Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:40:59 (2261502): wrapper (7.7.26015): starting
16:40:59 (2261502): wrapper: running run_atlas (--nthreads 2)
[2025-10-12 16:40:59] Arguments: --nthreads 2
[2025-10-12 16:40:59] Threads: 2
[2025-10-12 16:40:59] Checking for CVMFS
[2025-10-12 16:40:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:40:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:40:59] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:41:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:41:00] 2.9.2.0 1187580 4509 60928 151623 2 56 26880903 36864000 0 130560 0 2826417 99.989 151519 934 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 16:41:00] CVMFS is ok
[2025-10-12 16:41:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 16:41:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 16:41:00] Further information can be found at the LHC@home message board.
[2025-10-12 16:41:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:41:00] Checking for apptainer binary...
[2025-10-12 16:41:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 16:41:00] Running /usr/bin/apptainer --version
[2025-10-12 16:41:00] apptainer version 1.4.1-1.1
[2025-10-12 16:41:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:41:00] thA314b
[2025-10-12 16:41:00] apptainer works
[2025-10-12 16:41:00] Set ATHENA_PROC_NUMBER=2
[2025-10-12 16:41:00] Set ATHENA_CORE_NUMBER=2
[2025-10-12 16:41:00] Starting ATLAS job with PandaID=6839163132
[2025-10-12 16:41:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 18:47:35]  *** The last 200 lines of the pilot log: ***
[2025-10-12 18:47:35] 2025-10-12 16:47:03,939 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 18:47:35] 2025-10-12 16:47:03,939 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 18:47:35] 2025-10-12 16:47:03,939 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 18:47:35] 2025-10-12 16:47:03,939 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 18:47:35] 2025-10-12 16:47:03,939 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 18:47:35] 2025-10-12 16:47:03,939 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 18:47:35] 2025-10-12 16:47:03,939 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 18:47:35] 2025-10-12 16:47:03,939 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 18:47:35] 2025-10-12 16:47:03,939 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 18:47:35] 2025-10-12 16:47:03,939 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 18:47:35] 2025-10-12 16:47:03,939 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 18:47:35] 2025-10-12 16:47:03,939 | INFO     | job 6839163132 has completed (purged errors)
[2025-10-12 18:47:35] 2025-10-12 16:47:03,939 | INFO     | overall cleanup function is called
[2025-10-12 18:47:35] 2025-10-12 16:47:04,945 | INFO     | --- collectZombieJob: --- 10, [2271616]
[2025-10-12 18:47:35] 2025-10-12 16:47:04,946 | INFO     | zombie collector waiting for pid 2271616
[2025-10-12 18:47:35] 2025-10-12 16:47:04,946 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 18:47:35] 2025-10-12 16:47:04,946 | INFO     | collected zombie processes
[2025-10-12 18:47:35] 2025-10-12 16:47:04,946 | INFO     | will attempt to kill all subprocesses of pid=2271616
[2025-10-12 18:47:35] 2025-10-12 16:47:04,980 | INFO     | process IDs to be killed: [2271616] (in reverse order)
[2025-10-12 18:47:35] 2025-10-12 16:47:05,000 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 18:47:35] 2025-10-12 16:47:05,001 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 18:47:35] 2025-10-12 16:47:05,001 | INFO     | did not find any defunct processes belonging to 2271616
