Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:50:31 (3406952): wrapper (7.7.26015): starting
15:50:31 (3406952): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 15:50:31] Arguments: --nthreads 4
[2025-10-12 15:50:31] Threads: 4
[2025-10-12 15:50:31] Checking for CVMFS
[2025-10-12 15:50:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 15:50:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 15:50:31] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 15:50:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 15:50:31] 2.9.2.0 1879706 4327 96484 151621 3 57 22113137 36864000 0 130560 0 3800096 99.992 146996 818 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 15:50:31] CVMFS is ok
[2025-10-12 15:50:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 15:50:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 15:50:31] Further information can be found at the LHC@home message board.
[2025-10-12 15:50:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 15:50:31] Checking for apptainer binary...
[2025-10-12 15:50:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 15:50:31] Running /usr/bin/apptainer --version
[2025-10-12 15:50:31] apptainer version 1.4.1-1.1
[2025-10-12 15:50:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 15:50:31] thA317
[2025-10-12 15:50:31] apptainer works
[2025-10-12 15:50:31] Set ATHENA_PROC_NUMBER=4
[2025-10-12 15:50:31] Set ATHENA_CORE_NUMBER=4
[2025-10-12 15:50:31] Starting ATLAS job with PandaID=6839163098
[2025-10-12 15:50:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 17:05:53]  *** The last 200 lines of the pilot log: ***
[2025-10-12 17:05:53] 2025-10-12 15:05:21,191 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 17:05:53] 2025-10-12 15:05:21,192 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 17:05:53] 2025-10-12 15:05:21,192 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 17:05:53] 2025-10-12 15:05:21,192 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 17:05:53] 2025-10-12 15:05:21,192 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 17:05:53] 2025-10-12 15:05:21,192 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 17:05:53] 2025-10-12 15:05:21,192 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 17:05:53] 2025-10-12 15:05:21,192 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 17:05:53] 2025-10-12 15:05:21,192 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 17:05:53] 2025-10-12 15:05:21,192 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 17:05:53] 2025-10-12 15:05:21,192 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 17:05:53] 2025-10-12 15:05:21,192 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 17:05:53] 2025-10-12 15:05:21,192 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 17:05:53] 2025-10-12 15:05:21,192 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 17:05:53] 2025-10-12 15:05:21,192 | INFO     | job 6839163098 has completed (purged errors)
[2025-10-12 17:05:53] 2025-10-12 15:05:21,192 | INFO     | overall cleanup function is called
[2025-10-12 17:05:53] 2025-10-12 15:05:22,199 | INFO     | --- collectZombieJob: --- 10, [3417313]
[2025-10-12 17:05:53] 2025-10-12 15:05:22,199 | INFO     | zombie collector waiting for pid 3417313
[2025-10-12 17:05:53] 2025-10-12 15:05:22,199 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 17:05:53] 2025-10-12 15:05:22,199 | INFO     | collected zombie processes
[2025-10-12 17:05:53] 2025-10-12 15:05:22,199 | INFO     | will attempt to kill all subprocesses of pid=3417313
[2025-10-12 17:05:53] 2025-10-12 15:05:22,250 | INFO     | process IDs to be killed: [3417313] (in reverse order)
