Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:52:38 (175973): wrapper (7.7.26015): starting
14:52:38 (175973): wrapper: running run_atlas (--nthreads 9)
[2025-10-12 14:52:38] Arguments: --nthreads 9
[2025-10-12 14:52:38] Threads: 9
[2025-10-12 14:52:38] Checking for CVMFS
[2025-10-12 14:52:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 14:52:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 14:52:39] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 14:52:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 14:52:39] 2.13.2.0 128817 109537 1558176 151633 0 263 32461673 39288833 15571 16776704 1 153008099 99.592 172435272 29929 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 14:52:39] CVMFS is ok
[2025-10-12 14:52:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 14:52:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 14:52:39] Further information can be found at the LHC@home message board.
[2025-10-12 14:52:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 14:52:39] Checking for apptainer binary...
[2025-10-12 14:52:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 14:52:39] Running /usr/bin/apptainer --version
[2025-10-12 14:52:39] apptainer version 1.4.3-1.el9
[2025-10-12 14:52:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 14:52:39] c-211-21.aglt2.org
[2025-10-12 14:52:39] apptainer works
[2025-10-12 14:52:39] Set ATHENA_PROC_NUMBER=9
[2025-10-12 14:52:39] Set ATHENA_CORE_NUMBER=9
[2025-10-12 14:52:39] Starting ATLAS job with PandaID=6839162239
[2025-10-12 14:52:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
03:36:14 (4070139): wrapper (7.7.26015): starting
03:36:14 (4070139): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 03:36:14] Arguments: --nthreads 8
[2025-10-13 03:36:14] Threads: 8
[2025-10-13 03:36:14] This job has been restarted, cleaning up previous attempt
[2025-10-13 03:36:14] Checking for CVMFS
[2025-10-13 03:36:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 03:36:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 03:36:15] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 03:36:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 03:36:16] 2.13.2.0 128817 110301 1557784 151653 2 292 25868759 39288832 18380 16776704 1 155062523 99.593 174543717 29903 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 03:36:16] CVMFS is ok
[2025-10-13 03:36:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 03:36:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 03:36:16] Further information can be found at the LHC@home message board.
[2025-10-13 03:36:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 03:36:16] Checking for apptainer binary...
[2025-10-13 03:36:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 03:36:16] Running /usr/bin/apptainer --version
[2025-10-13 03:36:16] apptainer version 1.4.3-1.el9
[2025-10-13 03:36:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 03:36:17] c-211-21.aglt2.org
[2025-10-13 03:36:17] apptainer works
