-12 23:30:20] 2025-10-12 14:29:21,697 | INFO     | sufficient remaining disk space (96566509568 B)
[2025-10-12 23:30:20] 2025-10-12 14:29:21,698 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:30:20] 2025-10-12 14:29:21,698 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:30:20] 2025-10-12 14:29:21,698 | INFO     | update_server=False
[2025-10-12 23:30:20] 2025-10-12 14:29:21,698 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:30:20] 2025-10-12 14:29:21,698 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:30:20] 2025-10-12 14:29:22,182 | INFO     | all data control threads have been joined
[2025-10-12 23:30:20] 2025-10-12 14:29:22,656 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:30:20] 2025-10-12 14:29:22,656 | INFO     | aborting loop
[2025-10-12 23:30:20] 2025-10-12 14:29:22,704 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:30:20] 2025-10-12 14:29:22,704 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:30:20] 2025-10-12 14:29:22,757 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:30:20] 2025-10-12 14:29:22,799 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:30:20] 2025-10-12 14:29:23,088 | INFO     | all job control threads have been joined
[2025-10-12 23:30:20] 2025-10-12 14:29:23,110 | INFO     | all payload control threads have been joined
[2025-10-12 23:30:20] 2025-10-12 14:29:23,188 | INFO     | [data] control thread has finished
[2025-10-12 23:30:20] 2025-10-12 14:29:23,264 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:30:20] 2025-10-12 14:29:23,307 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:30:20] 2025-10-12 14:29:23,380 | INFO     | [job] validate thread has finished
[2025-10-12 23:30:20] 2025-10-12 14:29:23,610 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:30:20] 2025-10-12 14:29:23,662 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:30:20] 2025-10-12 14:29:23,685 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:30:20] 2025-10-12 14:29:23,737 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:30:20] 2025-10-12 14:29:23,779 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:30:20] 2025-10-12 14:29:24,094 | INFO     | [job] control thread has finished
[2025-10-12 23:30:20] 2025-10-12 14:29:24,116 | INFO     | [payload] control thread has finished
[2025-10-12 23:30:20] 2025-10-12 14:29:24,805 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:30:20] 2025-10-12 14:29:27,270 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:30:20] 2025-10-12 14:29:32,623 | INFO     | job.realtimelogging is not enabled
[2025-10-12 23:30:20] 2025-10-12 14:29:33,628 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:30:20] 2025-10-12 14:29:51,447 | INFO     | PID=3480727 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 23:30:20] 2025-10-12 14:29:51,448 | INFO     | .. there are 2 such processes running
[2025-10-12 23:30:20] 2025-10-12 14:29:51,448 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:30:20] 2025-10-12 14:29:51,448 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:30:20] 2025-10-12 14:29:51,448 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:30:20] 2025-10-12 14:30:15,077 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:30:20] 2025-10-12 14:30:15,664 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139793505888064)>', '<ExcThread(monitor, started 139792796874496)>']
[2025-10-12 23:30:20] 2025-10-12 14:30:16,580 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:30:20] 2025-10-12 14:30:16,580 | INFO     | [monitor] control thread has ended
[2025-10-12 23:30:20] 2025-10-12 14:30:20,690 | INFO     | all workflow threads have been joined
[2025-10-12 23:30:20] 2025-10-12 14:30:20,690 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:30:20] 2025-10-12 14:30:20,690 | INFO     | traces error code: 0
[2025-10-12 23:30:20] 2025-10-12 14:30:20,690 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:30:20] 2025-10-12 14:30:20,748 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:30:20] 2025-10-12 14:30:20,750 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:30:20] 2025-10-12 14:30:20,752 [wrapper] pilotpid: 3480727
[2025-10-12 23:30:20] 2025-10-12 14:30:20,753 [wrapper] Pilot exit status: 0
[2025-10-12 23:30:20] 2025-10-12 14:30:20,759 [wrapper] pandaids: 6838852645
[2025-10-12 23:30:20] 2025-10-12 14:30:20,779 [wrapper] cleanup supervisor_pilot 3517233 3480728
[2025-10-12 23:30:20] 2025-10-12 14:30:20,781 [wrapper] Test setup, not cleaning
