Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:15:43 (2492702): wrapper (7.7.26015): starting
16:15:43 (2492702): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 16:15:43] Arguments: --nthreads 3
[2025-10-12 16:15:43] Threads: 3
[2025-10-12 16:15:43] Checking for CVMFS
[2025-10-12 16:15:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:15:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:15:44] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:15:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:15:44] 2.9.2.0 1632445 2920 81484 151623 4 1 28846186 36864000 0 130560 0 2238819 99.991 106753 874 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 16:15:44] CVMFS is ok
[2025-10-12 16:15:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 16:15:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 16:15:44] Further information can be found at the LHC@home message board.
[2025-10-12 16:15:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:15:44] Checking for apptainer binary...
[2025-10-12 16:15:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 16:15:44] Running /usr/bin/apptainer --version
[2025-10-12 16:15:44] apptainer version 1.4.1-1.1
[2025-10-12 16:15:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:15:44] atlasA223b
[2025-10-12 16:15:44] apptainer works
[2025-10-12 16:15:44] Set ATHENA_PROC_NUMBER=3
[2025-10-12 16:15:44] Set ATHENA_CORE_NUMBER=3
[2025-10-12 16:15:44] Starting ATLAS job with PandaID=6839317676
[2025-10-12 16:15:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 17:41:19]  *** The last 200 lines of the pilot log: ***
[2025-10-12 17:41:19] 2025-10-12 15:40:48,710 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 17:41:19] 2025-10-12 15:40:48,710 | INFO     | ***************************************
[2025-10-12 17:41:19] 2025-10-12 15:40:48,710 | INFO     | 
[2025-10-12 17:41:19] 2025-10-12 15:40:48,710 | INFO     | architecture information:
[2025-10-12 17:41:19] 2025-10-12 15:40:48,710 | INFO     | executing command: cat /etc/os-release
[2025-10-12 17:41:19] 2025-10-12 15:40:48,720 | INFO     | cat /etc/os-release:
[2025-10-12 17:41:19] NAME="CentOS Linux"
[2025-10-12 17:41:19] VERSION="7 (Core)"
[2025-10-12 17:41:19] ID="centos"
[2025-10-12 17:41:19] ID_LIKE="rhel fedora"
[2025-10-12 17:41:19] VERSION_ID="7"
[2025-10-12 17:41:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 17:41:19] ANSI_COLOR="0;31"
[2025-10-12 17:41:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 17:41:19] HOME_URL="https://www.centos.org/"
[2025-10-12 17:41:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 17:41:19] 
[2025-10-12 17:41:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 17:41:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 17:41:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 17:41:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 17:41:19] 
[2025-10-12 17:41:19] 2025-10-12 15:40:48,720 | INFO     | ***************************************
[2025-10-12 17:41:19] 2025-10-12 15:40:49,222 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 17:41:19] 2025-10-12 15:40:49,236 | INFO     | sufficient remaining disk space (376043470848 B)
[2025-10-12 17:41:19] 2025-10-12 15:40:49,236 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 17:41:19] 2025-10-12 15:40:49,236 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 17:41:19] 2025-10-12 15:40:49,236 | INFO     | update_server=False
[2025-10-12 17:41:19] 2025-10-12 15:40:49,236 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 17:41:19] 2025-10-12 15:40:49,236 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:41:19] 2025-10-12 15:40:49,729 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 17:41:19] 2025-10-12 15:40:49,729 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 17:41:19] 2025-10-12 15:40:49,730 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:41:19] 2025-10-12 15:40:49,730 | INFO     | will abort loop
[2025-10-12 17:41:19] 2025-10-12 15:40:50,065 | INFO     | all payload control threads have been joined
