Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:45:33 (12541): wrapper (7.7.26015): starting
00:45:33 (12541): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 00:45:33] Arguments: --nthreads 12
[2025-10-12 00:45:33] Threads: 12
[2025-10-12 00:45:33] Checking for CVMFS
[2025-10-12 00:45:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 00:45:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 00:45:33] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 00:45:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 00:45:33] 2.11.2.0 3035 222373 97224 151608 1 59 14552218 20275200 1 130560 3 107688807 99.984 13636881 12604 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 00:45:33] CVMFS is ok
[2025-10-12 00:45:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 00:45:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 00:45:33] Further information can be found at the LHC@home message board.
[2025-10-12 00:45:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 00:45:33] Checking for apptainer binary...
[2025-10-12 00:45:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 00:45:33] Running /usr/bin/apptainer --version
[2025-10-12 00:45:33] apptainer version 1.3.2-1.el7
[2025-10-12 00:45:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 00:45:35] c-205-31.aglt2.org
[2025-10-12 00:45:35] apptainer works
[2025-10-12 00:45:35] Set ATHENA_PROC_NUMBER=12
[2025-10-12 00:45:35] Set ATHENA_CORE_NUMBER=12
[2025-10-12 00:45:35] Starting ATLAS job with PandaID=6839162300
[2025-10-12 00:45:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 01:58:03]  *** The last 200 lines of the pilot log: ***
[2025-10-12 01:58:03]  storage_token=
[2025-10-12 01:58:03]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839162300/log.46676269._066907.job.log.tgz.1
[2025-10-12 01:58:03]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/84/d3/log.46676269._066907.job.log.tgz.1
[2025-10-12 01:58:03]  workdir=None
[2025-10-12 01:58:03] ]
[2025-10-12 01:58:03] 2025-10-12 05:56:48,675 | INFO     | transferring file log.46676269._066907.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839162300/log.46676269._066907.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 01:58:03] 2025-10-12 05:56:48,675 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839162300/log.46676269._066907.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._066907.job
[2025-10-12 01:58:03] 2025-10-12 05:56:48,701 | INFO     | adding to output.list: log.46676269._066907.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/84/d3/log.46676269._066907.job.log.tg
[2025-10-12 01:58:03] 2025-10-12 05:56:48,702 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 01:58:03] 2025-10-12 05:56:48,702 | INFO     | summary of transferred files:
[2025-10-12 01:58:03] 2025-10-12 05:56:48,702 | INFO     |  -- lfn=log.46676269._066907.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 01:58:03] 2025-10-12 05:56:48,702 | INFO     | stage-out finished correctly
[2025-10-12 01:58:03] 2025-10-12 05:56:49,001 | INFO     | monitor loop #320: job 0:6839162300 is in state 'finished'
[2025-10-12 01:58:03] 2025-10-12 05:56:49,001 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 01:58:03] 2025-10-12 05:56:49,786 | INFO     | time since job start (4259s) is within the limit (172800.0s)
[2025-10-12 01:58:03] 2025-10-12 05:56:49,786 | INFO     | 4262s have passed since pilot start - server update state is 'RUNNING'
[2025-10-12 01:58:03] 2025-10-12 05:56:49,902 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 01:58:03] 2025-10-12 05:56:50,898 | INFO     | PID=16254 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 01:58:03] 2025-10-12 05:56:51,505 | INFO     | monitor loop #321: job 0:6839162300 is in state 'finished'
[2025-10-12 01:58:03] 2025-10-12 05:56:51,505 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 01:58:03] 2025-10-12 05:56:51,898 | INFO     | time since job start (4261s) is within the limit (172800.0s)
[2025-10-12 01:58:03] 2025-10-12 05:56:52,356 | INFO     | job 6839162300 has state=finished
[2025-10-12 01:58:03] 2025-10-12 05:56:52,356 | INFO     | preparing for final server update for job 6839162300 in state='finished'
