Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:01:30 (2569313): wrapper (7.7.26015): starting
07:01:30 (2569313): wrapper: running run_atlas (--nthreads 2)
[2025-10-12 07:01:30] Arguments: --nthreads 2
[2025-10-12 07:01:30] Threads: 2
[2025-10-12 07:01:30] Checking for CVMFS
[2025-10-12 07:01:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 07:01:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 07:01:38] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 07:01:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 07:01:39] 2.11.0.0 2569514 0 29920 151608 3 1 2304099 4194305 0 130560 0 0 0.000 1291 1354 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-12 07:01:39] CVMFS is ok
[2025-10-12 07:01:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 07:01:39] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-12 07:01:39] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-12 07:01:39] Further information can be found at the LHC@home message board.
[2025-10-12 07:01:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 07:01:39] Checking for apptainer binary...
[2025-10-12 07:01:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 07:01:39] Running /usr/bin/apptainer --version
[2025-10-12 07:01:40] apptainer version 1.2.2-1.el8
[2025-10-12 07:01:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 07:01:41] bottom
[2025-10-12 07:01:41] apptainer works
[2025-10-12 07:01:41] Set ATHENA_PROC_NUMBER=2
[2025-10-12 07:01:41] Set ATHENA_CORE_NUMBER=2
[2025-10-12 07:01:41] Starting ATLAS job with PandaID=6838851553
[2025-10-12 07:01:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 07:09:39]  *** The last 200 lines of the pilot log: ***
[2025-10-12 07:09:39] 2025-10-12 05:09:06,442 | INFO     | found 2 cores (2 cores per socket, 1 socket) , CPU MHz: 1997.2675
[2025-10-12 07:09:39] 2025-10-12 05:09:06,443 | WARNING  | file does not exist either: /var/lib/boinc/slots/3/PanDA_Pilot-6838851553/memory_monitor_output.txt
[2025-10-12 07:09:39] 2025-10-12 05:09:06,443 | INFO     | memory summary dictionary not yet available
[2025-10-12 07:09:39] 2025-10-12 05:09:06,444 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 07:09:39] 2025-10-12 05:09:06,444 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 07:09:39] 2025-10-12 05:09:06,444 | INFO     | could have reported an average CPU frequency of 1995 MHz (4 samples)
[2025-10-12 07:09:39] 2025-10-12 05:09:06,445 | INFO     | ..............................
[2025-10-12 07:09:39] 2025-10-12 05:09:06,445 | INFO     | . Timing measurements:
[2025-10-12 07:09:39] 2025-10-12 05:09:06,445 | INFO     | . get job = 0 s
[2025-10-12 07:09:39] 2025-10-12 05:09:06,445 | INFO     | . initial setup = 3 s
[2025-10-12 07:09:39] 2025-10-12 05:09:06,445 | INFO     | . payload setup = 12 s
[2025-10-12 07:09:39] 2025-10-12 05:09:06,446 | INFO     | . stage-in = 0 s
[2025-10-12 07:09:39] 2025-10-12 05:09:06,446 | INFO     | . payload execution = 186 s
[2025-10-12 07:09:39] 2025-10-12 05:09:06,446 | INFO     | . stage-out = 0 s
[2025-10-12 07:09:39] 2025-10-12 05:09:06,446 | INFO     | . log creation = 0 s
[2025-10-12 07:09:39] 2025-10-12 05:09:06,446 | INFO     | ..............................
[2025-10-12 07:09:39] 2025-10-12 05:09:06,446 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 07:09:39] 2025-10-12 05:09:06,447 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/3/PanDA_Pilot-6838851553/pilotlog.txt
[2025-10-12 07:09:39] 2025-10-12 05:09:06,463 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-12 07:09:39] - Log from pilotlog.txt -
[2025-10-12 07:09:39] 2025-10-12 05:09:05,595 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-10-12 07:09:39] 2025-10-12 05:09:06,441 | INFO     | CPU arch script returned: x86-64-v1
[2025-10-12 07:09:39] 2025-10-12 05:09:06,442 | INFO     | found 2 cores (2 cores per socket, 1 socket) , CPU MHz: 1997.2675
[2025-10-12 07:09:39] 2025-10-12 05:09:06,443 | WARNING  | file does not exist either: /var/lib/boinc/slots/3/PanDA_Pilot-6838851553/memory_monitor_output.txt
[2025-10-12 07:09:39] 2025-10-12 05:09:06,443 | INFO     | memory summary dictionary not yet available
[2025-10-12 07:09:39] 2025-10-12 05:09:06,444 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 07:09:39] 2025-10-12 05:09:06,444 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 07:09:39] 2025-10-12 05:09:06,444 | INFO     | could have reported an average CPU frequency of 1995 MHz (4 samples)
[2025-10-12 07:09:39] 2025-10-12 05:09:06,445 | INFO     | ..............................