[2025-10-12 17:41:19] 2025-10-12 15:40:50,155 | INFO     | all job control threads have been joined
[2025-10-12 17:41:19] 2025-10-12 15:40:50,196 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 17:41:19] 2025-10-12 15:40:50,242 | INFO     | [job] queue monitor thread has finished
[2025-10-12 17:41:19] 2025-10-12 15:40:50,242 | INFO     | [job] retrieve thread has finished
[2025-10-12 17:41:19] 2025-10-12 15:40:50,255 | INFO     | all data control threads have been joined
[2025-10-12 17:41:19] 2025-10-12 15:40:50,423 | INFO     | [payload] failed_post thread has finished
[2025-10-12 17:41:19] 2025-10-12 15:40:50,513 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 17:41:19] 2025-10-12 15:40:50,735 | INFO     | [job] job monitor thread has finished
[2025-10-12 17:41:19] 2025-10-12 15:40:51,071 | INFO     | [payload] control thread has finished
[2025-10-12 17:41:19] 2025-10-12 15:40:51,072 | INFO     | [data] copytool_in thread has finished
[2025-10-12 17:41:19] 2025-10-12 15:40:51,159 | INFO     | [job] control thread has finished
[2025-10-12 17:41:19] 2025-10-12 15:40:51,208 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 17:41:19] 2025-10-12 15:40:51,261 | INFO     | [data] control thread has finished
[2025-10-12 17:41:19] 2025-10-12 15:40:51,261 | INFO     | [job] validate thread has finished
[2025-10-12 17:41:19] 2025-10-12 15:40:51,353 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 17:41:19] 2025-10-12 15:40:51,442 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 17:41:19] 2025-10-12 15:40:51,447 | INFO     | [payload] validate_post thread has finished
[2025-10-12 17:41:19] 2025-10-12 15:40:51,631 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 17:41:19] 2025-10-12 15:40:52,202 | INFO     | [data] copytool_out thread has finished
[2025-10-12 17:41:19] 2025-10-12 15:40:55,215 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 17:41:19] 2025-10-12 15:40:55,292 | INFO     | [monitor] cgroup control has ended
[2025-10-12 17:41:19] 2025-10-12 15:40:56,573 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139940093491008)>', '<ExcThread(monitor, started 139939094198016)>']
[2025-10-12 17:41:19] 2025-10-12 15:41:01,599 | INFO     | all workflow threads have been joined
[2025-10-12 17:41:19] 2025-10-12 15:41:01,599 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 17:41:19] 2025-10-12 15:41:01,599 | INFO     | traces error code: 0
[2025-10-12 17:41:19] 2025-10-12 15:41:01,599 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 17:41:19] 2025-10-12 15:41:19,131 | INFO     | PID=2496421 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 17:41:19] 2025-10-12 15:41:19,132 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 17:41:19] 2025-10-12 15:41:19,132 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 17:41:19] 2025-10-12 15:41:19,132 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 17:41:19] 2025-10-12 15:41:19,132 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 17:41:19] 2025-10-12 15:41:19,132 | INFO     | [monitor] control thread has ended
[2025-10-12 17:41:19] 2025-10-12 15:41:19,182 [wrapper] ==== pilot stdout END ====
[2025-10-12 17:41:19] 2025-10-12 15:41:19,184 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 17:41:19] 2025-10-12 15:41:19,187 [wrapper] pilotpid: 2496421
[2025-10-12 17:41:19] 2025-10-12 15:41:19,189 [wrapper] Pilot exit status: 0
[2025-10-12 17:41:19] 2025-10-12 15:41:19,197 [wrapper] pandaids: 6839317676
[2025-10-12 17:41:19] 2025-10-12 15:41:19,216 [wrapper] cleanup supervisor_pilot 2515083 2496422
[2025-10-12 17:41:19] 2025-10-12 15:41:19,219 [wrapper] Test setup, not cleaning
[2025-10-12 17:41:19] 2025-10-12 15:41:19,221 [wrapper] apfmon messages muted
[2025-10-12 17:41:19] 2025-10-12 15:41:19,224 [wrapper] ==== wrapper stdout END ====
[2025-10-12 17:41:19] 2025-10-12 15:41:19,226 [wrapper] ==== wrapper stderr END ====
[2025-10-12 17:41:19]  *** Error codes and diagnostics ***
[2025-10-12 17:41:19]     "exeErrorCode": 0,
[2025-10-12 17:41:19]     "exeErrorDiag": "",
