Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:03:08 (973009): wrapper (7.7.26015): starting
16:03:08 (973009): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 16:03:08] Arguments: --nthreads 3
[2025-10-12 16:03:08] Threads: 3
[2025-10-12 16:03:08] Checking for CVMFS
[2025-10-12 16:03:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:03:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:03:08] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:03:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:03:08] 2.9.2.0 3005 3152 81816 151621 3 57 29392517 36864001 0 130560 0 2559611 99.991 113724 952 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 16:03:08] CVMFS is ok
[2025-10-12 16:03:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 16:03:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 16:03:08] Further information can be found at the LHC@home message board.
[2025-10-12 16:03:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:03:08] Checking for apptainer binary...
[2025-10-12 16:03:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 16:03:08] Running /usr/bin/apptainer --version
[2025-10-12 16:03:08] apptainer version 1.4.1-1.1
[2025-10-12 16:03:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:03:08] thA335b
[2025-10-12 16:03:08] apptainer works
[2025-10-12 16:03:08] Set ATHENA_PROC_NUMBER=3
[2025-10-12 16:03:08] Set ATHENA_CORE_NUMBER=3
[2025-10-12 16:03:08] Starting ATLAS job with PandaID=6839163789
[2025-10-12 16:03:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 17:25:25]  *** The last 200 lines of the pilot log: ***
[2025-10-12 17:25:25] 2025-10-12 15:25:00,107 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 17:25:25] 2025-10-12 15:25:00,107 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 17:25:25] 2025-10-12 15:25:00,107 | INFO     | job 6839163789 has completed (purged errors)
[2025-10-12 17:25:25] 2025-10-12 15:25:00,107 | INFO     | overall cleanup function is called
[2025-10-12 17:25:25] 2025-10-12 15:25:01,068 | INFO     | PID=976721 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 17:25:25] 2025-10-12 15:25:01,114 | INFO     | --- collectZombieJob: --- 10, [983156]
[2025-10-12 17:25:25] 2025-10-12 15:25:01,114 | INFO     | zombie collector waiting for pid 983156
[2025-10-12 17:25:25] 2025-10-12 15:25:01,114 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 17:25:25] 2025-10-12 15:25:01,114 | INFO     | collected zombie processes
[2025-10-12 17:25:25] 2025-10-12 15:25:01,114 | INFO     | will attempt to kill all subprocesses of pid=983156
[2025-10-12 17:25:25] 2025-10-12 15:25:01,155 | INFO     | process IDs to be killed: [983156] (in reverse order)
[2025-10-12 17:25:25] 2025-10-12 15:25:01,179 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 17:25:25] 2025-10-12 15:25:01,179 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 17:25:25] 2025-10-12 15:25:01,180 | INFO     | did not find any defunct processes belonging to 983156
[2025-10-12 17:25:25] 2025-10-12 15:25:01,181 | INFO     | did not find any defunct processes belonging to 983156
[2025-10-12 17:25:25] 2025-10-12 15:25:01,182 | INFO     | ready for new job
[2025-10-12 17:25:25] 2025-10-12 15:25:01,182 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 17:25:25] 2025-10-12 15:25:01,182 | INFO     | ***************************************