[2025-10-12 18:47:35] 2025-10-12 16:47:05,002 | INFO     | did not find any defunct processes belonging to 2271616
[2025-10-12 18:47:35] 2025-10-12 16:47:05,002 | INFO     | ready for new job
[2025-10-12 18:47:35] 2025-10-12 16:47:05,002 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 18:47:35] 2025-10-12 16:47:05,003 | INFO     | ***************************************
[2025-10-12 18:47:35] 2025-10-12 16:47:05,003 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 18:47:35] 2025-10-12 16:47:05,003 | INFO     | ***************************************
[2025-10-12 18:47:35] 2025-10-12 16:47:05,003 | INFO     | 
[2025-10-12 18:47:35] 2025-10-12 16:47:05,003 | INFO     | architecture information:
[2025-10-12 18:47:35] 2025-10-12 16:47:05,003 | INFO     | executing command: cat /etc/os-release
[2025-10-12 18:47:35] 2025-10-12 16:47:05,012 | INFO     | cat /etc/os-release:
[2025-10-12 18:47:35] NAME="CentOS Linux"
[2025-10-12 18:47:35] VERSION="7 (Core)"
[2025-10-12 18:47:35] ID="centos"
[2025-10-12 18:47:35] ID_LIKE="rhel fedora"
[2025-10-12 18:47:35] VERSION_ID="7"
[2025-10-12 18:47:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 18:47:35] ANSI_COLOR="0;31"
[2025-10-12 18:47:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 18:47:35] HOME_URL="https://www.centos.org/"
[2025-10-12 18:47:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 18:47:35] 
[2025-10-12 18:47:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 18:47:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 18:47:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 18:47:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 18:47:35] 
[2025-10-12 18:47:35] 2025-10-12 16:47:05,012 | INFO     | ***************************************
[2025-10-12 18:47:35] 2025-10-12 16:47:05,515 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 18:47:35] 2025-10-12 16:47:05,526 | INFO     | sufficient remaining disk space (497173921792 B)
[2025-10-12 18:47:35] 2025-10-12 16:47:05,526 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 18:47:35] 2025-10-12 16:47:05,526 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 18:47:35] 2025-10-12 16:47:05,526 | INFO     | update_server=False
[2025-10-12 18:47:35] 2025-10-12 16:47:05,526 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 18:47:35] 2025-10-12 16:47:05,527 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:47:35] 2025-10-12 16:47:05,529 | INFO     | all job control threads have been joined
[2025-10-12 18:47:35] 2025-10-12 16:47:05,599 | INFO     | all payload control threads have been joined
[2025-10-12 18:47:35] 2025-10-12 16:47:05,685 | INFO     | all data control threads have been joined
[2025-10-12 18:47:35] 2025-10-12 16:47:05,837 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 18:47:35] 2025-10-12 16:47:05,837 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 18:47:35] 2025-10-12 16:47:05,837 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:47:35] 2025-10-12 16:47:05,838 | INFO     | will abort loop
[2025-10-12 18:47:35] 2025-10-12 16:47:06,408 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 18:47:35] 2025-10-12 16:47:06,532 | INFO     | [job] retrieve thread has finished
[2025-10-12 18:47:35] 2025-10-12 16:47:06,533 | INFO     | [job] queue monitor thread has finished
[2025-10-12 18:47:35] 2025-10-12 16:47:06,535 | INFO     | [job] control thread has finished
[2025-10-12 18:47:35] 2025-10-12 16:47:06,605 | INFO     | [payload] control thread has finished
[2025-10-12 18:47:35] 2025-10-12 16:47:06,669 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 18:47:35] 2025-10-12 16:47:06,691 | INFO     | [data] control thread has finished
