Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:04:59 (8341): wrapper (7.7.26015): starting
01:04:59 (8341): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 01:04:59] Arguments: --nthreads 8
[2025-10-12 01:04:59] Threads: 8
[2025-10-12 01:04:59] Checking for CVMFS
[2025-10-12 01:04:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 01:04:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 01:04:59] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 01:04:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 01:04:59] 2.11.2.0 2913 8057 78796 151608 2 59 15116155 20275200 1 130560 0 5174229 99.989 269669 39622 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 01:04:59] CVMFS is ok
[2025-10-12 01:04:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 01:04:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 01:04:59] Further information can be found at the LHC@home message board.
[2025-10-12 01:04:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 01:04:59] Checking for apptainer binary...
[2025-10-12 01:04:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 01:04:59] Running /usr/bin/apptainer --version
[2025-10-12 01:04:59] apptainer version 1.3.2-1.el7
[2025-10-12 01:04:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 01:05:00] c-115-15.aglt2.org
[2025-10-12 01:05:00] apptainer works
[2025-10-12 01:05:00] Set ATHENA_PROC_NUMBER=8
[2025-10-12 01:05:00] Set ATHENA_CORE_NUMBER=8
[2025-10-12 01:05:00] Starting ATLAS job with PandaID=6839163117
[2025-10-12 01:05:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 03:01:34]  *** The last 200 lines of the pilot log: ***
[2025-10-12 03:01:34] 2025-10-12 07:00:33,429 | INFO     | -- intersect: -56404149728.36247
[2025-10-12 03:01:34] 2025-10-12 07:00:33,429 | INFO     | intersect: -56404149728.36247
[2025-10-12 03:01:34] 2025-10-12 07:00:33,429 | INFO     | chi2: 1.3477937607896844
[2025-10-12 03:01:34] 2025-10-12 07:00:33,429 | INFO     | sum of square deviations: 390582207.0
[2025-10-12 03:01:34] 2025-10-12 07:00:33,430 | INFO     | sum of deviations: 13618309353.0
[2025-10-12 03:01:34] 2025-10-12 07:00:33,430 | INFO     | mean x: 1760248811.5
[2025-10-12 03:01:34] 2025-10-12 07:00:33,430 | INFO     | mean y: 2490016.611111111
[2025-10-12 03:01:34] 2025-10-12 07:00:33,430 | INFO     | -- intersect: -61371562420.08267
[2025-10-12 03:01:34] 2025-10-12 07:00:33,430 | INFO     | intersect: -61371562420.08267
[2025-10-12 03:01:34] 2025-10-12 07:00:33,430 | INFO     | chi2: 1.3501555880094898
[2025-10-12 03:01:34] 2025-10-12 07:00:33,430 | INFO     | current chi2=1.3501555880094898 (change=-0.17523654497566182 %)
[2025-10-12 03:01:34] 2025-10-12 07:00:33,431 | INFO     | right removable region: 107
[2025-10-12 03:01:34] 2025-10-12 07:00:33,431 | INFO     | sum of square deviations: 390582207.0
[2025-10-12 03:01:34] 2025-10-12 07:00:33,431 | INFO     | sum of deviations: -935208263.0000004
[2025-10-12 03:01:34] 2025-10-12 07:00:33,431 | INFO     | mean x: 1760249116.5
[2025-10-12 03:01:34] 2025-10-12 07:00:33,431 | INFO     | mean y: 2532027.0185185187
[2025-10-12 03:01:34] 2025-10-12 07:00:33,432 | INFO     | -- intersect: 4217264519.1446905
[2025-10-12 03:01:34] 2025-10-12 07:00:33,432 | INFO     | intersect: 4217264519.1446905
[2025-10-12 03:01:34] 2025-10-12 07:00:33,432 | INFO     | chi2: 0.034670045101230625
[2025-10-12 03:01:34] 2025-10-12 07:00:33,432 | INFO     | current chi2=0.034670045101230625 (change=97.42764463600743 %)
