Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
05:55:10 (589987): wrapper (7.7.26015): starting
05:55:10 (589987): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 05:55:10] Arguments: --nthreads 12
[2025-10-12 05:55:10] Threads: 12
[2025-10-12 05:55:10] Checking for CVMFS
[2025-10-12 05:55:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 05:55:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 05:55:10] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 05:55:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 05:55:11] 2.11.0.0 3299214 2669 84284 151609 1 188 5304553 6144001 13922 130560 0 52371304 100.000 94090 198 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-12 05:55:11] CVMFS is ok
[2025-10-12 05:55:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 05:55:11] Checking for apptainer binary...
[2025-10-12 05:55:11] apptainer is not installed, using version from CVMFS
[2025-10-12 05:55:11] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 05:55:11] radiat0r
[2025-10-12 05:55:11] apptainer works
[2025-10-12 05:55:11] Set ATHENA_PROC_NUMBER=12
[2025-10-12 05:55:11] Set ATHENA_CORE_NUMBER=12
[2025-10-12 05:55:11] Starting ATLAS job with PandaID=6838852547
[2025-10-12 05:55:11] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 06:45:36]  *** The last 200 lines of the pilot log: ***
[2025-10-12 06:45:36]  storage_token=
[2025-10-12 06:45:36]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-6838852547/log.46676269._064329.job.log.tgz.1
[2025-10-12 06:45:36]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ef/7f/log.46676269._064329.job.log.tgz.1
[2025-10-12 06:45:36]  workdir=None
[2025-10-12 06:45:36] ]
[2025-10-12 06:45:36] 2025-10-12 06:44:24,198 | INFO     | transferring file log.46676269._064329.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6838852547/log.46676269._064329.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-12 06:45:36] 2025-10-12 06:44:24,198 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6838852547/log.46676269._064329.job.log.tgz.1 /var/lib/boinc/slots/1/log.46676269._064329.job
[2025-10-12 06:45:36] 2025-10-12 06:44:24,223 | INFO     | adding to output.list: log.46676269._064329.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ef/7f/log.46676269._064329.job.log.tg
[2025-10-12 06:45:36] 2025-10-12 06:44:24,224 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 06:45:36] 2025-10-12 06:44:24,224 | INFO     | summary of transferred files:
[2025-10-12 06:45:36] 2025-10-12 06:44:24,224 | INFO     |  -- lfn=log.46676269._064329.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 06:45:36] 2025-10-12 06:44:24,224 | INFO     | stage-out finished correctly
[2025-10-12 06:45:36] 2025-10-12 06:44:24,323 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 06:45:36] 2025-10-12 06:44:24,359 | INFO     | monitor loop #205: job 0:6838852547 is in state 'finished'
[2025-10-12 06:45:36] 2025-10-12 06:44:24,370 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 06:45:36] 2025-10-12 06:44:24,425 | INFO     | job 6838852547 has state=finished
[2025-10-12 06:45:36] 2025-10-12 06:44:24,426 | INFO     | preparing for final server update for job 6838852547 in state='finished'
[2025-10-12 06:45:36] 2025-10-12 06:44:24,426 | INFO     | this job has now completed (state=finished)
[2025-10-12 06:45:36] 2025-10-12 06:44:24,426 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 06:45:36] 2025-10-12 06:44:24,426 | INFO     | log transfer has been attempted: DONE
[2025-10-12 06:45:36] 2025-10-12 06:44:24,426 | INFO     | job 6838852547 has finished - writing final server update
[2025-10-12 06:45:36] 2025-10-12 06:44:24,427 | INFO     | total number of processed events: 400 (read)
[2025-10-12 06:45:36] 2025-10-12 06:44:24,428 | INFO     | executing command: lscpu