[2025-10-12 07:09:39] 2025-10-12 05:09:06,445 | INFO     | . Timing measurements:
[2025-10-12 07:09:39] 2025-10-12 05:09:06,445 | INFO     | . get job = 0 s
[2025-10-12 07:09:39] 2025-10-12 05:09:06,445 | INFO     | . initial setup = 3 s
[2025-10-12 07:09:39] 2025-10-12 05:09:06,445 | INFO     | . payload setup = 12 s
[2025-10-12 07:09:39] 2025-10-12 05:09:06,446 | INFO     | . stage-in = 0 s
[2025-10-12 07:09:39] 2025-10-12 05:09:06,446 | INFO     | . payload execution = 186 s
[2025-10-12 07:09:39] 2025-10-12 05:09:06,446 | INFO     | . stage-out = 0 s
[2025-10-12 07:09:39] 2025-10-12 05:09:06,446 | INFO     | . log creation = 0 s
[2025-10-12 07:09:39] 2025-10-12 05:09:06,446 | INFO     | ..............................
[2025-10-12 07:09:39] 2025-10-12 05:09:06,446 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 07:09:39] 2025-10-12 05:09:06,447 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/3/PanDA_Pilot-6838851553/pilotlog.txt
[2025-10-12 07:09:39] 2025-10-12 05:09:06,463 | WARNING  | 
[2025-10-12 07:09:39] [begin log extracts]
[2025-10-12 07:09:39] - Log from pilotlog.txt -
[2025-10-12 07:09:39] 2025-10-12 05:09:05,595 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-10-12 07:09:39] 2025-10-12 05:09:06,441 | INFO     | CPU arch script returned: x86-64-v1
[2025-10-12 07:09:39] 2025-10-12 05:09:06,442 | INFO     | found 2 cores (2 cores per socket, 1 socket) , CPU MHz: 1997.2675
[2025-10-12 07:09:39] 2025-10-12 05:09:06,443 | WARNING  | file does not exist either: /var/lib/boinc/slots/3/PanDA_Pilot-6838851553/memory_monitor_output.txt
[2025-10-12 07:09:39] 2025-10-12 05:09:06,443 | INFO     | memory summary dictionary not yet available
[2025-10-12 07:09:39] 2025-10-12 05:09:06,444 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 07:09:39] 2025-10-12 05:09:06,444 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 07:09:39] 2025-10-12 05:09:06,444 | INFO     | could have reported an average CPU frequency of 1995 MHz (4 samples)
[2025-10-12 07:09:39] 2025-10-12 05:09:06,445 | INFO     | ..............................
[2025-10-12 07:09:39] 2025-10-12 05:09:06,445 | INFO     | . Timing measurements:
[2025-10-12 07:09:39] 2025-10-12 05:09:06,445 | INFO     | . get job = 0 s
[2025-10-12 07:09:39] 2025-10-12 05:09:06,445 | INFO     | . initial setup = 3 s
[2025-10-12 07:09:39] 2025-10-12 05:09:06,445 | INFO     | . payload setup = 12 s
[2025-10-12 07:09:39] 2025-10-12 05:09:06,446 | INFO     | . stage-in = 0 s
[2025-10-12 07:09:39] 2025-10-12 05:09:06,446 | INFO     | . payload execution = 186 s
[2025-10-12 07:09:39] 2025-10-12 05:09:06,446 | INFO     | . stage-out = 0 s
[2025-10-12 07:09:39] 2025-10-12 05:09:06,446 | INFO     | . log creation = 0 s
[2025-10-12 07:09:39] 2025-10-12 05:09:06,446 | INFO     | ..............................