[2025-10-12 17:05:53] 2025-10-12 15:05:22,288 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 17:05:53] 2025-10-12 15:05:22,288 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 17:05:53] 2025-10-12 15:05:22,290 | INFO     | did not find any defunct processes belonging to 3417313
[2025-10-12 17:05:53] 2025-10-12 15:05:22,292 | INFO     | did not find any defunct processes belonging to 3417313
[2025-10-12 17:05:53] 2025-10-12 15:05:22,292 | INFO     | ready for new job
[2025-10-12 17:05:53] 2025-10-12 15:05:22,292 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 17:05:53] 2025-10-12 15:05:22,292 | INFO     | ***************************************
[2025-10-12 17:05:53] 2025-10-12 15:05:22,292 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 17:05:53] 2025-10-12 15:05:22,293 | INFO     | ***************************************
[2025-10-12 17:05:53] 2025-10-12 15:05:22,293 | INFO     | 
[2025-10-12 17:05:53] 2025-10-12 15:05:22,293 | INFO     | architecture information:
[2025-10-12 17:05:53] 2025-10-12 15:05:22,293 | INFO     | executing command: cat /etc/os-release
[2025-10-12 17:05:53] 2025-10-12 15:05:22,308 | INFO     | cat /etc/os-release:
[2025-10-12 17:05:53] NAME="CentOS Linux"
[2025-10-12 17:05:53] VERSION="7 (Core)"
[2025-10-12 17:05:53] ID="centos"
[2025-10-12 17:05:53] ID_LIKE="rhel fedora"
[2025-10-12 17:05:53] VERSION_ID="7"
[2025-10-12 17:05:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 17:05:53] ANSI_COLOR="0;31"
[2025-10-12 17:05:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 17:05:53] HOME_URL="https://www.centos.org/"
[2025-10-12 17:05:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 17:05:53] 
[2025-10-12 17:05:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 17:05:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 17:05:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 17:05:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 17:05:53] 
[2025-10-12 17:05:53] 2025-10-12 15:05:22,309 | INFO     | ***************************************
[2025-10-12 17:05:53] 2025-10-12 15:05:22,812 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 17:05:53] 2025-10-12 15:05:22,831 | INFO     | sufficient remaining disk space (237576912896 B)
[2025-10-12 17:05:53] 2025-10-12 15:05:22,831 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 17:05:53] 2025-10-12 15:05:22,831 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 17:05:53] 2025-10-12 15:05:22,831 | INFO     | update_server=False
[2025-10-12 17:05:53] 2025-10-12 15:05:22,831 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 17:05:53] 2025-10-12 15:05:22,831 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:05:53] 2025-10-12 15:05:22,831 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:05:53] 2025-10-12 15:05:22,832 | INFO     | aborting loop
[2025-10-12 17:05:53] 2025-10-12 15:05:23,192 | INFO     | all payload control threads have been joined
[2025-10-12 17:05:53] 2025-10-12 15:05:23,328 | INFO     | all data control threads have been joined
[2025-10-12 17:05:53] 2025-10-12 15:05:23,837 | INFO     | [job] retrieve thread has finished
[2025-10-12 17:05:53] 2025-10-12 15:05:23,837 | INFO     | [job] queue monitor thread has finished
[2025-10-12 17:05:53] 2025-10-12 15:05:23,837 | INFO     | [job] job monitor thread has finished
[2025-10-12 17:05:53] 2025-10-12 15:05:24,198 | INFO     | [payload] control thread has finished
[2025-10-12 17:05:53] 2025-10-12 15:05:24,260 | INFO     | [data] copytool_in thread has finished
[2025-10-12 17:05:53] 2025-10-12 15:05:24,327 | INFO     | [payload] validate_post thread has finished
[2025-10-12 17:05:53] 2025-10-12 15:05:24,327 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 17:05:53] 2025-10-12 15:05:24,333 | INFO     | [data] control thread has finished