[2025-10-12 06:45:36] 2025-10-12 06:44:24,620 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 06:45:36] 2025-10-12 06:44:25,747 | INFO     | time since job start (2939s) is within the limit (172800.0s)
[2025-10-12 06:45:36] 2025-10-12 06:44:26,889 | INFO     | monitor loop #206: job 0:6838852547 is in state 'finished'
[2025-10-12 06:45:36] 2025-10-12 06:44:26,889 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 06:45:36] 2025-10-12 06:44:27,749 | INFO     | PID=594716 has CPU usage=23.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 06:45:36] 2025-10-12 06:44:27,750 | INFO     | .. there are 17 such processes running
[2025-10-12 06:45:36] 2025-10-12 06:44:28,750 | INFO     | time since job start (2942s) is within the limit (172800.0s)
[2025-10-12 06:45:36] 2025-10-12 06:44:29,392 | INFO     | monitor loop #207: job 0:6838852547 is in state 'finished'
[2025-10-12 06:45:36] 2025-10-12 06:44:29,393 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 06:45:36] 2025-10-12 06:44:30,756 | INFO     | time since job start (2944s) is within the limit (172800.0s)
[2025-10-12 06:45:36] 2025-10-12 06:44:31,321 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 06:45:36] 2025-10-12 06:44:31,383 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2295.792410156249
[2025-10-12 06:45:36] 2025-10-12 06:44:31,450 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6838852547/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 06:45:36] 2025-10-12 06:44:31,451 | INFO     | extracted standard info from prmon json
[2025-10-12 06:45:36] 2025-10-12 06:44:31,451 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 06:45:36] 2025-10-12 06:44:31,451 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 06:45:36] 2025-10-12 06:44:31,452 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 06:45:36] 2025-10-12 06:44:31,452 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 06:45:36] 2025-10-12 06:44:31,453 | INFO     | fitting pss+swap vs Time
[2025-10-12 06:45:36] 2025-10-12 06:44:31,453 | INFO     | sum of square deviations: 21358540.0
[2025-10-12 06:45:36] 2025-10-12 06:44:31,454 | INFO     | sum of deviations: 475535382.0
[2025-10-12 06:45:36] 2025-10-12 06:44:31,454 | INFO     | mean x: 1760250084.0
[2025-10-12 06:45:36] 2025-10-12 06:44:31,454 | INFO     | mean y: 2646514.3170731706
[2025-10-12 06:45:36] 2025-10-12 06:44:31,454 | INFO     | -- intersect: -39188290511.831345
[2025-10-12 06:45:36] 2025-10-12 06:44:31,454 | INFO     | intersect: -39188290511.831345
[2025-10-12 06:45:36] 2025-10-12 06:44:31,454 | INFO     | chi2: 0.00028169592774400195
[2025-10-12 06:45:36] 2025-10-12 06:44:31,454 | INFO     | -- intersect: -39188290511.831345
[2025-10-12 06:45:36] 2025-10-12 06:44:31,454 | INFO     | current memory leak: 22.26 B/s (using 41 data points, chi2=0.00)
[2025-10-12 06:45:36] 2025-10-12 06:44:31,454 | INFO     | could have reported an average CPU frequency of 2345 MHz (5 samples)
[2025-10-12 06:45:36] 2025-10-12 06:44:31,455 | INFO     | ..............................
[2025-10-12 06:45:36] 2025-10-12 06:44:31,455 | INFO     | . Timing measurements:
[2025-10-12 06:45:36] 2025-10-12 06:44:31,455 | INFO     | . get job = 0 s
[2025-10-12 06:45:36] 2025-10-12 06:44:31,455 | INFO     | . initial setup = 1 s
[2025-10-12 06:45:36] 2025-10-12 06:44:31,455 | INFO     | . payload setup = 7 s
[2025-10-12 06:45:36] 2025-10-12 06:44:31,455 | INFO     | . stage-in = 0 s
[2025-10-12 06:45:36] 2025-10-12 06:44:31,455 | INFO     | . payload execution = 2907 s
[2025-10-12 06:45:36] 2025-10-12 06:44:31,455 | INFO     | . stage-out = 0 s
[2025-10-12 06:45:36] 2025-10-12 06:44:31,455 | INFO     | . log creation = 0 s
[2025-10-12 06:45:36] 2025-10-12 06:44:31,455 | INFO     | ..............................