[2025-10-12 17:25:25] 2025-10-12 15:25:01,182 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 17:25:25] 2025-10-12 15:25:01,182 | INFO     | ***************************************
[2025-10-12 17:25:25] 2025-10-12 15:25:01,182 | INFO     | 
[2025-10-12 17:25:25] 2025-10-12 15:25:01,183 | INFO     | architecture information:
[2025-10-12 17:25:25] 2025-10-12 15:25:01,183 | INFO     | executing command: cat /etc/os-release
[2025-10-12 17:25:25] 2025-10-12 15:25:01,191 | INFO     | cat /etc/os-release:
[2025-10-12 17:25:25] NAME="CentOS Linux"
[2025-10-12 17:25:25] VERSION="7 (Core)"
[2025-10-12 17:25:25] ID="centos"
[2025-10-12 17:25:25] ID_LIKE="rhel fedora"
[2025-10-12 17:25:25] VERSION_ID="7"
[2025-10-12 17:25:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 17:25:25] ANSI_COLOR="0;31"
[2025-10-12 17:25:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 17:25:25] HOME_URL="https://www.centos.org/"
[2025-10-12 17:25:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 17:25:25] 
[2025-10-12 17:25:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 17:25:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 17:25:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 17:25:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 17:25:25] 
[2025-10-12 17:25:25] 2025-10-12 15:25:01,191 | INFO     | ***************************************
[2025-10-12 17:25:25] 2025-10-12 15:25:01,694 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 17:25:25] 2025-10-12 15:25:01,706 | INFO     | sufficient remaining disk space (375490871296 B)
[2025-10-12 17:25:25] 2025-10-12 15:25:01,707 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 17:25:25] 2025-10-12 15:25:01,707 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 17:25:25] 2025-10-12 15:25:01,707 | INFO     | update_server=False
[2025-10-12 17:25:25] 2025-10-12 15:25:01,707 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 17:25:25] 2025-10-12 15:25:01,707 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:25:25] 2025-10-12 15:25:01,707 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 17:25:25] 2025-10-12 15:25:01,707 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-12 17:25:25] 2025-10-12 15:25:01,707 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 17:25:25] 2025-10-12 15:25:01,707 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 17:25:25] 2025-10-12 15:25:01,708 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 17:25:25] 2025-10-12 15:25:01,708 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 17:25:25] 2025-10-12 15:25:02,054 | INFO     | all payload control threads have been joined
[2025-10-12 17:25:25] 2025-10-12 15:25:02,178 | INFO     | all job control threads have been joined
[2025-10-12 17:25:25] 2025-10-12 15:25:02,224 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:25:25] 2025-10-12 15:25:02,224 | INFO     | aborting loop
[2025-10-12 17:25:25] 2025-10-12 15:25:02,474 | INFO     | all data control threads have been joined
[2025-10-12 17:25:25] 2025-10-12 15:25:02,712 | INFO     | [job] queue monitor thread has finished
[2025-10-12 17:25:25] 2025-10-12 15:25:02,712 | INFO     | [job] retrieve thread has finished
[2025-10-12 17:25:25] 2025-10-12 15:25:02,722 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 17:25:25] 2025-10-12 15:25:02,797 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 17:25:25] 2025-10-12 15:25:03,059 | INFO     | [payload] control thread has finished