[2025-10-12 03:01:34] 2025-10-12 07:00:33,432 | INFO     | sum of square deviations: 338804492.0
[2025-10-12 03:01:34] 2025-10-12 07:00:33,433 | INFO     | sum of deviations: 1665429319.9999998
[2025-10-12 03:01:34] 2025-10-12 07:00:33,433 | INFO     | mean x: 1760249269.0
[2025-10-12 03:01:34] 2025-10-12 07:00:33,433 | INFO     | mean y: 2524229.6213592235
[2025-10-12 03:01:34] 2025-10-12 07:00:33,433 | INFO     | -- intersect: -8650167255.653183
[2025-10-12 03:01:34] 2025-10-12 07:00:33,433 | INFO     | intersect: -8650167255.653183
[2025-10-12 03:01:34] 2025-10-12 07:00:33,433 | INFO     | chi2: 0.00019157255397172558
[2025-10-12 03:01:34] 2025-10-12 07:00:33,433 | INFO     | current chi2=0.00019157255397172558 (change=99.44744071312176 %)
[2025-10-12 03:01:34] 2025-10-12 07:00:33,434 | INFO     | sum of square deviations: 291817564.5
[2025-10-12 03:01:34] 2025-10-12 07:00:33,434 | INFO     | sum of deviations: 1314252991.0
[2025-10-12 03:01:34] 2025-10-12 07:00:33,434 | INFO     | mean x: 1760249421.5
[2025-10-12 03:01:34] 2025-10-12 07:00:33,434 | INFO     | mean y: 2525366.3673469387
[2025-10-12 03:01:34] 2025-10-12 07:00:33,434 | INFO     | -- intersect: -7925075122.9184675
[2025-10-12 03:01:34] 2025-10-12 07:00:33,435 | INFO     | intersect: -7925075122.9184675
[2025-10-12 03:01:34] 2025-10-12 07:00:33,435 | INFO     | chi2: 0.00013039464756190575
[2025-10-12 03:01:34] 2025-10-12 07:00:33,435 | INFO     | current chi2=0.00013039464756190575 (change=31.934588301646354 %)
[2025-10-12 03:01:34] 2025-10-12 07:00:33,435 | INFO     | sum of square deviations: 249388862.0
[2025-10-12 03:01:34] 2025-10-12 07:00:33,435 | INFO     | sum of deviations: 1052301118.0000001
[2025-10-12 03:01:34] 2025-10-12 07:00:33,436 | INFO     | mean x: 1760249574.0
[2025-10-12 03:01:34] 2025-10-12 07:00:33,436 | INFO     | mean y: 2526307.88172043
[2025-10-12 03:01:34] 2025-10-12 07:00:33,436 | INFO     | -- intersect: -7424880753.622189
[2025-10-12 03:01:34] 2025-10-12 07:00:33,436 | INFO     | intersect: -7424880753.622189
[2025-10-12 03:01:34] 2025-10-12 07:00:33,436 | INFO     | chi2: 0.00010859667215884428
[2025-10-12 03:01:34] 2025-10-12 07:00:33,436 | INFO     | current chi2=0.00010859667215884428 (change=16.716924974019914 %)
[2025-10-12 03:01:34] 2025-10-12 07:00:33,436 | INFO     | left removable region: 40
[2025-10-12 03:01:34] 2025-10-12 07:00:33,437 | INFO     | sum of square deviations: 93240818.0
[2025-10-12 03:01:34] 2025-10-12 07:00:33,437 | INFO     | sum of deviations: 337770664.0
[2025-10-12 03:01:34] 2025-10-12 07:00:33,437 | INFO     | mean x: 1760250001.0
[2025-10-12 03:01:34] 2025-10-12 07:00:33,437 | INFO     | mean y: 2529030.6119402987
[2025-10-12 03:01:34] 2025-10-12 07:00:33,437 | INFO     | -- intersect: -6374086108.519193
[2025-10-12 03:01:34] 2025-10-12 07:00:33,437 | INFO     | intersect: -6374086108.519193
[2025-10-12 03:01:34] 2025-10-12 07:00:33,438 | INFO     | chi2: 6.450841361935723e-05
[2025-10-12 03:01:34] 2025-10-12 07:00:33,438 | INFO     | -- intersect: -6374086108.519193
[2025-10-12 03:01:34] 2025-10-12 07:00:33,438 | INFO     | current memory leak: 3.62 B/s (using 67 data points, chi2=0.00)
[2025-10-12 03:01:34] 2025-10-12 07:00:33,438 | INFO     | could have reported an average CPU frequency of 2085 MHz (7 samples)
[2025-10-12 03:01:34] 2025-10-12 07:00:33,438 | INFO     | ..............................