[2025-10-12 06:45:36] 2025-10-12 06:44:31,552 | INFO     | 
[2025-10-12 06:45:36] 2025-10-12 06:44:31,553 | INFO     | job summary report
[2025-10-12 06:45:36] 2025-10-12 06:44:31,553 | INFO     | --------------------------------------------------
[2025-10-12 06:45:36] 2025-10-12 06:44:31,553 | INFO     | PanDA job id: 6838852547
[2025-10-12 06:45:36] 2025-10-12 06:44:31,553 | INFO     | task id: 46676269
[2025-10-12 06:45:36] 2025-10-12 06:44:31,553 | INFO     | errors: (none)
[2025-10-12 06:45:36] 2025-10-12 06:44:31,553 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 06:45:36] 2025-10-12 06:44:31,553 | INFO     | pilot state: finished 
[2025-10-12 06:45:36] 2025-10-12 06:44:31,553 | INFO     | transexitcode: 0
[2025-10-12 06:45:36] 2025-10-12 06:44:31,553 | INFO     | exeerrorcode: 0
[2025-10-12 06:45:36] 2025-10-12 06:44:31,554 | INFO     | exeerrordiag: 
[2025-10-12 06:45:36] 2025-10-12 06:44:31,554 | INFO     | exitcode: 0
[2025-10-12 06:45:36] 2025-10-12 06:44:31,554 | INFO     | exitmsg: OK
[2025-10-12 06:45:36] 2025-10-12 06:44:31,554 | INFO     | cpuconsumptiontime: 31376 s
[2025-10-12 06:45:36] 2025-10-12 06:44:31,554 | INFO     | nevents: 400
[2025-10-12 06:45:36] 2025-10-12 06:44:31,554 | INFO     | neventsw: 0
[2025-10-12 06:45:36] 2025-10-12 06:44:31,554 | INFO     | pid: 609631
[2025-10-12 06:45:36] 2025-10-12 06:44:31,554 | INFO     | pgrp: 609631
[2025-10-12 06:45:36] 2025-10-12 06:44:31,554 | INFO     | corecount: 12
[2025-10-12 06:45:36] 2025-10-12 06:44:31,554 | INFO     | event service: False
[2025-10-12 06:45:36] 2025-10-12 06:44:31,554 | INFO     | sizes: {0: 2348857, 8: 2349119, 11: 2349147, 2919: 2374680, 2920: 2383734, 2927: 2383904}
[2025-10-12 06:45:36] 2025-10-12 06:44:31,555 | INFO     | --------------------------------------------------
[2025-10-12 06:45:36] 2025-10-12 06:44:31,555 | INFO     | 
[2025-10-12 06:45:36] 2025-10-12 06:44:31,555 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-12 06:45:36] 2025-10-12 06:44:31,588 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 06:45:36] 2025-10-12 06:44:31,588 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 06:45:36] 2025-10-12 06:44:31,588 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 06:45:36] 2025-10-12 06:44:31,588 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 06:45:36] 2025-10-12 06:44:31,588 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 06:45:36] 2025-10-12 06:44:31,588 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 06:45:36] 2025-10-12 06:44:31,589 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 06:45:36] 2025-10-12 06:44:31,589 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 06:45:36] 2025-10-12 06:44:31,589 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 06:45:36] 2025-10-12 06:44:31,589 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 06:45:36] 2025-10-12 06:44:31,589 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 06:45:36] 2025-10-12 06:44:31,589 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 06:45:36] 2025-10-12 06:44:31,589 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 06:45:36] 2025-10-12 06:44:31,589 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 06:45:36] 2025-10-12 06:44:31,589 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 06:45:36] 2025-10-12 06:44:31,589 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 06:45:36] 2025-10-12 06:44:31,589 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 06:45:36] 2025-10-12 06:44:31,590 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 06:45:36] 2025-10-12 06:44:31,590 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 06:45:36] 2025-10-12 06:44:31,590 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 06:45:36] 2025-10-12 06:44:31,590 | INFO     | job 6838852547 has completed (purged errors)
[2025-10-12 06:45:36] 2025-10-12 06:44:31,590 | INFO     | overall cleanup function is called
[2025-10-12 06:45:36] 2025-10-12 06:44:32,598 | INFO     | --- collectZombieJob: --- 10, [609631]