[2025-10-12 07:09:39] 2025-10-12 05:09:06,446 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 07:09:39] 2025-10-12 05:09:06,447 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/3/PanDA_Pilot-6838851553/pilotlog.txt
[2025-10-12 07:09:39] [end log extracts]
[2025-10-12 07:09:39] 2025-10-12 05:09:06,464 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-12 07:09:39] 2025-10-12 05:09:06,465 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2025-10-12 07:09:39] 2025-10-12 05:09:06,584 | INFO     | 
[2025-10-12 07:09:39] 2025-10-12 05:09:06,584 | INFO     | job summary report
[2025-10-12 07:09:39] 2025-10-12 05:09:06,584 | INFO     | --------------------------------------------------
[2025-10-12 07:09:39] 2025-10-12 05:09:06,584 | INFO     | PanDA job id: 6838851553
[2025-10-12 07:09:39] 2025-10-12 05:09:06,585 | INFO     | task id: 46676269
[2025-10-12 07:09:39] 2025-10-12 05:09:06,585 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-12 07:05:47,363 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-12 07:09:39] 2025-10-12 05:09:06,585 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 07:09:39] 2025-10-12 05:09:06,585 | INFO     | pilot state: failed 
[2025-10-12 07:09:39] 2025-10-12 05:09:06,585 | INFO     | transexitcode: 65
[2025-10-12 07:09:39] 2025-10-12 05:09:06,585 | INFO     | exeerrorcode: 65
[2025-10-12 07:09:39] 2025-10-12 05:09:06,585 | INFO     | exeerrordiag: EVNTtoHITS got a SIGILL signal (exit code 132)
[2025-10-12 07:09:39] 2025-10-12 05:09:06,586 | INFO     | exitcode: 65
[2025-10-12 07:09:39] 2025-10-12 05:09:06,586 | INFO     | exitmsg: EVNTtoHITS got a SIGILL signal (exit code 132)
[2025-10-12 07:09:39] 2025-10-12 05:09:06,586 | INFO     | cpuconsumptiontime: 153 s
[2025-10-12 07:09:39] 2025-10-12 05:09:06,586 | INFO     | nevents: 0
[2025-10-12 07:09:39] 2025-10-12 05:09:06,586 | INFO     | neventsw: 0
[2025-10-12 07:09:39] 2025-10-12 05:09:06,586 | INFO     | pid: 2579984
[2025-10-12 07:09:39] 2025-10-12 05:09:06,586 | INFO     | pgrp: 2579984
[2025-10-12 07:09:39] 2025-10-12 05:09:06,586 | INFO     | corecount: 2
[2025-10-12 07:09:39] 2025-10-12 05:09:06,587 | INFO     | event service: False
[2025-10-12 07:09:39] 2025-10-12 05:09:06,587 | INFO     | sizes: {0: 2348028, 1: 2348713, 2: 2348912, 11: 2349174, 13: 2349202, 263: 2372735, 266: 2377030, 267: 2377086, 393: 2377280}
[2025-10-12 07:09:39] 2025-10-12 05:09:06,587 | INFO     | --------------------------------------------------
[2025-10-12 07:09:39] 2025-10-12 05:09:06,587 | INFO     | 
[2025-10-12 07:09:39] 2025-10-12 05:09:06,587 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-10-12 07:09:39] 2025-10-12 05:09:06,610 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 07:09:39] 2025-10-12 05:09:06,610 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 07:09:39] 2025-10-12 05:09:06,610 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 07:09:39] 2025-10-12 05:09:06,610 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 07:09:39] 2025-10-12 05:09:06,611 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 07:09:39] 2025-10-12 05:09:06,611 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 07:09:39] 2025-10-12 05:09:06,611 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 07:09:39] 2025-10-12 05:09:06,611 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 07:09:39] 2025-10-12 05:09:06,611 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 07:09:39] 2025-10-12 05:09:06,611 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 07:09:39] 2025-10-12 05:09:06,611 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 07:09:39] 2025-10-12 05:09:06,612 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 07:09:39] 2025-10-12 05:09:06,612 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 07:09:39] 2025-10-12 05:09:06,612 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 07:09:39] 2025-10-12 05:09:06,612 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 07:09:39] 2025-10-12 05:09:06,612 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 07:09:39] 2025-10-12 05:09:06,612 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 07:09:39] 2025-10-12 05:09:06,612 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 07:09:39] 2025-10-12 05:09:06,613 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 07:09:39] 2025-10-12 05:09:06,613 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 07:09:39] 2025-10-12 05:09:06,613 | INFO     | job 6838851553 has completed (purged errors)