[2025-10-13 03:36:17] Set ATHENA_PROC_NUMBER=8
[2025-10-13 03:36:17] Set ATHENA_CORE_NUMBER=8
[2025-10-13 03:36:17] Starting ATLAS job with PandaID=6839162239
[2025-10-13 03:36:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 17:58:54]  *** The last 200 lines of the pilot log: ***
[2025-10-13 17:58:54] 2025-10-13 21:58:19,968 | INFO     | sum of square deviations: 187752335890.98923
[2025-10-13 17:58:54] 2025-10-13 21:58:19,992 | INFO     | sum of deviations: 243659487293.21622
[2025-10-13 17:58:54] 2025-10-13 21:58:19,992 | INFO     | mean x: 1760366866.003546
[2025-10-13 17:58:54] 2025-10-13 21:58:19,992 | INFO     | mean y: 2520224.927895981
[2025-10-13 17:58:54] 2025-10-13 21:58:19,992 | INFO     | -- intersect: -2282032379.8792725
[2025-10-13 17:58:54] 2025-10-13 21:58:19,993 | INFO     | intersect: -2282032379.8792725
[2025-10-13 17:58:54] 2025-10-13 21:58:19,994 | INFO     | chi2: 1.9362233569570395
[2025-10-13 17:58:54] 2025-10-13 21:58:19,995 | INFO     | sum of square deviations: 184443129352.2141
[2025-10-13 17:58:54] 2025-10-13 21:58:20,017 | INFO     | sum of deviations: 240341686023.81708
[2025-10-13 17:58:54] 2025-10-13 21:58:20,018 | INFO     | mean x: 1760366713.5065398
[2025-10-13 17:58:54] 2025-10-13 21:58:20,018 | INFO     | mean y: 2520072.033293698
[2025-10-13 17:58:54] 2025-10-13 21:58:20,018 | INFO     | -- intersect: -2291355039.6626935
[2025-10-13 17:58:54] 2025-10-13 21:58:20,018 | INFO     | intersect: -2291355039.6626935
[2025-10-13 17:58:54] 2025-10-13 21:58:20,020 | INFO     | chi2: 1.9363114547503857
[2025-10-13 17:58:54] 2025-10-13 21:58:20,020 | INFO     | current chi2=1.9363114547503857 (change=-0.004549980921861714 %)
[2025-10-13 17:58:54] 2025-10-13 21:58:20,020 | INFO     | right removable region: 840
[2025-10-13 17:58:54] 2025-10-13 21:58:20,022 | INFO     | sum of square deviations: 184442869492.2142
[2025-10-13 17:58:54] 2025-10-13 21:58:20,044 | INFO     | sum of deviations: 75259653261.09158
[2025-10-13 17:58:54] 2025-10-13 21:58:20,044 | INFO     | mean x: 1760367018.5065398
[2025-10-13 17:58:54] 2025-10-13 21:58:20,045 | INFO     | mean y: 2527969.983353151
[2025-10-13 17:58:54] 2025-10-13 21:58:20,045 | INFO     | -- intersect: -715768225.417447
[2025-10-13 17:58:54] 2025-10-13 21:58:20,045 | INFO     | intersect: -715768225.417447
[2025-10-13 17:58:54] 2025-10-13 21:58:20,046 | INFO     | chi2: 0.12013536341744797
[2025-10-13 17:58:54] 2025-10-13 21:58:20,046 | INFO     | current chi2=0.12013536341744797 (change=93.79537680992279 %)
[2025-10-13 17:58:54] 2025-10-13 21:58:20,048 | INFO     | sum of square deviations: 181172520105.92343
[2025-10-13 17:58:54] 2025-10-13 21:58:20,095 | INFO     | sum of deviations: 49349261915.82296
[2025-10-13 17:58:54] 2025-10-13 21:58:20,096 | INFO     | mean x: 1760367171.0095694
[2025-10-13 17:58:54] 2025-10-13 21:58:20,096 | INFO     | mean y: 2529177.1471291864
[2025-10-13 17:58:54] 2025-10-13 21:58:20,096 | INFO     | -- intersect: -476974119.1550744