[2025-10-12 23:30:20] 2025-10-12 14:30:20,783 [wrapper] apfmon messages muted
[2025-10-12 23:30:20] 2025-10-12 14:30:20,784 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:30:20] 2025-10-12 14:30:20,786 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:30:20]  *** Error codes and diagnostics ***
[2025-10-12 23:30:20]     "exeErrorCode": 0,
[2025-10-12 23:30:20]     "exeErrorDiag": "",
[2025-10-12 23:30:20]     "pilotErrorCode": 0,
[2025-10-12 23:30:20]     "pilotErrorDiag": "",
[2025-10-12 23:30:20]  *** Listing of results directory ***
[2025-10-12 23:30:20] total 407404
[2025-10-12 23:30:20] -rw-r--r--. 1 boinc boinc    557409 Oct 12 05:36 pilot3.tar.gz
[2025-10-12 23:30:20] -rw-r--r--. 1 boinc boinc      5112 Oct 12 05:38 queuedata.json
[2025-10-12 23:30:20] -rwx------. 1 boinc boinc     36292 Oct 12 05:38 runpilot2-wrapper.sh
[2025-10-12 23:30:20] -rw-r--r--. 1 boinc boinc       100 Oct 12 21:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:30:20] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 21:55 run_atlas
[2025-10-12 23:30:20] -rw-r--r--. 1 boinc boinc       105 Oct 12 21:55 job.xml
[2025-10-12 23:30:20] -rw-r--r--. 1 boinc boinc      9362 Oct 12 21:55 init_data.xml
[2025-10-12 23:30:20] -rw-r--r--. 2 boinc boinc 220121035 Oct 12 21:55 EVNT.46676267._002589.pool.root.1
[2025-10-12 23:30:20] -rw-r--r--. 2 boinc boinc     15120 Oct 12 21:55 start_atlas.sh
[2025-10-12 23:30:20] drwxrwx--x. 2 boinc boinc        68 Oct 12 21:55 shared
[2025-10-12 23:30:20] -rw-r--r--. 2 boinc boinc    569680 Oct 12 21:55 input.tar.gz
[2025-10-12 23:30:20] -rw-r--r--. 1 boinc boinc         0 Oct 12 21:55 boinc_lockfile
[2025-10-12 23:30:20] -rw-r--r--. 1 boinc boinc      2550 Oct 12 21:55 pandaJob.out
[2025-10-12 23:30:20] -rw-------. 1 boinc boinc    975512 Oct 12 21:56 agis_schedconf.cvmfs.json
[2025-10-12 23:30:20] -rw-------. 1 boinc boinc   1560580 Oct 12 21:56 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:30:20] drwx------. 5 boinc boinc      4096 Oct 12 21:56 pilot3
[2025-10-12 23:30:20] -rw-------. 1 boinc boinc 190906094 Oct 12 23:28 HITS.46676269._064427.pool.root.1
[2025-10-12 23:30:20] -rw-r--r--. 1 boinc boinc       529 Oct 12 23:29 boinc_task_state.xml
[2025-10-12 23:30:20] -rw-------. 1 boinc boinc      1018 Oct 12 23:29 memory_monitor_summary.json
[2025-10-12 23:30:20] -rw-------. 1 boinc boinc    315896 Oct 12 23:29 log.46676269._064427.job.log.tgz.1
[2025-10-12 23:30:20] -rw-------. 1 boinc boinc      7752 Oct 12 23:29 heartbeat.json
[2025-10-12 23:30:20] -rw-------. 1 boinc boinc        95 Oct 12 23:29 pilot_heartbeat.json
[2025-10-12 23:30:20] -rw-r--r--. 1 boinc boinc        27 Oct 12 23:30 wrapper_checkpoint.txt
[2025-10-12 23:30:20] -rw-r--r--. 1 boinc boinc      8192 Oct 12 23:30 boinc_mmap_file
[2025-10-12 23:30:20] -rw-------. 1 boinc boinc      4895 Oct 12 23:30 pilotlog.txt
[2025-10-12 23:30:20] -rw-------. 1 boinc boinc    815802 Oct 12 23:30 log.46676269._064427.job.log.1
[2025-10-12 23:30:20] -rw-------. 1 boinc boinc       357 Oct 12 23:30 output.list
[2025-10-12 23:30:20] -rw-r--r--. 1 boinc boinc       620 Oct 12 23:30 runtime_log
[2025-10-12 23:30:20] -rw-------. 1 boinc boinc   1146880 Oct 12 23:30 result.tar.gz
[2025-10-12 23:30:20] -rw-------. 1 boinc boinc       642 Oct 12 23:30 RzzKDmQXvR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmDYhNDmMRb8rm.diag
[2025-10-12 23:30:20] -rw-r--r--. 1 boinc boinc      8661 Oct 12 23:30 runtime_log.err
[2025-10-12 23:30:20] -rw-r--r--. 1 boinc boinc     21325 Oct 12 23:30 stderr.txt
[2025-10-12 23:30:20] HITS file was successfully produced:
[2025-10-12 23:30:20] -rw-------. 1 boinc boinc 190906094 Oct 12 23:28 shared/HITS.pool.root.1
[2025-10-12 23:30:20]  *** Contents of shared directory: ***
[2025-10-12 23:30:20] total 403092
[2025-10-12 23:30:20] -rw-r--r--. 2 boinc boinc 220121035 Oct 12 21:55 ATLAS.root_0
[2025-10-12 23:30:20] -rw-r--r--. 2 boinc boinc     15120 Oct 12 21:55 start_atlas.sh
[2025-10-12 23:30:20] -rw-r--r--. 2 boinc boinc    569680 Oct 12 21:55 input.tar.gz
[2025-10-12 23:30:20] -rw-------. 1 boinc boinc 190906094 Oct 12 23:28 HITS.pool.root.1
[2025-10-12 23:30:20] -rw-------. 1 boinc boinc   1146880 Oct 12 23:30 result.tar.gz
23:30:22 (3476936): run_atlas exited; CPU time 30741.412943
23:30:22 (3476936): called boinc_finish(0)

</stderr_txt>
]]>

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