[2025-10-12 17:25:25] 2025-10-12 15:25:03,184 | INFO     | [job] control thread has finished
[2025-10-12 17:25:25] 2025-10-12 15:25:03,230 | INFO     | [job] job monitor thread has finished
[2025-10-12 17:25:25] 2025-10-12 15:25:03,230 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 17:25:25] 2025-10-12 15:25:03,243 | INFO     | [payload] failed_post thread has finished
[2025-10-12 17:25:25] 2025-10-12 15:25:03,480 | INFO     | [data] control thread has finished
[2025-10-12 17:25:25] 2025-10-12 15:25:03,530 | INFO     | [data] copytool_in thread has finished
[2025-10-12 17:25:25] 2025-10-12 15:25:03,714 | INFO     | [data] copytool_out thread has finished
[2025-10-12 17:25:25] 2025-10-12 15:25:03,959 | INFO     | [payload] validate_post thread has finished
[2025-10-12 17:25:25] 2025-10-12 15:25:04,067 | INFO     | [job] validate thread has finished
[2025-10-12 17:25:25] 2025-10-12 15:25:04,179 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 17:25:25] 2025-10-12 15:25:05,714 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 17:25:25] 2025-10-12 15:25:19,793 | INFO     | [monitor] cgroup control has ended
[2025-10-12 17:25:25] 2025-10-12 15:25:20,361 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140018773075776)>', '<ExcThread(monitor, started 140018123261696)>']
[2025-10-12 17:25:25] 2025-10-12 15:25:20,801 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 17:25:25] 2025-10-12 15:25:20,802 | INFO     | [monitor] control thread has ended
[2025-10-12 17:25:25] 2025-10-12 15:25:25,387 | INFO     | all workflow threads have been joined
[2025-10-12 17:25:25] 2025-10-12 15:25:25,387 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 17:25:25] 2025-10-12 15:25:25,387 | INFO     | traces error code: 0
[2025-10-12 17:25:25] 2025-10-12 15:25:25,388 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 17:25:25] 2025-10-12 15:25:25,437 [wrapper] ==== pilot stdout END ====
[2025-10-12 17:25:25] 2025-10-12 15:25:25,439 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 17:25:25] 2025-10-12 15:25:25,442 [wrapper] pilotpid: 976721
[2025-10-12 17:25:25] 2025-10-12 15:25:25,444 [wrapper] Pilot exit status: 0
[2025-10-12 17:25:25] 2025-10-12 15:25:25,451 [wrapper] pandaids: 6839163789
[2025-10-12 17:25:25] 2025-10-12 15:25:25,466 [wrapper] cleanup supervisor_pilot  995172 976722
[2025-10-12 17:25:25] 2025-10-12 15:25:25,469 [wrapper] Test setup, not cleaning
[2025-10-12 17:25:25] 2025-10-12 15:25:25,471 [wrapper] apfmon messages muted
[2025-10-12 17:25:25] 2025-10-12 15:25:25,473 [wrapper] ==== wrapper stdout END ====
[2025-10-12 17:25:25] 2025-10-12 15:25:25,476 [wrapper] ==== wrapper stderr END ====
[2025-10-12 17:25:25]  *** Error codes and diagnostics ***
[2025-10-12 17:25:25]     "exeErrorCode": 0,
[2025-10-12 17:25:25]     "exeErrorDiag": "",
[2025-10-12 17:25:25]     "pilotErrorCode": 0,
[2025-10-12 17:25:25]     "pilotErrorDiag": "",
[2025-10-12 17:25:25]  *** Listing of results directory ***
[2025-10-12 17:25:25] total 420324
[2025-10-12 17:25:25] -rw-r--r-- 1 boinc boinc    557409 Oct 12 02:05 pilot3.tar.gz
[2025-10-12 17:25:25] -rw-r--r-- 1 boinc boinc      5112 Oct 12 02:17 queuedata.json
[2025-10-12 17:25:25] -rwx------ 1 boinc boinc     36292 Oct 12 02:19 runpilot2-wrapper.sh
[2025-10-12 17:25:25] -rw-r--r-- 1 boinc boinc       100 Oct 12 16:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 17:25:25] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 16:03 run_atlas