[2025-10-12 07:09:39] 2025-10-12 05:09:06,613 | INFO     | overall cleanup function is called
[2025-10-12 07:09:39] 2025-10-12 05:09:07,739 | INFO     | --- collectZombieJob: --- 10, [2579984]
[2025-10-12 07:09:39] 2025-10-12 05:09:07,739 | INFO     | zombie collector waiting for pid 2579984
[2025-10-12 07:09:39] 2025-10-12 05:09:07,740 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 07:09:39] 2025-10-12 05:09:07,740 | INFO     | collected zombie processes
[2025-10-12 07:09:39] 2025-10-12 05:09:07,740 | INFO     | will attempt to kill all subprocesses of pid=2579984
[2025-10-12 07:09:39] 2025-10-12 05:09:07,812 | INFO     | process IDs to be killed: [2579984] (in reverse order)
[2025-10-12 07:09:39] 2025-10-12 05:09:07,857 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 07:09:39] 2025-10-12 05:09:07,857 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 07:09:39] 2025-10-12 05:09:07,860 | INFO     | did not find any defunct processes belonging to 2579984
[2025-10-12 07:09:39] 2025-10-12 05:09:07,863 | INFO     | did not find any defunct processes belonging to 2579984
[2025-10-12 07:09:39] 2025-10-12 05:09:07,864 | INFO     | ready for new job
[2025-10-12 07:09:39] 2025-10-12 05:09:07,864 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 07:09:39] 2025-10-12 05:09:07,866 | INFO     | ***************************************
[2025-10-12 07:09:39] 2025-10-12 05:09:07,866 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 07:09:39] 2025-10-12 05:09:07,866 | INFO     | ***************************************
[2025-10-12 07:09:39] 2025-10-12 05:09:07,866 | INFO     | 
[2025-10-12 07:09:39] 2025-10-12 05:09:07,879 | INFO     | architecture information:
[2025-10-12 07:09:39] 2025-10-12 05:09:07,879 | INFO     | executing command: cat /etc/os-release
[2025-10-12 07:09:39] 2025-10-12 05:09:07,897 | INFO     | cat /etc/os-release:
[2025-10-12 07:09:39] NAME="CentOS Linux"
[2025-10-12 07:09:39] VERSION="7 (Core)"
[2025-10-12 07:09:39] ID="centos"
[2025-10-12 07:09:39] ID_LIKE="rhel fedora"
[2025-10-12 07:09:39] VERSION_ID="7"
[2025-10-12 07:09:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 07:09:39] ANSI_COLOR="0;31"
[2025-10-12 07:09:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 07:09:39] HOME_URL="https://www.centos.org/"
[2025-10-12 07:09:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 07:09:39] 
[2025-10-12 07:09:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 07:09:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 07:09:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 07:09:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 07:09:39] 
[2025-10-12 07:09:39] 2025-10-12 05:09:07,897 | INFO     | ***************************************
[2025-10-12 07:09:39] 2025-10-12 05:09:08,400 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-10-12 07:09:39] 2025-10-12 05:09:08,420 | INFO     | sufficient remaining disk space (215127949312 B)
[2025-10-12 07:09:39] 2025-10-12 05:09:08,420 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 07:09:39] 2025-10-12 05:09:08,421 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 07:09:39] 2025-10-12 05:09:08,421 | INFO     | update_server=False