[2025-10-12 18:47:35] 2025-10-12 16:47:06,843 | INFO     | [job] job monitor thread has finished
[2025-10-12 18:47:35] 2025-10-12 16:47:07,118 | INFO     | [payload] validate_post thread has finished
[2025-10-12 18:47:35] 2025-10-12 16:47:07,740 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 18:47:35] 2025-10-12 16:47:07,762 | INFO     | [data] copytool_in thread has finished
[2025-10-12 18:47:35] 2025-10-12 16:47:07,895 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 18:47:35] 2025-10-12 16:47:07,986 | INFO     | [job] validate thread has finished
[2025-10-12 18:47:35] 2025-10-12 16:47:08,121 | INFO     | [payload] failed_post thread has finished
[2025-10-12 18:47:35] 2025-10-12 16:47:08,414 | INFO     | [data] copytool_out thread has finished
[2025-10-12 18:47:35] 2025-10-12 16:47:08,933 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 18:47:35] 2025-10-12 16:47:12,941 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 18:47:35] 2025-10-12 16:47:15,942 | INFO     | job.realtimelogging is not enabled
[2025-10-12 18:47:35] 2025-10-12 16:47:16,947 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 18:47:35] 2025-10-12 16:47:23,723 | INFO     | [monitor] cgroup control has ended
[2025-10-12 18:47:35] 2025-10-12 16:47:25,469 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139672514062144)>', '<ExcThread(monitor, started 139672151889664)>']
[2025-10-12 18:47:35] 2025-10-12 16:47:30,472 | INFO     | all workflow threads have been joined
[2025-10-12 18:47:35] 2025-10-12 16:47:30,472 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 18:47:35] 2025-10-12 16:47:30,473 | INFO     | traces error code: 0
[2025-10-12 18:47:35] 2025-10-12 16:47:30,473 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 18:47:35] 2025-10-12 16:47:35,762 | INFO     | PID=2265205 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 18:47:35] 2025-10-12 16:47:35,763 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 18:47:35] 2025-10-12 16:47:35,763 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 18:47:35] 2025-10-12 16:47:35,763 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 18:47:35] 2025-10-12 16:47:35,763 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 18:47:35] 2025-10-12 16:47:35,763 | INFO     | [monitor] control thread has ended
[2025-10-12 18:47:35] 2025-10-12 16:47:35,801 [wrapper] ==== pilot stdout END ====
[2025-10-12 18:47:35] 2025-10-12 16:47:35,804 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 18:47:35] 2025-10-12 16:47:35,806 [wrapper] pilotpid: 2265205
[2025-10-12 18:47:35] 2025-10-12 16:47:35,808 [wrapper] Pilot exit status: 0
[2025-10-12 18:47:35] 2025-10-12 16:47:35,814 [wrapper] pandaids: 6839163132
[2025-10-12 18:47:35] 2025-10-12 16:47:35,826 [wrapper] cleanup supervisor_pilot 2286227 2265206
[2025-10-12 18:47:35] 2025-10-12 16:47:35,828 [wrapper] Test setup, not cleaning
[2025-10-12 18:47:35] 2025-10-12 16:47:35,830 [wrapper] apfmon messages muted
[2025-10-12 18:47:35] 2025-10-12 16:47:35,832 [wrapper] ==== wrapper stdout END ====
[2025-10-12 18:47:35] 2025-10-12 16:47:35,834 [wrapper] ==== wrapper stderr END ====
[2025-10-12 18:47:35]  *** Error codes and diagnostics ***
[2025-10-12 18:47:35]     "exeErrorCode": 0,
[2025-10-12 18:47:35]     "exeErrorDiag": "",
[2025-10-12 18:47:35]     "pilotErrorCode": 0,
[2025-10-12 18:47:35]     "pilotErrorDiag": "",
[2025-10-12 18:47:35]  *** Listing of results directory ***
[2025-10-12 18:47:35] total 419168
[2025-10-12 18:47:35] -rw-r--r-- 1 boinc boinc    557409 Oct 12 01:21 pilot3.tar.gz
[2025-10-12 18:47:35] -rw-r--r-- 1 boinc boinc      5112 Oct 12 01:51 queuedata.json