[2025-10-12 17:25:25] -rw-r--r-- 1 boinc boinc       105 Oct 12 16:03 job.xml
[2025-10-12 17:25:25] -rw-r--r-- 2 boinc boinc 222927020 Oct 12 16:03 EVNT.46676267._002753.pool.root.1
[2025-10-12 17:25:25] -rw-r--r-- 2 boinc boinc    569680 Oct 12 16:03 input.tar.gz
[2025-10-12 17:25:25] -rw-r--r-- 2 boinc boinc     15120 Oct 12 16:03 start_atlas.sh
[2025-10-12 17:25:25] drwxrwx--x 2 boinc boinc      4096 Oct 12 16:03 shared
[2025-10-12 17:25:25] -rw-r--r-- 1 boinc boinc         0 Oct 12 16:03 boinc_setup_complete
[2025-10-12 17:25:25] -rw-r--r-- 1 boinc boinc      6445 Oct 12 16:03 init_data.xml
[2025-10-12 17:25:25] -rw-r--r-- 1 boinc boinc         0 Oct 12 16:03 boinc_lockfile
[2025-10-12 17:25:25] -rw-r--r-- 1 boinc boinc      2550 Oct 12 16:03 pandaJob.out
[2025-10-12 17:25:25] -rw------- 1 boinc boinc    975528 Oct 12 16:03 agis_schedconf.cvmfs.json
[2025-10-12 17:25:25] -rw------- 1 boinc boinc   1560580 Oct 12 16:03 agis_ddmendpoints.agis.ALL.json
[2025-10-12 17:25:25] drwx------ 5 boinc boinc      4096 Oct 12 16:03 pilot3
[2025-10-12 17:25:25] -rw------- 1 boinc boinc 201624512 Oct 12 17:24 HITS.46676269._067493.pool.root.1
[2025-10-12 17:25:25] -rw------- 1 boinc boinc        95 Oct 12 17:24 pilot_heartbeat.json
[2025-10-12 17:25:25] -rw-r--r-- 1 boinc boinc       529 Oct 12 17:24 boinc_task_state.xml
[2025-10-12 17:25:25] -rw------- 1 boinc boinc      1014 Oct 12 17:24 memory_monitor_summary.json
[2025-10-12 17:25:25] -rw------- 1 boinc boinc    262181 Oct 12 17:24 log.46676269._067493.job.log.tgz.1
[2025-10-12 17:25:25] -rw------- 1 boinc boinc      7759 Oct 12 17:24 heartbeat.json
[2025-10-12 17:25:25] -rw-r--r-- 1 boinc boinc        27 Oct 12 17:25 wrapper_checkpoint.txt
[2025-10-12 17:25:25] -rw-r--r-- 1 boinc boinc      8192 Oct 12 17:25 boinc_mmap_file
[2025-10-12 17:25:25] -rw------- 1 boinc boinc      4556 Oct 12 17:25 pilotlog.txt
[2025-10-12 17:25:25] -rw------- 1 boinc boinc    720596 Oct 12 17:25 log.46676269._067493.job.log.1
[2025-10-12 17:25:25] -rw------- 1 boinc boinc       357 Oct 12 17:25 output.list
[2025-10-12 17:25:25] -rw-r--r-- 1 boinc boinc       620 Oct 12 17:25 runtime_log
[2025-10-12 17:25:25] -rw------- 1 boinc boinc   1003520 Oct 12 17:25 result.tar.gz
[2025-10-12 17:25:25] -rw-r--r-- 1 boinc boinc      8782 Oct 12 17:25 runtime_log.err
[2025-10-12 17:25:25] -rw------- 1 boinc boinc       659 Oct 12 17:25 6hOLDm8yyR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmM2hNDmPtyrTn.diag
[2025-10-12 17:25:25] -rw-r--r-- 1 boinc boinc     11148 Oct 12 17:25 stderr.txt
[2025-10-12 17:25:25] HITS file was successfully produced:
[2025-10-12 17:25:25] -rw------- 1 boinc boinc 201624512 Oct 12 17:24 shared/HITS.pool.root.1
[2025-10-12 17:25:25]  *** Contents of shared directory: ***
[2025-10-12 17:25:25] total 416168
[2025-10-12 17:25:25] -rw-r--r-- 2 boinc boinc 222927020 Oct 12 16:03 ATLAS.root_0
[2025-10-12 17:25:25] -rw-r--r-- 2 boinc boinc    569680 Oct 12 16:03 input.tar.gz
[2025-10-12 17:25:25] -rw-r--r-- 2 boinc boinc     15120 Oct 12 16:03 start_atlas.sh
[2025-10-12 17:25:25] -rw------- 1 boinc boinc 201624512 Oct 12 17:24 HITS.pool.root.1
[2025-10-12 17:25:25] -rw------- 1 boinc boinc   1003520 Oct 12 17:25 result.tar.gz
17:25:27 (973009): run_atlas exited; CPU time 14044.841343
17:25:27 (973009): called boinc_finish(0)

</stderr_txt>
]]>

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