[2025-10-12 01:58:03] 2025-10-12 05:56:52,357 | INFO     | this job has now completed (state=finished)
[2025-10-12 01:58:03] 2025-10-12 05:56:52,357 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 01:58:03] 2025-10-12 05:56:52,357 | INFO     | log transfer has been attempted: DONE
[2025-10-12 01:58:03] 2025-10-12 05:56:52,357 | INFO     | job 6839162300 has finished - writing final server update
[2025-10-12 01:58:03] 2025-10-12 05:56:52,358 | INFO     | total number of processed events: 400 (read)
[2025-10-12 01:58:03] 2025-10-12 05:56:52,359 | INFO     | executing command: lscpu
[2025-10-12 01:58:03] 2025-10-12 05:56:52,385 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 01:58:03] 2025-10-12 05:56:53,903 | INFO     | time since job start (4263s) is within the limit (172800.0s)
[2025-10-12 01:58:03] 2025-10-12 05:56:54,008 | INFO     | monitor loop #322: job 0:6839162300 is in state 'finished'
[2025-10-12 01:58:03] 2025-10-12 05:56:54,008 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 01:58:03] 2025-10-12 05:56:55,909 | INFO     | time since job start (4265s) is within the limit (172800.0s)
[2025-10-12 01:58:03] 2025-10-12 05:56:56,511 | INFO     | monitor loop #323: job 0:6839162300 is in state 'finished'
[2025-10-12 01:58:03] 2025-10-12 05:56:56,511 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 01:58:03] 2025-10-12 05:56:57,915 | INFO     | time since job start (4267s) is within the limit (172800.0s)
[2025-10-12 01:58:03] 2025-10-12 05:56:58,228 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 01:58:03] 2025-10-12 05:56:58,232 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-12 01:58:03] 2025-10-12 05:56:58,234 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839162300/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 01:58:03] 2025-10-12 05:56:58,235 | INFO     | extracted standard info from prmon json
[2025-10-12 01:58:03] 2025-10-12 05:56:58,235 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 01:58:03] 2025-10-12 05:56:58,236 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 01:58:03] 2025-10-12 05:56:58,236 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 01:58:03] 2025-10-12 05:56:58,236 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 01:58:03] 2025-10-12 05:56:58,238 | INFO     | fitting pss+swap vs Time
[2025-10-12 01:58:03] 2025-10-12 05:56:58,238 | INFO     | sum of square deviations: 77515872.0
[2025-10-12 01:58:03] 2025-10-12 05:56:58,238 | INFO     | sum of deviations: -7375259412.0
[2025-10-12 01:58:03] 2025-10-12 05:56:58,238 | INFO     | mean x: 1760246574.0
[2025-10-12 01:58:03] 2025-10-12 05:56:58,239 | INFO     | mean y: 2781705.8253968256
[2025-10-12 01:58:03] 2025-10-12 05:56:58,239 | INFO     | -- intersect: 167481709277.3846
[2025-10-12 01:58:03] 2025-10-12 05:56:58,239 | INFO     | intersect: 167481709277.3846
[2025-10-12 01:58:03] 2025-10-12 05:56:58,239 | INFO     | chi2: 0.05073695613132133
[2025-10-12 01:58:03] 2025-10-12 05:56:58,239 | INFO     | -- intersect: 167481709277.3846
[2025-10-12 01:58:03] 2025-10-12 05:56:58,239 | INFO     | current memory leak: -95.15 B/s (using 63 data points, chi2=0.05)
[2025-10-12 01:58:03] 2025-10-12 05:56:58,240 | INFO     | could have reported an average CPU frequency of 2054 MHz (6 samples)
[2025-10-12 01:58:03] 2025-10-12 05:56:58,240 | INFO     | ..............................
[2025-10-12 01:58:03] 2025-10-12 05:56:58,240 | INFO     | . Timing measurements:
[2025-10-12 01:58:03] 2025-10-12 05:56:58,240 | INFO     | . get job = 0 s
[2025-10-12 01:58:03] 2025-10-12 05:56:58,240 | INFO     | . initial setup = 2 s
[2025-10-12 01:58:03] 2025-10-12 05:56:58,240 | INFO     | . payload setup = 7 s
[2025-10-12 01:58:03] 2025-10-12 05:56:58,240 | INFO     | . stage-in = 0 s
[2025-10-12 01:58:03] 2025-10-12 05:56:58,241 | INFO     | . payload execution = 4229 s
[2025-10-12 01:58:03] 2025-10-12 05:56:58,241 | INFO     | . stage-out = 0 s
[2025-10-12 01:58:03] 2025-10-12 05:56:58,241 | INFO     | . log creation = 0 s
[2025-10-12 01:58:03] 2025-10-12 05:56:58,241 | INFO     | ..............................