[2025-10-12 03:01:34] 2025-10-12 07:00:33,438 | INFO     | . Timing measurements:
[2025-10-12 03:01:34] 2025-10-12 07:00:33,439 | INFO     | . get job = 0 s
[2025-10-12 03:01:34] 2025-10-12 07:00:33,439 | INFO     | . initial setup = 2 s
[2025-10-12 03:01:34] 2025-10-12 07:00:33,439 | INFO     | . payload setup = 8 s
[2025-10-12 03:01:34] 2025-10-12 07:00:33,439 | INFO     | . stage-in = 0 s
[2025-10-12 03:01:34] 2025-10-12 07:00:33,439 | INFO     | . payload execution = 6879 s
[2025-10-12 03:01:34] 2025-10-12 07:00:33,439 | INFO     | . stage-out = 0 s
[2025-10-12 03:01:34] 2025-10-12 07:00:33,439 | INFO     | . log creation = 0 s
[2025-10-12 03:01:34] 2025-10-12 07:00:33,439 | INFO     | ..............................
[2025-10-12 03:01:34] 2025-10-12 07:00:33,799 | INFO     | 
[2025-10-12 03:01:34] 2025-10-12 07:00:33,799 | INFO     | job summary report
[2025-10-12 03:01:34] 2025-10-12 07:00:33,799 | INFO     | --------------------------------------------------
[2025-10-12 03:01:34] 2025-10-12 07:00:33,800 | INFO     | PanDA job id: 6839163117
[2025-10-12 03:01:34] 2025-10-12 07:00:33,800 | INFO     | task id: 46676269
[2025-10-12 03:01:34] 2025-10-12 07:00:33,800 | INFO     | errors: (none)
[2025-10-12 03:01:34] 2025-10-12 07:00:33,800 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 03:01:34] 2025-10-12 07:00:33,800 | INFO     | pilot state: finished 
[2025-10-12 03:01:34] 2025-10-12 07:00:33,800 | INFO     | transexitcode: 0
[2025-10-12 03:01:34] 2025-10-12 07:00:33,801 | INFO     | exeerrorcode: 0
[2025-10-12 03:01:34] 2025-10-12 07:00:33,801 | INFO     | exeerrordiag: 
[2025-10-12 03:01:34] 2025-10-12 07:00:33,801 | INFO     | exitcode: 0
[2025-10-12 03:01:34] 2025-10-12 07:00:33,801 | INFO     | exitmsg: OK
[2025-10-12 03:01:34] 2025-10-12 07:00:33,801 | INFO     | cpuconsumptiontime: 50517 s
[2025-10-12 03:01:34] 2025-10-12 07:00:33,801 | INFO     | nevents: 400
[2025-10-12 03:01:34] 2025-10-12 07:00:33,802 | INFO     | neventsw: 0
[2025-10-12 03:01:34] 2025-10-12 07:00:33,802 | INFO     | pid: 19675
[2025-10-12 03:01:34] 2025-10-12 07:00:33,802 | INFO     | pgrp: 19675
[2025-10-12 03:01:34] 2025-10-12 07:00:33,802 | INFO     | corecount: 8
[2025-10-12 03:01:34] 2025-10-12 07:00:33,802 | INFO     | event service: False
[2025-10-12 03:01:34] 2025-10-12 07:00:33,802 | INFO     | sizes: {0: 2348857, 6: 2349119, 11: 2349147, 6891: 2376313, 6892: 2385367, 6900: 2385505}
[2025-10-12 03:01:34] 2025-10-12 07:00:33,803 | INFO     | --------------------------------------------------
[2025-10-12 03:01:34] 2025-10-12 07:00:33,803 | INFO     | 
[2025-10-12 03:01:34] 2025-10-12 07:00:33,803 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 03:01:34] 2025-10-12 07:00:33,832 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 03:01:34] 2025-10-12 07:00:33,833 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 03:01:34] 2025-10-12 07:00:33,833 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 03:01:34] 2025-10-12 07:00:33,833 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 03:01:34] 2025-10-12 07:00:33,834 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 03:01:34] 2025-10-12 07:00:33,834 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 03:01:34] 2025-10-12 07:00:33,834 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 