[2025-10-12 17:05:53] 2025-10-12 15:05:24,364 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 17:05:53] 2025-10-12 15:05:24,516 | INFO     | all job control threads have been joined
[2025-10-12 17:05:53] 2025-10-12 15:05:24,567 | INFO     | [payload] failed_post thread has finished
[2025-10-12 17:05:53] 2025-10-12 15:05:24,980 | INFO     | [job] validate thread has finished
[2025-10-12 17:05:53] 2025-10-12 15:05:25,088 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 17:05:53] 2025-10-12 15:05:25,109 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 17:05:53] 2025-10-12 15:05:25,176 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 17:05:53] 2025-10-12 15:05:25,521 | INFO     | [job] control thread has finished
[2025-10-12 17:05:53] 2025-10-12 15:05:26,334 | INFO     | [data] copytool_out thread has finished
[2025-10-12 17:05:53] 2025-10-12 15:05:28,371 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 17:05:53] 2025-10-12 15:05:33,354 | INFO     | job.realtimelogging is not enabled
[2025-10-12 17:05:53] 2025-10-12 15:05:34,359 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 17:05:53] 2025-10-12 15:05:38,276 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-10-12 17:05:53] 2025-10-12 15:05:44,724 | INFO     | [monitor] cgroup control has ended
[2025-10-12 17:05:53] 2025-10-12 15:05:45,107 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140216022558528)>', '<ExcThread(monitor, started 140215163279104)>']
[2025-10-12 17:05:53] 2025-10-12 15:05:50,132 | INFO     | all workflow threads have been joined
[2025-10-12 17:05:53] 2025-10-12 15:05:50,132 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 17:05:53] 2025-10-12 15:05:50,133 | INFO     | traces error code: 0
[2025-10-12 17:05:53] 2025-10-12 15:05:50,133 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 17:05:53] 2025-10-12 15:05:53,291 | INFO     | PID=3410737 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 17:05:53] 2025-10-12 15:05:53,292 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 17:05:53] 2025-10-12 15:05:53,292 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 17:05:53] 2025-10-12 15:05:53,292 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 17:05:53] 2025-10-12 15:05:53,292 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 17:05:53] 2025-10-12 15:05:53,292 | INFO     | [monitor] control thread has ended
[2025-10-12 17:05:53] 2025-10-12 15:05:53,371 [wrapper] ==== pilot stdout END ====
[2025-10-12 17:05:53] 2025-10-12 15:05:53,374 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 17:05:53] 2025-10-12 15:05:53,378 [wrapper] pilotpid: 3410737
[2025-10-12 17:05:53] 2025-10-12 15:05:53,382 [wrapper] Pilot exit status: 0
[2025-10-12 17:05:53] 2025-10-12 15:05:53,395 [wrapper] pandaids: 6839163098
[2025-10-12 17:05:53] 2025-10-12 15:05:53,419 [wrapper] cleanup supervisor_pilot 3433080 3410738
[2025-10-12 17:05:53] 2025-10-12 15:05:53,423 [wrapper] Test setup, not cleaning
[2025-10-12 17:05:53] 2025-10-12 15:05:53,428 [wrapper] apfmon messages muted
[2025-10-12 17:05:53] 2025-10-12 15:05:53,432 [wrapper] ==== wrapper stdout END ====
[2025-10-12 17:05:53] 2025-10-12 15:05:53,435 [wrapper] ==== wrapper stderr END ====
[2025-10-12 17:05:53]  *** Error codes and diagnostics ***
[2025-10-12 17:05:53]     "exeErrorCode": 0,
[2025-10-12 17:05:53]     "exeErrorDiag": "",
[2025-10-12 17:05:53]     "pilotErrorCode": 0,
[2025-10-12 17:05:53]     "pilotErrorDiag": "",
[2025-10-12 17:05:53]  *** Listing of results directory ***
[2025-10-12 17:05:53] total 418000
[2025-10-12 17:05:53] -rw-r--r-- 1 boinc boinc    557409 Oct 12 01:21 pilot3.tar.gz
[2025-10-12 17:05:53] -rw-r--r-- 1 boinc boinc      5112 Oct 12 01:51 queuedata.json