[2025-10-12 01:58:03] 2025-10-12 05:56:58,322 | INFO     | 
[2025-10-12 01:58:03] 2025-10-12 05:56:58,322 | INFO     | job summary report
[2025-10-12 01:58:03] 2025-10-12 05:56:58,323 | INFO     | --------------------------------------------------
[2025-10-12 01:58:03] 2025-10-12 05:56:58,323 | INFO     | PanDA job id: 6839162300
[2025-10-12 01:58:03] 2025-10-12 05:56:58,323 | INFO     | task id: 46676269
[2025-10-12 01:58:03] 2025-10-12 05:56:58,323 | INFO     | errors: (none)
[2025-10-12 01:58:03] 2025-10-12 05:56:58,323 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 01:58:03] 2025-10-12 05:56:58,323 | INFO     | pilot state: finished 
[2025-10-12 01:58:03] 2025-10-12 05:56:58,324 | INFO     | transexitcode: 0
[2025-10-12 01:58:03] 2025-10-12 05:56:58,324 | INFO     | exeerrorcode: 0
[2025-10-12 01:58:03] 2025-10-12 05:56:58,324 | INFO     | exeerrordiag: 
[2025-10-12 01:58:03] 2025-10-12 05:56:58,324 | INFO     | exitcode: 0
[2025-10-12 01:58:03] 2025-10-12 05:56:58,324 | INFO     | exitmsg: OK
[2025-10-12 01:58:03] 2025-10-12 05:56:58,324 | INFO     | cpuconsumptiontime: 46384 s
[2025-10-12 01:58:03] 2025-10-12 05:56:58,324 | INFO     | nevents: 400
[2025-10-12 01:58:03] 2025-10-12 05:56:58,324 | INFO     | neventsw: 0
[2025-10-12 01:58:03] 2025-10-12 05:56:58,324 | INFO     | pid: 23231
[2025-10-12 01:58:03] 2025-10-12 05:56:58,325 | INFO     | pgrp: 23231
[2025-10-12 01:58:03] 2025-10-12 05:56:58,325 | INFO     | corecount: 12
[2025-10-12 01:58:03] 2025-10-12 05:56:58,325 | INFO     | event service: False
[2025-10-12 01:58:03] 2025-10-12 05:56:58,325 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 4239: 2375073, 4240: 2375072, 4242: 2384126, 4243: 2384310, 4251: 2384504}
[2025-10-12 01:58:03] 2025-10-12 05:56:58,325 | INFO     | --------------------------------------------------
[2025-10-12 01:58:03] 2025-10-12 05:56:58,325 | INFO     | 
[2025-10-12 01:58:03] 2025-10-12 05:56:58,325 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 01:58:03] 2025-10-12 05:56:58,350 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 01:58:03] 2025-10-12 05:56:58,351 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 01:58:03] 2025-10-12 05:56:58,351 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 01:58:03] 2025-10-12 05:56:58,351 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 01:58:03] 2025-10-12 05:56:58,351 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 01:58:03] 2025-10-12 05:56:58,351 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 01:58:03] 2025-10-12 05:56:58,351 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 01:58:03] 2025-10-12 05:56:58,352 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 01:58:03] 2025-10-12 05:56:58,352 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 01:58:03] 2025-10-12 05:56:58,352 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 01:58:03] 2025-10-12 05:56:58,352 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 01:58:03] 2025-10-12 05:56:58,352 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 01:58:03] 2025-10-12 05:56:58,352 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 01:58:03] 2025-10-12 05:56:58,353 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 01:58:03] 2025-10-12 05:56:58,353 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 01:58:03] 2025-10-12 05:56:58,353 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 01:58:03] 2025-10-12 05:56:58,353 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 01:58:03] 2025-10-12 05:56:58,353 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 01:58:03] 2025-10-12 05:56:58,353 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 01:58:03] 2025-10-12 05:56:58,354 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 01:58:03] 2025-10-12 05:56:58,354 | INFO     | job 6839162300 has completed (purged errors)
[2025-10-12 01:58:03] 2025-10-12 05:56:58,354 | INFO     | overall cleanup function is called