[2025-10-12 07:09:39] 2025-10-12 05:09:08,421 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 07:09:39] 2025-10-12 05:09:08,421 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 07:09:39] 2025-10-12 05:09:08,422 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 07:09:39] 2025-10-12 05:09:08,422 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 07:09:39] 2025-10-12 05:09:08,492 | INFO     | all job control threads have been joined
[2025-10-12 07:09:39] 2025-10-12 05:09:09,103 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 07:09:39] 2025-10-12 05:09:09,104 | INFO     | aborting loop
[2025-10-12 07:09:39] 2025-10-12 05:09:09,333 | INFO     | all data control threads have been joined
[2025-10-12 07:09:39] 2025-10-12 05:09:09,427 | INFO     | [job] retrieve thread has finished
[2025-10-12 07:09:39] 2025-10-12 05:09:09,427 | INFO     | [job] queue monitor thread has finished
[2025-10-12 07:09:39] 2025-10-12 05:09:09,428 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 07:09:39] 2025-10-12 05:09:09,439 | INFO     | [data] copytool_in thread has finished
[2025-10-12 07:09:39] 2025-10-12 05:09:09,497 | INFO     | [job] control thread has finished
[2025-10-12 07:09:39] 2025-10-12 05:09:09,660 | INFO     | [payload] failed_post thread has finished
[2025-10-12 07:09:39] 2025-10-12 05:09:09,768 | INFO     | all payload control threads have been joined
[2025-10-12 07:09:39] 2025-10-12 05:09:09,988 | INFO     | [job] validate thread has finished
[2025-10-12 07:09:39] 2025-10-12 05:09:10,109 | INFO     | [job] job monitor thread has finished
[2025-10-12 07:09:39] 2025-10-12 05:09:10,182 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 07:09:39] 2025-10-12 05:09:10,332 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 07:09:39] 2025-10-12 05:09:10,338 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 07:09:39] 2025-10-12 05:09:10,339 | INFO     | [data] control thread has finished
[2025-10-12 07:09:39] 2025-10-12 05:09:10,426 | INFO     | [data] copytool_out thread has finished
[2025-10-12 07:09:39] 2025-10-12 05:09:10,566 | INFO     | [payload] validate_post thread has finished
[2025-10-12 07:09:39] 2025-10-12 05:09:10,770 | INFO     | [payload] control thread has finished
[2025-10-12 07:09:39] 2025-10-12 05:09:12,427 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 07:09:39] 2025-10-12 05:09:14,827 | INFO     | [monitor] cgroup control has ended
[2025-10-12 07:09:39] 2025-10-12 05:09:16,709 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140641528969024)>', '<ExcThread(monitor, started 140641086453504)>']
[2025-10-12 07:09:39] 2025-10-12 05:09:21,734 | INFO     | all workflow threads have been joined
[2025-10-12 07:09:39] 2025-10-12 05:09:21,735 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 07:09:39] 2025-10-12 05:09:21,735 | INFO     | traces error code: 0
[2025-10-12 07:09:39] 2025-10-12 05:09:21,735 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 07:09:39] 2025-10-12 05:09:38,452 | INFO     | PID=2573487 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 07:09:39] 2025-10-12 05:09:38,454 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 07:09:39] 2025-10-12 05:09:38,454 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 07:09:39] 2025-10-12 05:09:38,454 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 07:09:39] 2025-10-12 05:09:38,454 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 07:09:39] 2025-10-12 05:09:38,454 | INFO     | [monitor] control thread has ended
[2025-10-12 07:09:39] 2025-10-12 05:09:38,623 [wrapper] ==== pilot stdout END ====
[2025-10-12 07:09:39] 2025-10-12 05:09:38,626 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 07:09:39] 2025-10-12 05:09:38,629 [wrapper] pilotpid: 2573487
[2025-10-12 07:09:39] 2025-10-12 05:09:38,633 [wrapper] Pilot exit status: 0
[2025-10-12 07:09:39] 2025-10-12 05:09:38,723 [wrapper] pandaids: 6838851553
[2025-10-12 07:09:39] 2025-10-12 05:09:38,748 [wrapper] cleanup supervisor_pilot 2573493 2573488
[2025-10-12 07:09:39] 2025-10-12 05:09:38,752 [wrapper] Test setup, not cleaning
[2025-10-12 07:09:39] 2025-10-12 05:09:38,756 [wrapper] apfmon messages muted