[2025-10-12 17:05:53] -rwx------ 1 boinc boinc     36292 Oct 12 01:52 runpilot2-wrapper.sh
[2025-10-12 17:05:53] -rw-r--r-- 1 boinc boinc       100 Oct 12 15:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 17:05:53] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 15:50 run_atlas
[2025-10-12 17:05:53] -rw-r--r-- 1 boinc boinc       105 Oct 12 15:50 job.xml
[2025-10-12 17:05:53] -rw-r--r-- 2 boinc boinc 221220177 Oct 12 15:50 EVNT.46676267._002738.pool.root.1
[2025-10-12 17:05:53] drwxrwx--x 2 boinc boinc      4096 Oct 12 15:50 shared
[2025-10-12 17:05:53] -rw-r--r-- 2 boinc boinc    569679 Oct 12 15:50 input.tar.gz
[2025-10-12 17:05:53] -rw-r--r-- 2 boinc boinc     15120 Oct 12 15:50 start_atlas.sh
[2025-10-12 17:05:53] -rw-r--r-- 1 boinc boinc         0 Oct 12 15:50 boinc_setup_complete
[2025-10-12 17:05:53] -rw-r--r-- 1 boinc boinc      6377 Oct 12 15:50 init_data.xml
[2025-10-12 17:05:53] -rw-r--r-- 1 boinc boinc         0 Oct 12 15:50 boinc_lockfile
[2025-10-12 17:05:53] -rw-r--r-- 1 boinc boinc      2550 Oct 12 15:50 pandaJob.out
[2025-10-12 17:05:53] -rw------- 1 boinc boinc    975528 Oct 12 15:50 agis_schedconf.cvmfs.json
[2025-10-12 17:05:53] -rw------- 1 boinc boinc   1560580 Oct 12 15:50 agis_ddmendpoints.agis.ALL.json
[2025-10-12 17:05:53] drwx------ 5 boinc boinc      4096 Oct 12 15:50 pilot3
[2025-10-12 17:05:53] -rw------- 1 boinc boinc 201068674 Oct 12 17:04 HITS.46676269._067262.pool.root.1
[2025-10-12 17:05:53] -rw-r--r-- 1 boinc boinc       529 Oct 12 17:04 boinc_task_state.xml
[2025-10-12 17:05:53] -rw------- 1 boinc boinc        95 Oct 12 17:05 pilot_heartbeat.json
[2025-10-12 17:05:53] -rw------- 1 boinc boinc      1022 Oct 12 17:05 memory_monitor_summary.json
[2025-10-12 17:05:53] -rw------- 1 boinc boinc    263944 Oct 12 17:05 log.46676269._067262.job.log.tgz.1
[2025-10-12 17:05:53] -rw------- 1 boinc boinc      7764 Oct 12 17:05 heartbeat.json
[2025-10-12 17:05:53] -rw-r--r-- 1 boinc boinc        27 Oct 12 17:05 wrapper_checkpoint.txt
[2025-10-12 17:05:53] -rw-r--r-- 1 boinc boinc      8192 Oct 12 17:05 boinc_mmap_file
[2025-10-12 17:05:53] -rw------- 1 boinc boinc       747 Oct 12 17:05 pilotlog.txt
[2025-10-12 17:05:53] -rw------- 1 boinc boinc    662186 Oct 12 17:05 log.46676269._067262.job.log.1
[2025-10-12 17:05:53] -rw------- 1 boinc boinc       357 Oct 12 17:05 output.list
[2025-10-12 17:05:53] -rw-r--r-- 1 boinc boinc       620 Oct 12 17:05 runtime_log
[2025-10-12 17:05:53] -rw------- 1 boinc boinc    942080 Oct 12 17:05 result.tar.gz
[2025-10-12 17:05:53] -rw-r--r-- 1 boinc boinc      8777 Oct 12 17:05 runtime_log.err
[2025-10-12 17:05:53] -rw------- 1 boinc boinc       658 Oct 12 17:05 dYNODmPZyR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmg0hNDmR7hDDo.diag
[2025-10-12 17:05:53] -rw-r--r-- 1 boinc boinc     12440 Oct 12 17:05 stderr.txt
[2025-10-12 17:05:53] HITS file was successfully produced:
[2025-10-12 17:05:53] -rw------- 1 boinc boinc 201068674 Oct 12 17:04 shared/HITS.pool.root.1
[2025-10-12 17:05:53]  *** Contents of shared directory: ***
[2025-10-12 17:05:53] total 413900
[2025-10-12 17:05:53] -rw-r--r-- 2 boinc boinc 221220177 Oct 12 15:50 ATLAS.root_0
[2025-10-12 17:05:53] -rw-r--r-- 2 boinc boinc    569679 Oct 12 15:50 input.tar.gz
[2025-10-12 17:05:53] -rw-r--r-- 2 boinc boinc     15120 Oct 12 15:50 start_atlas.sh
[2025-10-12 17:05:53] -rw------- 1 boinc boinc 201068674 Oct 12 17:04 HITS.pool.root.1
[2025-10-12 17:05:53] -rw------- 1 boinc boinc    942080 Oct 12 17:05 result.tar.gz
17:05:55 (3406952): run_atlas exited; CPU time 16877.397486
17:05:55 (3406952): called boinc_finish(0)

</stderr_txt>
]]>

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