03:01:34] 2025-10-12 07:00:33,834 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 03:01:34] 2025-10-12 07:00:33,834 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 03:01:34] 2025-10-12 07:00:33,835 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 03:01:34] 2025-10-12 07:00:33,835 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 03:01:34] 2025-10-12 07:00:33,835 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 03:01:34] 2025-10-12 07:00:33,835 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 03:01:34] 2025-10-12 07:00:33,835 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 03:01:34] 2025-10-12 07:00:33,836 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 03:01:34] 2025-10-12 07:00:33,836 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 03:01:34] 2025-10-12 07:00:33,836 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 03:01:34] 2025-10-12 07:00:33,836 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 03:01:34] 2025-10-12 07:00:33,836 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 03:01:34] 2025-10-12 07:00:33,836 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 03:01:34] 2025-10-12 07:00:33,837 | INFO     | job 6839163117 has completed (purged errors)
[2025-10-12 03:01:34] 2025-10-12 07:00:33,837 | INFO     | overall cleanup function is called
[2025-10-12 03:01:34] 2025-10-12 07:00:34,845 | INFO     | --- collectZombieJob: --- 10, [19675]
[2025-10-12 03:01:34] 2025-10-12 07:00:34,845 | INFO     | zombie collector waiting for pid 19675
[2025-10-12 03:01:34] 2025-10-12 07:00:34,845 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 03:01:34] 2025-10-12 07:00:34,845 | INFO     | collected zombie processes
[2025-10-12 03:01:34] 2025-10-12 07:00:34,845 | INFO     | will attempt to kill all subprocesses of pid=19675
[2025-10-12 03:01:34] 2025-10-12 07:00:34,929 | INFO     | process IDs to be killed: [19675] (in reverse order)
[2025-10-12 03:01:34] 2025-10-12 07:00:34,985 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 03:01:34] 2025-10-12 07:00:34,985 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 03:01:34] 2025-10-12 07:00:34,988 | INFO     | did not find any defunct processes belonging to 19675
[2025-10-12 03:01:34] 2025-10-12 07:00:34,991 | INFO     | did not find any defunct processes belonging to 19675
[2025-10-12 03:01:34] 2025-10-12 07:00:34,991 | INFO     | ready for new job
[2025-10-12 03:01:34] 2025-10-12 07:00:34,991 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 03:01:34] 2025-10-12 07:00:34,993 | INFO     | ***************************************
[2025-10-12 03:01:34] 2025-10-12 07:00:34,993 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 03:01:34] 2025-10-12 07:00:34,993 | INFO     | ***************************************
[2025-10-12 03:01:34] 2025-10-12 07:00:34,993 | INFO     | 
[2025-10-12 03:01:34] 2025-10-12 07:00:34,993 | INFO     | architecture information:
[2025-10-12 03:01:34] 2025-10-12 07:00:34,994 | INFO     | executing command: cat /etc/os-release
[2025-10-12 03:01:34] 2025-10-12 07:00:35,012 | INFO     | cat /etc/os-release:
[2025-10-12 03:01:34] NAME="CentOS Linux"
[2025-10-12 03:01:34] VERSION="7 (Core)"
[2025-10-12 03:01:34] ID="centos"
[2025-10-12 03:01:34] ID_LIKE="rhel fedora"