[2025-10-12 06:45:36] 2025-10-12 06:44:32,599 | INFO     | zombie collector waiting for pid 609631
[2025-10-12 06:45:36] 2025-10-12 06:44:32,599 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 06:45:36] 2025-10-12 06:44:32,599 | INFO     | collected zombie processes
[2025-10-12 06:45:36] 2025-10-12 06:44:32,599 | INFO     | will attempt to kill all subprocesses of pid=609631
[2025-10-12 06:45:36] 2025-10-12 06:44:33,448 | INFO     | process IDs to be killed: [609631] (in reverse order)
[2025-10-12 06:45:36] 2025-10-12 06:44:33,719 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 06:45:36] 2025-10-12 06:44:33,719 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 06:45:36] 2025-10-12 06:44:33,746 | INFO     | did not find any defunct processes belonging to 609631
[2025-10-12 06:45:36] 2025-10-12 06:44:33,772 | INFO     | did not find any defunct processes belonging to 609631
[2025-10-12 06:45:36] 2025-10-12 06:44:33,772 | INFO     | ready for new job
[2025-10-12 06:45:36] 2025-10-12 06:44:33,772 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 06:45:36] 2025-10-12 06:44:33,776 | INFO     | ***************************************
[2025-10-12 06:45:36] 2025-10-12 06:44:33,776 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 06:45:36] 2025-10-12 06:44:33,776 | INFO     | ***************************************
[2025-10-12 06:45:36] 2025-10-12 06:44:33,776 | INFO     | 
[2025-10-12 06:45:36] 2025-10-12 06:44:33,813 | INFO     | architecture information:
[2025-10-12 06:45:36] 2025-10-12 06:44:33,814 | INFO     | executing command: cat /etc/os-release
[2025-10-12 06:45:36] 2025-10-12 06:44:33,839 | INFO     | cat /etc/os-release:
[2025-10-12 06:45:36] NAME="CentOS Linux"
[2025-10-12 06:45:36] VERSION="7 (Core)"
[2025-10-12 06:45:36] ID="centos"
[2025-10-12 06:45:36] ID_LIKE="rhel fedora"
[2025-10-12 06:45:36] VERSION_ID="7"
[2025-10-12 06:45:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 06:45:36] ANSI_COLOR="0;31"
[2025-10-12 06:45:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 06:45:36] HOME_URL="https://www.centos.org/"
[2025-10-12 06:45:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 06:45:36] 
[2025-10-12 06:45:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 06:45:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 06:45:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 06:45:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 06:45:36] 
[2025-10-12 06:45:36] 2025-10-12 06:44:33,840 | INFO     | ***************************************
[2025-10-12 06:45:36] 2025-10-12 06:44:34,343 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-12 06:45:36] 2025-10-12 06:44:34,373 | INFO     | sufficient remaining disk space (1724625453056 B)
[2025-10-12 06:45:36] 2025-10-12 06:44:34,374 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 06:45:36] 2025-10-12 06:44:34,374 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 06:45:36] 2025-10-12 06:44:34,374 | INFO     | update_server=False
[2025-10-12 06:45:36] 2025-10-12 06:44:34,374 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 06:45:36] 2025-10-12 06:44:34,401 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 06:45:36] 2025-10-12 06:44:34,401 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 06:45:36] 2025-10-12 06:44:34,402 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 06:45:36] 2025-10-12 06:44:34,402 | INFO     | will abort loop
[2025-10-12 06:45:36] 2025-10-12 06:44:34,837 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 06:45:36] 2025-10-12 06:44:34,935 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 06:45:36] 2025-10-12 06:44:35,094 | INFO     | all payload control threads have been joined
[2025-10-12 06:45:36] 2025-10-12 06:44:35,314 | INFO     | all data control threads have been joined
[2025-10-12 06:45:36] 2025-10-12 06:44:35,375 | INFO     | [job] retrieve thread has finished