[2025-10-12 17:41:19]     "pilotErrorCode": 0,
[2025-10-12 17:41:19]     "pilotErrorDiag": "",
[2025-10-12 17:41:19]  *** Listing of results directory ***
[2025-10-12 17:41:19] total 417184
[2025-10-12 17:41:19] -rw-r--r-- 1 boinc boinc    557409 Oct 12 04:56 pilot3.tar.gz
[2025-10-12 17:41:19] -rw-r--r-- 1 boinc boinc      5112 Oct 12 05:00 queuedata.json
[2025-10-12 17:41:19] -rwx------ 1 boinc boinc     36292 Oct 12 05:00 runpilot2-wrapper.sh
[2025-10-12 17:41:19] -rw-r--r-- 1 boinc boinc       100 Oct 12 16:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 17:41:19] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 16:15 run_atlas
[2025-10-12 17:41:19] -rw-r--r-- 1 boinc boinc       105 Oct 12 16:15 job.xml
[2025-10-12 17:41:19] -rw-r--r-- 2 boinc boinc 223691942 Oct 12 16:15 EVNT.46676267._003198.pool.root.1
[2025-10-12 17:41:19] -rw-r--r-- 2 boinc boinc    569677 Oct 12 16:15 input.tar.gz
[2025-10-12 17:41:19] -rw-r--r-- 2 boinc boinc     15120 Oct 12 16:15 start_atlas.sh
[2025-10-12 17:41:19] drwxrwx--x 2 boinc boinc      4096 Oct 12 16:15 shared
[2025-10-12 17:41:19] -rw-r--r-- 1 boinc boinc         0 Oct 12 16:15 boinc_setup_complete
[2025-10-12 17:41:19] -rw-r--r-- 1 boinc boinc      6449 Oct 12 16:15 init_data.xml
[2025-10-12 17:41:19] -rw-r--r-- 1 boinc boinc         0 Oct 12 16:15 boinc_lockfile
[2025-10-12 17:41:19] -rw-r--r-- 1 boinc boinc      2550 Oct 12 16:15 pandaJob.out
[2025-10-12 17:41:19] -rw------- 1 boinc boinc    975528 Oct 12 16:15 agis_schedconf.cvmfs.json
[2025-10-12 17:41:19] -rw------- 1 boinc boinc   1560580 Oct 12 16:15 agis_ddmendpoints.agis.ALL.json
[2025-10-12 17:41:19] drwx------ 5 boinc boinc      4096 Oct 12 16:15 pilot3
[2025-10-12 17:41:19] -rw------- 1 boinc boinc 197623520 Oct 12 17:40 HITS.46676269._069715.pool.root.1
[2025-10-12 17:41:19] -rw-r--r-- 1 boinc boinc       529 Oct 12 17:40 boinc_task_state.xml
[2025-10-12 17:41:19] -rw------- 1 boinc boinc      1017 Oct 12 17:40 memory_monitor_summary.json
[2025-10-12 17:41:19] -rw------- 1 boinc boinc    249748 Oct 12 17:40 log.46676269._069715.job.log.tgz.1
[2025-10-12 17:41:19] -rw------- 1 boinc boinc      7762 Oct 12 17:40 heartbeat.json
[2025-10-12 17:41:19] -rw-r--r-- 1 boinc boinc      8192 Oct 12 17:40 boinc_mmap_file
[2025-10-12 17:41:19] -rw-r--r-- 1 boinc boinc        27 Oct 12 17:40 wrapper_checkpoint.txt
[2025-10-12 17:41:19] -rw------- 1 boinc boinc       747 Oct 12 17:41 pilotlog.txt
[2025-10-12 17:41:19] -rw------- 1 boinc boinc        95 Oct 12 17:41 pilot_heartbeat.json
[2025-10-12 17:41:19] -rw------- 1 boinc boinc    746180 Oct 12 17:41 log.46676269._069715.job.log.1
[2025-10-12 17:41:19] -rw------- 1 boinc boinc       357 Oct 12 17:41 output.list
[2025-10-12 17:41:19] -rw-r--r-- 1 boinc boinc       620 Oct 12 17:41 runtime_log
[2025-10-12 17:41:19] -rw------- 1 boinc boinc   1013760 Oct 12 17:41 result.tar.gz
[2025-10-12 17:41:19] -rw-r--r-- 1 boinc boinc      8797 Oct 12 17:41 runtime_log.err
[2025-10-12 17:41:19] -rw------- 1 boinc boinc       662 Oct 12 17:41 YGEMDmFV1R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmg3SMDm5Sh7Co.diag
[2025-10-12 17:41:19] -rw-r--r-- 1 boinc boinc      9460 Oct 12 17:41 stderr.txt
[2025-10-12 17:41:19] HITS file was successfully produced:
[2025-10-12 17:41:19] -rw------- 1 boinc boinc 197623520 Oct 12 17:40 shared/HITS.pool.root.1
[2025-10-12 17:41:19]  *** Contents of shared directory: ***
[2025-10-12 17:41:19] total 413020
[2025-10-12 17:41:19] -rw-r--r-- 2 boinc boinc 223691942 Oct 12 16:15 ATLAS.root_0
[2025-10-12 17:41:19] -rw-r--r-- 2 boinc boinc    569677 Oct 12 16:15 input.tar.gz
[2025-10-12 17:41:19] -rw-r--r-- 2 boinc boinc     15120 Oct 12 16:15 start_atlas.sh
[2025-10-12 17:41:19] -rw------- 1 boinc boinc 197623520 Oct 12 17:40 HITS.pool.root.1
[2025-10-12 17:41:19] -rw------- 1 boinc boinc   1013760 Oct 12 17:41 result.tar.gz
17:41:21 (2492702): run_atlas exited; CPU time 14629.908831
17:41:21 (2492702): called boinc_finish(0)

</stderr_txt>
]]>

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