[2025-10-12 03:01:34] VERSION_ID="7"
[2025-10-12 03:01:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 03:01:34] ANSI_COLOR="0;31"
[2025-10-12 03:01:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 03:01:34] HOME_URL="https://www.centos.org/"
[2025-10-12 03:01:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 03:01:34] 
[2025-10-12 03:01:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 03:01:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 03:01:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 03:01:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 03:01:34] 
[2025-10-12 03:01:34] 2025-10-12 07:00:35,012 | INFO     | ***************************************
[2025-10-12 03:01:34] 2025-10-12 07:00:35,516 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 03:01:34] 2025-10-12 07:00:35,535 | INFO     | sufficient remaining disk space (18584961024 B)
[2025-10-12 03:01:34] 2025-10-12 07:00:35,535 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 03:01:34] 2025-10-12 07:00:35,536 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 03:01:34] 2025-10-12 07:00:35,536 | INFO     | update_server=False
[2025-10-12 03:01:34] 2025-10-12 07:00:35,536 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 03:01:34] 2025-10-12 07:00:35,536 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 03:01:34] 2025-10-12 07:00:35,537 | INFO     | aborting loop
[2025-10-12 03:01:34] 2025-10-12 07:00:35,568 | INFO     | all data control threads have been joined
[2025-10-12 03:01:34] 2025-10-12 07:00:36,001 | INFO     | all payload control threads have been joined
[2025-10-12 03:01:34] 2025-10-12 07:00:36,279 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 03:01:34] 2025-10-12 07:00:36,360 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 03:01:34] 2025-10-12 07:00:36,542 | INFO     | [job] retrieve thread has finished
[2025-10-12 03:01:34] 2025-10-12 07:00:36,543 | INFO     | [job] job monitor thread has finished
[2025-10-12 03:01:34] 2025-10-12 07:00:36,574 | INFO     | [data] control thread has finished
[2025-10-12 03:01:34] 2025-10-12 07:00:36,947 | INFO     | all job control threads have been joined
[2025-10-12 03:01:34] 2025-10-12 07:00:37,007 | INFO     | [payload] control thread has finished
[2025-10-12 03:01:34] 2025-10-12 07:00:37,021 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 03:01:34] 2025-10-12 07:00:37,055 | INFO     | [payload] validate_post thread has finished
[2025-10-12 03:01:34] 2025-10-12 07:00:37,066 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 03:01:34] 2025-10-12 07:00:37,635 | INFO     | [payload] failed_post thread has finished
[2025-10-12 03:01:34] 2025-10-12 07:00:37,795 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 03:01:34] 2025-10-12 07:00:37,798 | INFO     | [data] copytool_in thread has finished
[2025-10-12 03:01:34] 2025-10-12 07:00:37,799 | INFO     | [job] validate thread has finished
[2025-10-12 03:01:34] 2025-10-12 07:00:37,952 | INFO     | [job] control thread has finished
[2025-10-12 03:01:34] 2025-10-12 07:00:38,285 | INFO     | [data] copytool_out thread has finished
[2025-10-12 03:01:34] 2025-10-12 07:00:38,532 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 03:01:34] 2025-10-12 07:00:39,535 | INFO     | [job] queue monitor thread has finished