[2025-10-12 01:58:03] 2025-10-12 05:56:59,361 | INFO     | --- collectZombieJob: --- 10, [23231]
[2025-10-12 01:58:03] 2025-10-12 05:56:59,362 | INFO     | zombie collector waiting for pid 23231
[2025-10-12 01:58:03] 2025-10-12 05:56:59,362 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 01:58:03] 2025-10-12 05:56:59,362 | INFO     | collected zombie processes
[2025-10-12 01:58:03] 2025-10-12 05:56:59,362 | INFO     | will attempt to kill all subprocesses of pid=23231
[2025-10-12 01:58:03] 2025-10-12 05:56:59,453 | INFO     | process IDs to be killed: [23231] (in reverse order)
[2025-10-12 01:58:03] 2025-10-12 05:56:59,502 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 01:58:03] 2025-10-12 05:56:59,502 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 01:58:03] 2025-10-12 05:56:59,505 | INFO     | did not find any defunct processes belonging to 23231
[2025-10-12 01:58:03] 2025-10-12 05:56:59,508 | INFO     | did not find any defunct processes belonging to 23231
[2025-10-12 01:58:03] 2025-10-12 05:56:59,508 | INFO     | ready for new job
[2025-10-12 01:58:03] 2025-10-12 05:56:59,508 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 01:58:03] 2025-10-12 05:56:59,509 | INFO     | ***************************************
[2025-10-12 01:58:03] 2025-10-12 05:56:59,509 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 01:58:03] 2025-10-12 05:56:59,509 | INFO     | ***************************************
[2025-10-12 01:58:03] 2025-10-12 05:56:59,509 | INFO     | 
[2025-10-12 01:58:03] 2025-10-12 05:56:59,510 | INFO     | architecture information:
[2025-10-12 01:58:03] 2025-10-12 05:56:59,510 | INFO     | executing command: cat /etc/os-release
[2025-10-12 01:58:03] 2025-10-12 05:56:59,524 | INFO     | cat /etc/os-release:
[2025-10-12 01:58:03] NAME="CentOS Linux"
[2025-10-12 01:58:03] VERSION="7 (Core)"
[2025-10-12 01:58:03] ID="centos"
[2025-10-12 01:58:03] ID_LIKE="rhel fedora"
[2025-10-12 01:58:03] VERSION_ID="7"
[2025-10-12 01:58:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 01:58:03] ANSI_COLOR="0;31"
[2025-10-12 01:58:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 01:58:03] HOME_URL="https://www.centos.org/"
[2025-10-12 01:58:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 01:58:03] 
[2025-10-12 01:58:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 01:58:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 01:58:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 01:58:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 01:58:03] 
[2025-10-12 01:58:03] 2025-10-12 05:56:59,524 | INFO     | ***************************************
[2025-10-12 01:58:03] 2025-10-12 05:57:00,027 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 01:58:03] 2025-10-12 05:57:00,044 | INFO     | sufficient remaining disk space (29362225152 B)
[2025-10-12 01:58:03] 2025-10-12 05:57:00,044 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 01:58:03] 2025-10-12 05:57:00,045 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 01:58:03] 2025-10-12 05:57:00,045 | INFO     | update_server=False
[2025-10-12 01:58:03] 2025-10-12 05:57:00,045 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 01:58:03] 2025-10-12 05:57:00,045 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 01:58:03] 2025-10-12 05:57:00,046 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 01:58:03] 2025-10-12 05:57:00,046 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 01:58:03] 2025-10-12 05:57:00,046 | INFO     | aborting loop
[2025-10-12 01:58:03] 2025-10-12 05:57:00,084 | INFO     | all job control threads have been joined
[2025-10-12 01:58:03] 2025-10-12 05:57:00,322 | INFO     | all payload control threads have been joined
[2025-10-12 01:58:03] 2025-10-12 05:57:00,489 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 01:58:03] 2025-10-12 05:57:00,533 | INFO     | all data control threads have been joined