[2025-10-12 06:45:36] 2025-10-12 06:44:35,406 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 06:45:36] 2025-10-12 06:44:35,407 | INFO     | [job] job monitor thread has finished
[2025-10-12 06:45:36] 2025-10-12 06:44:35,566 | INFO     | [payload] validate_post thread has finished
[2025-10-12 06:45:36] 2025-10-12 06:44:35,626 | INFO     | all job control threads have been joined
[2025-10-12 06:45:36] 2025-10-12 06:44:35,834 | INFO     | [payload] failed_post thread has finished
[2025-10-12 06:45:36] 2025-10-12 06:44:36,098 | INFO     | [payload] control thread has finished
[2025-10-12 06:45:36] 2025-10-12 06:44:36,270 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 06:45:36] 2025-10-12 06:44:36,320 | INFO     | [data] control thread has finished
[2025-10-12 06:45:36] 2025-10-12 06:44:36,562 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 06:45:36] 2025-10-12 06:44:36,570 | INFO     | [job] validate thread has finished
[2025-10-12 06:45:36] 2025-10-12 06:44:36,630 | INFO     | [job] control thread has finished
[2025-10-12 06:45:36] 2025-10-12 06:44:36,830 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 06:45:36] 2025-10-12 06:44:36,843 | INFO     | [data] copytool_out thread has finished
[2025-10-12 06:45:36] 2025-10-12 06:44:36,858 | INFO     | [data] copytool_in thread has finished
[2025-10-12 06:45:36] 2025-10-12 06:44:37,570 | INFO     | [job] queue monitor thread has finished
[2025-10-12 06:45:36] 2025-10-12 06:44:38,941 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 06:45:36] 2025-10-12 06:44:45,342 | INFO     | job.realtimelogging is not enabled
[2025-10-12 06:45:36] 2025-10-12 06:44:46,346 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 06:45:36] 2025-10-12 06:45:04,625 | INFO     | PID=594716 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 06:45:36] 2025-10-12 06:45:04,625 | INFO     | .. there are 17 such processes running
[2025-10-12 06:45:36] 2025-10-12 06:45:04,625 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 06:45:36] 2025-10-12 06:45:04,625 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 06:45:36] 2025-10-12 06:45:04,625 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 06:45:36] 2025-10-12 06:45:30,118 | INFO     | [monitor] cgroup control has ended
[2025-10-12 06:45:36] 2025-10-12 06:45:30,538 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140618619377472)>', '<ExcThread(monitor, started 140617950680832)>']
[2025-10-12 06:45:36] 2025-10-12 06:45:30,734 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 06:45:36] 2025-10-12 06:45:30,735 | INFO     | [monitor] control thread has ended
[2025-10-12 06:45:36] 2025-10-12 06:45:35,562 | INFO     | all workflow threads have been joined
[2025-10-12 06:45:36] 2025-10-12 06:45:35,563 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 06:45:36] 2025-10-12 06:45:35,563 | INFO     | traces error code: 0
[2025-10-12 06:45:36] 2025-10-12 06:45:35,564 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 06:45:36] 2025-10-12 06:45:35,756 [wrapper] ==== pilot stdout END ====
[2025-10-12 06:45:36] 2025-10-12 06:45:35,760 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 06:45:36] 2025-10-12 06:45:35,764 [wrapper] pilotpid: 594716
[2025-10-12 06:45:36] 2025-10-12 06:45:35,768 [wrapper] Pilot exit status: 0
[2025-10-12 06:45:36] 2025-10-12 06:45:35,782 [wrapper] pandaids: 6838852547
[2025-10-12 06:45:36] 2025-10-12 06:45:35,968 [wrapper] cleanup supervisor_pilot  962212 594717
[2025-10-12 06:45:36] 2025-10-12 06:45:35,973 [wrapper] Test setup, not cleaning
[2025-10-12 06:45:36] 2025-10-12 06:45:35,977 [wrapper] apfmon messages muted
[2025-10-12 06:45:36] 2025-10-12 06:45:35,981 [wrapper] ==== wrapper stdout END ====
[2025-10-12 06:45:36] 2025-10-12 06:45:35,985 [wrapper] ==== wrapper stderr END ====
[2025-10-12 06:45:36]  *** Error codes and diagnostics ***
[2025-10-12 06:45:36]     "exeErrorCode": 0,
[2025-10-12 06:45:36]     "exeErrorDiag": "",
[2025-10-12 06:45:36]     "pilotErrorCode": 0,
[2025-10-12 06:45:36]     "pilotErrorDiag": "",