[2025-10-12 03:01:34] 2025-10-12 07:00:40,366 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 03:01:34] 2025-10-12 07:00:46,212 | INFO     | job.realtimelogging is not enabled
[2025-10-12 03:01:34] 2025-10-12 07:00:47,217 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 03:01:34] 2025-10-12 07:01:05,608 | INFO     | PID=13242 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 03:01:34] 2025-10-12 07:01:05,609 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 03:01:34] 2025-10-12 07:01:05,609 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 03:01:34] 2025-10-12 07:01:05,609 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 03:01:34] 2025-10-12 07:01:28,196 | INFO     | [monitor] cgroup control has ended
[2025-10-12 03:01:34] 2025-10-12 07:01:29,464 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140315916810048)>', '<ExcThread(monitor, started 140314928981760)>']
[2025-10-12 03:01:34] 2025-10-12 07:01:29,722 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 03:01:34] 2025-10-12 07:01:29,723 | INFO     | [monitor] control thread has ended
[2025-10-12 03:01:34] 2025-10-12 07:01:34,465 | INFO     | all workflow threads have been joined
[2025-10-12 03:01:34] 2025-10-12 07:01:34,465 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 03:01:34] 2025-10-12 07:01:34,466 | INFO     | traces error code: 0
[2025-10-12 03:01:34] 2025-10-12 07:01:34,466 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 03:01:34] 2025-10-12 07:01:34,571 [wrapper] ==== pilot stdout END ====
[2025-10-12 03:01:34] 2025-10-12 07:01:34,576 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 03:01:34] 2025-10-12 07:01:34,580 [wrapper] pilotpid: 13242
[2025-10-12 03:01:34] 2025-10-12 07:01:34,585 [wrapper] Pilot exit status: 0
[2025-10-12 03:01:34] 2025-10-12 07:01:34,601 [wrapper] pandaids: 6839163117
[2025-10-12 03:01:34] 2025-10-12 07:01:34,650 [wrapper] cleanup supervisor_pilot 28639 13243
[2025-10-12 03:01:34] 2025-10-12 07:01:34,655 [wrapper] Test setup, not cleaning
[2025-10-12 03:01:34] 2025-10-12 07:01:34,660 [wrapper] apfmon messages muted
[2025-10-12 03:01:34] 2025-10-12 07:01:34,664 [wrapper] ==== wrapper stdout END ====
[2025-10-12 03:01:34] 2025-10-12 07:01:34,668 [wrapper] ==== wrapper stderr END ====
[2025-10-12 03:01:34]  *** Error codes and diagnostics ***
[2025-10-12 03:01:34]     "exeErrorCode": 0,
[2025-10-12 03:01:34]     "exeErrorDiag": "",
[2025-10-12 03:01:34]     "pilotErrorCode": 0,
[2025-10-12 03:01:34]     "pilotErrorDiag": "",
[2025-10-12 03:01:34]  *** Listing of results directory ***
[2025-10-12 03:01:34] total 413156
[2025-10-12 03:01:34] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 19:21 pilot3.tar.gz
[2025-10-12 03:01:34] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 19:51 queuedata.json
[2025-10-12 03:01:34] -rwx------ 1 boincer umatlas     36292 Oct 11 19:52 runpilot2-wrapper.sh
[2025-10-12 03:01:34] -rw-r--r-- 1 boincer umatlas       100 Oct 12 01:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 03:01:34] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 01:04 run_atlas
[2025-10-12 03:01:34] -rw-r--r-- 1 boincer umatlas       105 Oct 12 01:04 job.xml
[2025-10-12 03:01:34] -rw-r--r-- 2 boincer umatlas 222338019 Oct 12 01:04 EVNT.46676267._002739.pool.root.1