[2025-10-12 01:58:03] 2025-10-12 05:57:01,050 | INFO     | [job] retrieve thread has finished
[2025-10-12 01:58:03] 2025-10-12 05:57:01,051 | INFO     | [job] queue monitor thread has finished
[2025-10-12 01:58:03] 2025-10-12 05:57:01,052 | INFO     | [job] job monitor thread has finished
[2025-10-12 01:58:03] 2025-10-12 05:57:01,085 | INFO     | [job] control thread has finished
[2025-10-12 01:58:03] 2025-10-12 05:57:01,135 | INFO     | [data] copytool_in thread has finished
[2025-10-12 01:58:03] 2025-10-12 05:57:01,328 | INFO     | [payload] control thread has finished
[2025-10-12 01:58:03] 2025-10-12 05:57:01,538 | INFO     | [data] control thread has finished
[2025-10-12 01:58:03] 2025-10-12 05:57:01,711 | INFO     | [job] validate thread has finished
[2025-10-12 01:58:03] 2025-10-12 05:57:01,733 | INFO     | [payload] failed_post thread has finished
[2025-10-12 01:58:03] 2025-10-12 05:57:01,807 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 01:58:03] 2025-10-12 05:57:01,914 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 01:58:03] 2025-10-12 05:57:01,980 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 01:58:03] 2025-10-12 05:57:02,052 | INFO     | [data] copytool_out thread has finished
[2025-10-12 01:58:03] 2025-10-12 05:57:02,255 | INFO     | [payload] validate_post thread has finished
[2025-10-12 01:58:03] 2025-10-12 05:57:02,278 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 01:58:03] 2025-10-12 05:57:04,495 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 01:58:03] 2025-10-12 05:57:31,110 | INFO     | PID=16254 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 01:58:03] 2025-10-12 05:57:31,110 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 01:58:03] 2025-10-12 05:57:31,110 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 01:58:03] 2025-10-12 05:57:31,110 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 01:58:03] 2025-10-12 05:57:56,674 | INFO     | [monitor] cgroup control has ended
[2025-10-12 01:58:03] 2025-10-12 05:57:57,728 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140395238598464)>', '<ExcThread(monitor, started 140394327160576)>']
[2025-10-12 01:58:03] 2025-10-12 05:57:58,238 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 01:58:03] 2025-10-12 05:57:58,238 | INFO     | [monitor] control thread has ended
[2025-10-12 01:58:03] 2025-10-12 05:58:02,741 | INFO     | all workflow threads have been joined
[2025-10-12 01:58:03] 2025-10-12 05:58:02,741 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 01:58:03] 2025-10-12 05:58:02,741 | INFO     | traces error code: 0
[2025-10-12 01:58:03] 2025-10-12 05:58:02,742 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 01:58:03] 2025-10-12 05:58:02,834 [wrapper] ==== pilot stdout END ====
[2025-10-12 01:58:03] 2025-10-12 05:58:02,838 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 01:58:03] 2025-10-12 05:58:02,842 [wrapper] pilotpid: 16254
[2025-10-12 01:58:03] 2025-10-12 05:58:02,846 [wrapper] Pilot exit status: 0
[2025-10-12 01:58:03] 2025-10-12 05:58:02,861 [wrapper] pandaids: 6839162300
[2025-10-12 01:58:03] 2025-10-12 05:58:02,909 [wrapper] cleanup supervisor_pilot  2598 16255
[2025-10-12 01:58:03] 2025-10-12 05:58:02,913 [wrapper] Test setup, not cleaning
[2025-10-12 01:58:03] 2025-10-12 05:58:02,917 [wrapper] apfmon messages muted
[2025-10-12 01:58:03] 2025-10-12 05:58:02,921 [wrapper] ==== wrapper stdout END ====
[2025-10-12 01:58:03] 2025-10-12 05:58:02,925 [wrapper] ==== wrapper stderr END ====
[2025-10-12 01:58:03]  *** Error codes and diagnostics ***
[2025-10-12 01:58:03]     "exeErrorCode": 0,
[2025-10-12 01:58:03]     "exeErrorDiag": "",
[2025-10-12 01:58:03]     "pilotErrorCode": 0,
[2025-10-12 01:58:03]     "pilotErrorDiag": "",
[2025-10-12 01:58:03]  *** Listing of results directory ***
[2025-10-12 01:58:03] total 413992
[2025-10-12 01:58:03] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 19:09 pilot3.tar.gz