[2025-10-13 17:58:54] 2025-10-13 21:58:20,096 | INFO     | intersect: -476974119.1550744
[2025-10-13 17:58:54] 2025-10-13 21:58:20,097 | INFO     | chi2: 0.08565683010591608
[2025-10-13 17:58:54] 2025-10-13 21:58:20,098 | INFO     | current chi2=0.08565683010591608 (change=28.69973697230633 %)
[2025-10-13 17:58:54] 2025-10-13 21:58:20,099 | INFO     | sum of square deviations: 177941157283.66336
[2025-10-13 17:58:54] 2025-10-13 21:58:20,123 | INFO     | sum of deviations: 40471274003.10115
[2025-10-13 17:58:54] 2025-10-13 21:58:20,123 | INFO     | mean x: 1760367323.5102286
[2025-10-13 17:58:54] 2025-10-13 21:58:20,123 | INFO     | mean y: 2529594.046931408
[2025-10-13 17:58:54] 2025-10-13 21:58:20,124 | INFO     | -- intersect: -397851685.829285
[2025-10-13 17:58:54] 2025-10-13 21:58:20,124 | INFO     | intersect: -397851685.829285
[2025-10-13 17:58:54] 2025-10-13 21:58:20,125 | INFO     | chi2: 0.07192308561980137
[2025-10-13 17:58:54] 2025-10-13 21:58:20,125 | INFO     | current chi2=0.07192308561980137 (change=16.03344936899102 %)
[2025-10-13 17:58:54] 2025-10-13 21:58:20,125 | INFO     | left removable region: 30
[2025-10-13 17:58:54] 2025-10-13 21:58:20,128 | INFO     | sum of square deviations: 164789594630.99872
[2025-10-13 17:58:54] 2025-10-13 21:58:20,148 | INFO     | sum of deviations: 82064480552.14201
[2025-10-13 17:58:54] 2025-10-13 21:58:20,149 | INFO     | mean x: 1760367598.0012345
[2025-10-13 17:58:54] 2025-10-13 21:58:20,149 | INFO     | mean y: 2527310.858024691
[2025-10-13 17:58:54] 2025-10-13 21:58:20,149 | INFO     | -- intersect: -874127873.798993
[2025-10-13 17:58:54] 2025-10-13 21:58:20,149 | INFO     | intersect: -874127873.798993
[2025-10-13 17:58:54] 2025-10-13 21:58:20,151 | INFO     | chi2: 0.03401887849780394
[2025-10-13 17:58:54] 2025-10-13 21:58:20,151 | INFO     | -- intersect: -874127873.798993
[2025-10-13 17:58:54] 2025-10-13 21:58:20,151 | INFO     | current memory leak: 0.50 B/s (using 810 data points, chi2=0.03)
[2025-10-13 17:58:54] 2025-10-13 21:58:20,152 | INFO     | could have reported an average CPU frequency of 2900 MHz (31 samples)
[2025-10-13 17:58:54] 2025-10-13 21:58:20,153 | INFO     | ..............................
[2025-10-13 17:58:54] 2025-10-13 21:58:20,153 | INFO     | . Timing measurements:
[2025-10-13 17:58:54] 2025-10-13 21:58:20,153 | INFO     | . get job = 0 s
[2025-10-13 17:58:54] 2025-10-13 21:58:20,153 | INFO     | . initial setup = 3 s
[2025-10-13 17:58:54] 2025-10-13 21:58:20,153 | INFO     | . payload setup = 18 s
[2025-10-13 17:58:54] 2025-10-13 21:58:20,154 | INFO     | . stage-in = 0 s
[2025-10-13 17:58:54] 2025-10-13 21:58:20,154 | INFO     | . payload execution = 51619 s
[2025-10-13 17:58:54] 2025-10-13 21:58:20,154 | INFO     | . stage-out = 2 s
[2025-10-13 17:58:54] 2025-10-13 21:58:20,154 | INFO     | . log creation = 0 s
[2025-10-13 17:58:54] 2025-10-13 21:58:20,154 | INFO     | ..............................