[2025-10-12 06:45:36]  *** Listing of results directory ***
[2025-10-12 06:45:36] total 404772
[2025-10-12 06:45:36] -rw-r--r-- 1 boinc boinc    557409 Oct 11 20:21 pilot3.tar.gz
[2025-10-12 06:45:36] -rw-r--r-- 1 boinc boinc      5112 Oct 11 20:30 queuedata.json
[2025-10-12 06:45:36] -rwx------ 1 boinc boinc     36292 Oct 11 20:31 runpilot2-wrapper.sh
[2025-10-12 06:45:36] -rw-r--r-- 1 boinc boinc       100 Oct 12 05:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 06:45:36] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 05:55 run_atlas
[2025-10-12 06:45:36] -rw-r--r-- 1 boinc boinc       105 Oct 12 05:55 job.xml
[2025-10-12 06:45:36] -rw-r--r-- 2 boinc boinc 222102540 Oct 12 05:55 EVNT.46676267._002585.pool.root.1
[2025-10-12 06:45:36] -rw-r--r-- 2 boinc boinc     15120 Oct 12 05:55 start_atlas.sh
[2025-10-12 06:45:36] drwxrwx--x 2 boinc boinc      4096 Oct 12 05:55 shared
[2025-10-12 06:45:36] -rw-r--r-- 2 boinc boinc    569682 Oct 12 05:55 input.tar.gz
[2025-10-12 06:45:36] -rw-r--r-- 1 boinc boinc      9395 Oct 12 05:55 init_data.xml
[2025-10-12 06:45:36] -rw-r--r-- 1 boinc boinc         0 Oct 12 05:55 boinc_setup_complete
[2025-10-12 06:45:36] -rw-r--r-- 1 boinc boinc         0 Oct 12 05:55 boinc_lockfile
[2025-10-12 06:45:36] -rw-r--r-- 1 boinc boinc      2550 Oct 12 05:55 pandaJob.out
[2025-10-12 06:45:36] -rw------- 1 boinc boinc    975528 Oct 12 05:55 agis_schedconf.cvmfs.json
[2025-10-12 06:45:36] -rw------- 1 boinc boinc   1560580 Oct 12 05:55 agis_ddmendpoints.agis.ALL.json
[2025-10-12 06:45:36] drwx------ 5 boinc boinc      4096 Oct 12 05:55 pilot3
[2025-10-12 06:45:36] -rw------- 1 boinc boinc 186848129 Oct 12 06:43 HITS.46676269._064329.pool.root.1
[2025-10-12 06:45:36] -rw-r--r-- 1 boinc boinc       529 Oct 12 06:43 boinc_task_state.xml
[2025-10-12 06:45:36] -rw------- 1 boinc boinc        95 Oct 12 06:44 pilot_heartbeat.json
[2025-10-12 06:45:36] -rw------- 1 boinc boinc      1028 Oct 12 06:44 memory_monitor_summary.json
[2025-10-12 06:45:36] -rw------- 1 boinc boinc    372235 Oct 12 06:44 log.46676269._064329.job.log.tgz.1
[2025-10-12 06:45:36] -rw------- 1 boinc boinc      7747 Oct 12 06:44 heartbeat.json
[2025-10-12 06:45:36] -rw-r--r-- 1 boinc boinc        27 Oct 12 06:45 wrapper_checkpoint.txt
[2025-10-12 06:45:36] -rw-r--r-- 1 boinc boinc      8192 Oct 12 06:45 boinc_mmap_file
[2025-10-12 06:45:36] -rw------- 1 boinc boinc      5083 Oct 12 06:45 pilotlog.txt
[2025-10-12 06:45:36] -rw------- 1 boinc boinc    440543 Oct 12 06:45 log.46676269._064329.job.log.1
[2025-10-12 06:45:36] -rw------- 1 boinc boinc       357 Oct 12 06:45 output.list
[2025-10-12 06:45:36] -rw-r--r-- 1 boinc boinc       620 Oct 12 06:45 runtime_log
[2025-10-12 06:45:36] -rw------- 1 boinc boinc    829440 Oct 12 06:45 result.tar.gz
[2025-10-12 06:45:36] -rw-r--r-- 1 boinc boinc      8658 Oct 12 06:45 runtime_log.err
[2025-10-12 06:45:36] -rw------- 1 boinc boinc       644 Oct 12 06:45 jo9MDmOQvR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmMWSMDmZ5vnNn.diag
[2025-10-12 06:45:36] -rw-r--r-- 1 boinc boinc     21908 Oct 12 06:45 stderr.txt
[2025-10-12 06:45:36] HITS file was successfully produced:
[2025-10-12 06:45:36] -rw------- 1 boinc boinc 186848129 Oct 12 06:43 shared/HITS.pool.root.1
[2025-10-12 06:45:36]  *** Contents of shared directory: ***
[2025-10-12 06:45:36] total 400768
[2025-10-12 06:45:36] -rw-r--r-- 2 boinc boinc 222102540 Oct 12 05:55 ATLAS.root_0
[2025-10-12 06:45:36] -rw-r--r-- 2 boinc boinc     15120 Oct 12 05:55 start_atlas.sh
[2025-10-12 06:45:36] -rw-r--r-- 2 boinc boinc    569682 Oct 12 05:55 input.tar.gz
[2025-10-12 06:45:36] -rw------- 1 boinc boinc 186848129 Oct 12 06:43 HITS.pool.root.1
[2025-10-12 06:45:36] -rw------- 1 boinc boinc    829440 Oct 12 06:45 result.tar.gz
06:45:37 (589987): run_atlas exited; CPU time 31556.974032
06:45:37 (589987): called boinc_finish(0)

</stderr_txt>
]]>

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