[2025-10-12 01:58:03] -rwx------ 1 boincer umatlas     36292 Oct 11 19:17 runpilot2-wrapper.sh
[2025-10-12 01:58:03] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 19:17 queuedata.json
[2025-10-12 01:58:03] -rw-r--r-- 1 boincer umatlas       100 Oct 12 00:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 01:58:03] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 00:45 run_atlas
[2025-10-12 01:58:03] -rw-r--r-- 1 boincer umatlas       105 Oct 12 00:45 job.xml
[2025-10-12 01:58:03] -rw-r--r-- 2 boincer umatlas 222337696 Oct 12 00:45 EVNT.46676267._002706.pool.root.1
[2025-10-12 01:58:03] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 00:45 start_atlas.sh
[2025-10-12 01:58:03] drwxrwx--x 2 boincer umatlas      4096 Oct 12 00:45 shared
[2025-10-12 01:58:03] -rw-r--r-- 2 boincer umatlas    569672 Oct 12 00:45 input.tar.gz
[2025-10-12 01:58:03] -rw-r--r-- 1 boincer umatlas         0 Oct 12 00:45 boinc_lockfile
[2025-10-12 01:58:03] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 00:45 pandaJob.out
[2025-10-12 01:58:03] -rw------- 1 boincer umatlas    975512 Oct 12 00:45 agis_schedconf.cvmfs.json
[2025-10-12 01:58:03] -rw------- 1 boincer umatlas   1560580 Oct 12 00:45 agis_ddmendpoints.agis.ALL.json
[2025-10-12 01:58:03] drwx------ 5 boincer umatlas      4096 Oct 12 00:45 pilot3
[2025-10-12 01:58:03] -rw------- 1 boincer umatlas 195690001 Oct 12 01:56 HITS.46676269._066907.pool.root.1
[2025-10-12 01:58:03] -rw------- 1 boincer umatlas      1050 Oct 12 01:56 memory_monitor_summary.json
[2025-10-12 01:58:03] -rw-r--r-- 1 boincer umatlas       529 Oct 12 01:56 boinc_task_state.xml
[2025-10-12 01:58:03] -rw------- 1 boincer umatlas        95 Oct 12 01:56 pilot_heartbeat.json
[2025-10-12 01:58:03] -rw------- 1 boincer umatlas    375836 Oct 12 01:56 log.46676269._066907.job.log.tgz.1
[2025-10-12 01:58:03] -rw------- 1 boincer umatlas      7857 Oct 12 01:56 heartbeat.json
[2025-10-12 01:58:03] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 01:57 init_data.xml
[2025-10-12 01:58:03] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 01:57 boinc_mmap_file
[2025-10-12 01:58:03] -rw-r--r-- 1 boincer umatlas        27 Oct 12 01:58 wrapper_checkpoint.txt
[2025-10-12 01:58:03] -rw------- 1 boincer umatlas      4746 Oct 12 01:58 pilotlog.txt
[2025-10-12 01:58:03] -rw------- 1 boincer umatlas    623010 Oct 12 01:58 log.46676269._066907.job.log.1
[2025-10-12 01:58:03] -rw------- 1 boincer umatlas       357 Oct 12 01:58 output.list
[2025-10-12 01:58:03] -rw-r--r-- 1 boincer umatlas       620 Oct 12 01:58 runtime_log
[2025-10-12 01:58:03] -rw------- 1 boincer umatlas   1013760 Oct 12 01:58 result.tar.gz
[2025-10-12 01:58:03] -rw------- 1 boincer umatlas       659 Oct 12 01:58 y5vNDmP1xR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmRmSMDmtOQpwm.diag
[2025-10-12 01:58:03] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 01:58 runtime_log.err
[2025-10-12 01:58:03] -rw-r--r-- 1 boincer umatlas     22303 Oct 12 01:58 stderr.txt
[2025-10-12 01:58:03] HITS file was successfully produced:
[2025-10-12 01:58:03] -rw------- 1 boincer umatlas 195690001 Oct 12 01:56 shared/HITS.pool.root.1
[2025-10-12 01:58:03]  *** Contents of shared directory: ***
[2025-10-12 01:58:03] total 409808
[2025-10-12 01:58:03] -rw-r--r-- 2 boincer umatlas 222337696 Oct 12 00:45 ATLAS.root_0
[2025-10-12 01:58:03] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 00:45 start_atlas.sh
[2025-10-12 01:58:03] -rw-r--r-- 2 boincer umatlas    569672 Oct 12 00:45 input.tar.gz
[2025-10-12 01:58:03] -rw------- 1 boincer umatlas 195690001 Oct 12 01:56 HITS.pool.root.1
[2025-10-12 01:58:03] -rw------- 1 boincer umatlas   1013760 Oct 12 01:58 result.tar.gz
01:58:04 (12541): run_atlas exited; CPU time 46362.129562
01:58:04 (12541): called boinc_finish(0)

</stderr_txt>
]]>

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