[2025-10-12 07:09:39] 2025-10-12 05:09:38,760 [wrapper] ==== wrapper stdout END ====
[2025-10-12 07:09:39] 2025-10-12 05:09:38,764 [wrapper] ==== wrapper stderr END ====
[2025-10-12 07:09:39]  *** Error codes and diagnostics ***
[2025-10-12 07:09:39]     "exeErrorCode": 65,
[2025-10-12 07:09:39]     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132)",
[2025-10-12 07:09:39]     "pilotErrorCode": 1305,
[2025-10-12 07:09:39]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132)",
[2025-10-12 07:09:39]  *** Listing of results directory ***
[2025-10-12 07:09:39] total 221544
[2025-10-12 07:09:39] -rw-r--r-- 1 boinc boinc      5112 Oct 11 21:43 queuedata.json
[2025-10-12 07:09:39] -rw-r--r-- 1 boinc boinc    557409 Oct 11 21:43 pilot3.tar.gz
[2025-10-12 07:09:39] -rwx------ 1 boinc boinc     36292 Oct 11 21:45 runpilot2-wrapper.sh
[2025-10-12 07:09:39] -rw-r--r-- 1 boinc boinc       100 Oct 12 07:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 07:09:39] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 07:01 run_atlas
[2025-10-12 07:09:39] -rw-r--r-- 1 boinc boinc       105 Oct 12 07:01 job.xml
[2025-10-12 07:09:39] -rw-r--r-- 2 boinc boinc 222575004 Oct 12 07:01 EVNT.46676267._002560.pool.root.1
[2025-10-12 07:09:39] -rw-r--r-- 1 boinc boinc      5984 Oct 12 07:01 init_data.xml
[2025-10-12 07:09:39] -rw-r--r-- 2 boinc boinc     15120 Oct 12 07:01 start_atlas.sh
[2025-10-12 07:09:39] drwxrwx--x 2 boinc boinc        68 Oct 12 07:01 shared
[2025-10-12 07:09:39] -rw-r--r-- 2 boinc boinc    569681 Oct 12 07:01 input.tar.gz
[2025-10-12 07:09:39] -rw-r--r-- 1 boinc boinc         0 Oct 12 07:01 boinc_lockfile
[2025-10-12 07:09:39] -rw-r--r-- 1 boinc boinc      2549 Oct 12 07:01 pandaJob.out
[2025-10-12 07:09:39] -rw------- 1 boinc boinc    975512 Oct 12 07:02 agis_schedconf.cvmfs.json
[2025-10-12 07:09:39] -rw------- 1 boinc boinc   1560580 Oct 12 07:02 agis_ddmendpoints.agis.ALL.json
[2025-10-12 07:09:39] drwx------ 5 boinc boinc      4096 Oct 12 07:02 pilot3
[2025-10-12 07:09:39] -rw-r--r-- 1 boinc boinc       524 Oct 12 07:05 boinc_task_state.xml
[2025-10-12 07:09:39] -rw------- 1 boinc boinc     47722 Oct 12 07:06 log.46676269._063726.job.log.tgz.1
[2025-10-12 07:09:39] -rw------- 1 boinc boinc      8056 Oct 12 07:09 heartbeat.json
[2025-10-12 07:09:39] -rw-r--r-- 1 boinc boinc      8192 Oct 12 07:09 boinc_mmap_file
[2025-10-12 07:09:39] -rw-r--r-- 1 boinc boinc        23 Oct 12 07:09 wrapper_checkpoint.txt
[2025-10-12 07:09:39] -rw------- 1 boinc boinc        95 Oct 12 07:09 pilot_heartbeat.json
[2025-10-12 07:09:39] -rw------- 1 boinc boinc       747 Oct 12 07:09 pilotlog.txt
[2025-10-12 07:09:39] -rw------- 1 boinc boinc    155545 Oct 12 07:09 log.46676269._063726.job.log.1
[2025-10-12 07:09:39] -rw------- 1 boinc boinc       188 Oct 12 07:09 output.list
[2025-10-12 07:09:39] -rw-r--r-- 1 boinc boinc       620 Oct 12 07:09 runtime_log
[2025-10-12 07:09:39] -rw------- 1 boinc boinc    225280 Oct 12 07:09 result.tar.gz
[2025-10-12 07:09:39] -rw-r--r-- 1 boinc boinc      8505 Oct 12 07:09 runtime_log.err
[2025-10-12 07:09:39] -rw------- 1 boinc boinc       640 Oct 12 07:09 osnMDmkhuR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmWTSMDm8FcEWn.diag
[2025-10-12 07:09:39] -rw-r--r-- 1 boinc boinc     21942 Oct 12 07:09 stderr.txt
[2025-10-12 07:09:39] No HITS result produced
[2025-10-12 07:09:39]  *** Contents of shared directory: ***
[2025-10-12 07:09:39] total 218156
[2025-10-12 07:09:39] -rw-r--r-- 2 boinc boinc 222575004 Oct 12 07:01 ATLAS.root_0
[2025-10-12 07:09:39] -rw-r--r-- 2 boinc boinc     15120 Oct 12 07:01 start_atlas.sh
[2025-10-12 07:09:39] -rw-r--r-- 2 boinc boinc    569681 Oct 12 07:01 input.tar.gz
[2025-10-12 07:09:39] -rw------- 1 boinc boinc    225280 Oct 12 07:09 result.tar.gz
07:09:41 (2569313): run_atlas exited; CPU time 138.903376
07:09:41 (2569313): called boinc_finish(0)

</stderr_txt>
]]>

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