[2025-10-12 18:47:35] -rwx------ 1 boinc boinc     36292 Oct 12 01:52 runpilot2-wrapper.sh
[2025-10-12 18:47:35] -rw-r--r-- 1 boinc boinc       100 Oct 12 16:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 18:47:35] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 16:40 run_atlas
[2025-10-12 18:47:35] -rw-r--r-- 1 boinc boinc       105 Oct 12 16:40 job.xml
[2025-10-12 18:47:35] -rw-r--r-- 2 boinc boinc 222338019 Oct 12 16:40 EVNT.46676267._002739.pool.root.1
[2025-10-12 18:47:35] -rw-r--r-- 2 boinc boinc    569683 Oct 12 16:40 input.tar.gz
[2025-10-12 18:47:35] -rw-r--r-- 2 boinc boinc     15120 Oct 12 16:40 start_atlas.sh
[2025-10-12 18:47:35] drwxrwx--x 2 boinc boinc      4096 Oct 12 16:40 shared
[2025-10-12 18:47:35] -rw-r--r-- 1 boinc boinc         0 Oct 12 16:40 boinc_setup_complete
[2025-10-12 18:47:35] -rw-r--r-- 1 boinc boinc      6207 Oct 12 16:40 init_data.xml
[2025-10-12 18:47:35] -rw-r--r-- 1 boinc boinc         0 Oct 12 16:40 boinc_lockfile
[2025-10-12 18:47:35] -rw-r--r-- 1 boinc boinc      2550 Oct 12 16:41 pandaJob.out
[2025-10-12 18:47:35] -rw------- 1 boinc boinc    975528 Oct 12 16:41 agis_schedconf.cvmfs.json
[2025-10-12 18:47:35] -rw------- 1 boinc boinc   1560580 Oct 12 16:41 agis_ddmendpoints.agis.ALL.json
[2025-10-12 18:47:35] drwx------ 5 boinc boinc      4096 Oct 12 16:41 pilot3
[2025-10-12 18:47:35] -rw-r--r-- 1 boinc boinc       529 Oct 12 18:46 boinc_task_state.xml
[2025-10-12 18:47:35] -rw------- 1 boinc boinc 200255236 Oct 12 18:46 HITS.46676269._067296.pool.root.1
[2025-10-12 18:47:35] -rw------- 1 boinc boinc        95 Oct 12 18:46 pilot_heartbeat.json
[2025-10-12 18:47:35] -rw------- 1 boinc boinc      1028 Oct 12 18:46 memory_monitor_summary.json
[2025-10-12 18:47:35] -rw------- 1 boinc boinc    287844 Oct 12 18:46 log.46676269._067296.job.log.tgz.1
[2025-10-12 18:47:35] -rw------- 1 boinc boinc      7758 Oct 12 18:47 heartbeat.json
[2025-10-12 18:47:35] -rw-r--r-- 1 boinc boinc      8192 Oct 12 18:47 boinc_mmap_file
[2025-10-12 18:47:35] -rw-r--r-- 1 boinc boinc        27 Oct 12 18:47 wrapper_checkpoint.txt
[2025-10-12 18:47:35] -rw------- 1 boinc boinc       747 Oct 12 18:47 pilotlog.txt
[2025-10-12 18:47:35] -rw------- 1 boinc boinc   1088332 Oct 12 18:47 log.46676269._067296.job.log.1
[2025-10-12 18:47:35] -rw------- 1 boinc boinc       357 Oct 12 18:47 output.list
[2025-10-12 18:47:35] -rw-r--r-- 1 boinc boinc       620 Oct 12 18:47 runtime_log
[2025-10-12 18:47:35] -rw------- 1 boinc boinc   1392640 Oct 12 18:47 result.tar.gz
[2025-10-12 18:47:35] -rw-r--r-- 1 boinc boinc      8782 Oct 12 18:47 runtime_log.err
[2025-10-12 18:47:35] -rw------- 1 boinc boinc       660 Oct 12 18:47 qWYMDmRZyR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmC1hNDmUNIdum.diag
[2025-10-12 18:47:35] -rw-r--r-- 1 boinc boinc     12258 Oct 12 18:47 stderr.txt
[2025-10-12 18:47:35] HITS file was successfully produced:
[2025-10-12 18:47:35] -rw------- 1 boinc boinc 200255236 Oct 12 18:46 shared/HITS.pool.root.1
[2025-10-12 18:47:35]  *** Contents of shared directory: ***
[2025-10-12 18:47:35] total 414632
[2025-10-12 18:47:35] -rw-r--r-- 2 boinc boinc 222338019 Oct 12 16:40 ATLAS.root_0
[2025-10-12 18:47:35] -rw-r--r-- 2 boinc boinc    569683 Oct 12 16:40 input.tar.gz
[2025-10-12 18:47:35] -rw-r--r-- 2 boinc boinc     15120 Oct 12 16:40 start_atlas.sh
[2025-10-12 18:47:35] -rw------- 1 boinc boinc 200255236 Oct 12 18:46 HITS.pool.root.1
[2025-10-12 18:47:35] -rw------- 1 boinc boinc   1392640 Oct 12 18:47 result.tar.gz
18:47:37 (2261502): run_atlas exited; CPU time 14699.576339
18:47:37 (2261502): called boinc_finish(0)

</stderr_txt>
]]>

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