[2025-10-12 03:01:34] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 01:04 start_atlas.sh
[2025-10-12 03:01:34] drwxrwx--x 2 boincer umatlas      4096 Oct 12 01:04 shared
[2025-10-12 03:01:34] -rw-r--r-- 2 boincer umatlas    569679 Oct 12 01:04 input.tar.gz
[2025-10-12 03:01:34] -rw-r--r-- 1 boincer umatlas         0 Oct 12 01:04 boinc_lockfile
[2025-10-12 03:01:34] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 01:05 pandaJob.out
[2025-10-12 03:01:34] -rw------- 1 boincer umatlas    975512 Oct 12 01:05 agis_schedconf.cvmfs.json
[2025-10-12 03:01:34] -rw------- 1 boincer umatlas   1560580 Oct 12 01:05 agis_ddmendpoints.agis.ALL.json
[2025-10-12 03:01:34] drwx------ 5 boincer umatlas      4096 Oct 12 01:05 pilot3
[2025-10-12 03:01:34] -rw-r--r-- 1 boincer umatlas      5910 Oct 12 02:57 init_data.xml
[2025-10-12 03:01:34] -rw------- 1 boincer umatlas 194161493 Oct 12 02:59 HITS.46676269._067281.pool.root.1
[2025-10-12 03:01:34] -rw-r--r-- 1 boincer umatlas       530 Oct 12 03:00 boinc_task_state.xml
[2025-10-12 03:01:34] -rw------- 1 boincer umatlas      1047 Oct 12 03:00 memory_monitor_summary.json
[2025-10-12 03:01:34] -rw------- 1 boincer umatlas    352387 Oct 12 03:00 log.46676269._067281.job.log.tgz.1
[2025-10-12 03:01:34] -rw------- 1 boincer umatlas      7836 Oct 12 03:00 heartbeat.json
[2025-10-12 03:01:34] -rw------- 1 boincer umatlas        95 Oct 12 03:01 pilot_heartbeat.json
[2025-10-12 03:01:34] -rw------- 1 boincer umatlas      4818 Oct 12 03:01 pilotlog.txt
[2025-10-12 03:01:34] -rw------- 1 boincer umatlas    979517 Oct 12 03:01 log.46676269._067281.job.log.1
[2025-10-12 03:01:34] -rw------- 1 boincer umatlas       357 Oct 12 03:01 output.list
[2025-10-12 03:01:34] -rw-r--r-- 1 boincer umatlas       620 Oct 12 03:01 runtime_log
[2025-10-12 03:01:34] -rw------- 1 boincer umatlas   1351680 Oct 12 03:01 result.tar.gz
[2025-10-12 03:01:34] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 03:01 boinc_mmap_file
[2025-10-12 03:01:34] -rw-r--r-- 1 boincer umatlas      8703 Oct 12 03:01 runtime_log.err
[2025-10-12 03:01:34] -rw------- 1 boincer umatlas       659 Oct 12 03:01 flDMDmRZyR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmx0hNDm3AtOyn.diag
[2025-10-12 03:01:34] -rw-r--r-- 1 boincer umatlas        27 Oct 12 03:01 wrapper_checkpoint.txt
[2025-10-12 03:01:34] -rw-r--r-- 1 boincer umatlas     20851 Oct 12 03:01 stderr.txt
[2025-10-12 03:01:34] HITS file was successfully produced:
[2025-10-12 03:01:34] -rw------- 1 boincer umatlas 194161493 Oct 12 02:59 shared/HITS.pool.root.1
[2025-10-12 03:01:34]  *** Contents of shared directory: ***
[2025-10-12 03:01:34] total 408644
[2025-10-12 03:01:34] -rw-r--r-- 2 boincer umatlas 222338019 Oct 12 01:04 ATLAS.root_0
[2025-10-12 03:01:34] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 01:04 start_atlas.sh
[2025-10-12 03:01:34] -rw-r--r-- 2 boincer umatlas    569679 Oct 12 01:04 input.tar.gz
[2025-10-12 03:01:34] -rw------- 1 boincer umatlas 194161493 Oct 12 02:59 HITS.pool.root.1
[2025-10-12 03:01:34] -rw------- 1 boincer umatlas   1351680 Oct 12 03:01 result.tar.gz
03:01:36 (8341): run_atlas exited; CPU time 50528.073446
03:01:36 (8341): called boinc_finish(0)

</stderr_txt>
]]>

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