[2025-10-13 17:58:54] 2025-10-13 21:58:20,311 | INFO     | time since job start (51691s) is within the limit (172800.0s)
[2025-10-13 17:58:54] 2025-10-13 21:58:20,504 | INFO     | 
[2025-10-13 17:58:54] 2025-10-13 21:58:20,504 | INFO     | job summary report
[2025-10-13 17:58:54] 2025-10-13 21:58:20,504 | INFO     | --------------------------------------------------
[2025-10-13 17:58:54] 2025-10-13 21:58:20,504 | INFO     | PanDA job id: 6839162239
[2025-10-13 17:58:54] 2025-10-13 21:58:20,505 | INFO     | task id: 46676269
[2025-10-13 17:58:54] 2025-10-13 21:58:20,505 | INFO     | errors: (none)
[2025-10-13 17:58:54] 2025-10-13 21:58:20,505 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 17:58:54] 2025-10-13 21:58:20,505 | INFO     | pilot state: finished 
[2025-10-13 17:58:54] 2025-10-13 21:58:20,505 | INFO     | transexitcode: 0
[2025-10-13 17:58:54] 2025-10-13 21:58:20,505 | INFO     | exeerrorcode: 0
[2025-10-13 17:58:54] 2025-10-13 21:58:20,506 | INFO     | exeerrordiag: 
[2025-10-13 17:58:54] 2025-10-13 21:58:20,506 | INFO     | exitcode: 0
[2025-10-13 17:58:54] 2025-10-13 21:58:20,506 | INFO     | exitmsg: OK
[2025-10-13 17:58:54] 2025-10-13 21:58:20,506 | INFO     | cpuconsumptiontime: 82064 s
[2025-10-13 17:58:54] 2025-10-13 21:58:20,506 | INFO     | nevents: 400
[2025-10-13 17:58:54] 2025-10-13 21:58:20,506 | INFO     | neventsw: 0
[2025-10-13 17:58:54] 2025-10-13 21:58:20,507 | INFO     | pid: 4093931
[2025-10-13 17:58:54] 2025-10-13 21:58:20,507 | INFO     | pgrp: 4093931
[2025-10-13 17:58:54] 2025-10-13 21:58:20,507 | INFO     | corecount: 8
[2025-10-13 17:58:54] 2025-10-13 21:58:20,507 | INFO     | event service: False
[2025-10-13 17:58:54] 2025-10-13 21:58:20,507 | INFO     | sizes: {0: 2348029, 1: 2348714, 2: 2348913, 3: 2348913, 13: 2348941, 19: 2349259, 24: 2349415, 51641: 2396743, 51645: 2405741, 51646: 2405797, 51652: 2405991}
[2025-10-13 17:58:54] 2025-10-13 21:58:20,507 | INFO     | --------------------------------------------------
[2025-10-13 17:58:54] 2025-10-13 21:58:20,507 | INFO     | 
[2025-10-13 17:58:54] 2025-10-13 21:58:20,508 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 17:58:54] 2025-10-13 21:58:20,528 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 17:58:54] 2025-10-13 21:58:20,529 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 17:58:54] 2025-10-13 21:58:20,529 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 17:58:54] 2025-10-13 21:58:20,529 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 17:58:54] 2025-10-13 21:58:20,529 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 17:58:54] 2025-10-13 21:58:20,530 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 17:58:54] 2025-10-13 21:58:20,530 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 17:58:54] 2025-10-13 21:58:20,530 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 17:58:54] 2025-10-13 21:58:20,530 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 17:58:54] 2025-10-13 21:58:20,530 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 17:58:54] 2025-10-13 21:58:20,530 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 17:58:54] 2025-10-13 21:58:20,531 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 17:58:54] 2025-10-13 21:58:20,531 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 17:58:54] 2025-10-13 21:58:20,531 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 17:58:54] 2025-10-13 21:58:20,531 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 17:58:54] 2025-10-13 21:58:20,531 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 17:58:54] 2025-10-13 21:58:20,531 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 17:58:54] 2025-10-13 21:58:20,532 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 17:58:54] 2025-10-13 21:58:20,532 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 17:58:54] 2025-10-13 21:58:20,532 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 17:58:54] 2025-10-13 21:58:20,532 | INFO     | job 6839162239 has completed (purged errors)
[2025-10-13 17:58:54] 2025-10-13 21:58:20,533 | INFO     | overall cleanup function is called
[2025-10-13 17:58:54] 2025-10-13 21:58:21,542 | INFO     | --- collectZombieJob: --- 10, [4093931]
[2025-10-13 17:58:54] 2025-10-13 21:58:21,542 | INFO     | zombie collector waiting for pid 4093931
[2025-10-13 17:58:54] 2025-10-13 21:58:21,542 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 17:58:54] 2025-10-13 21:58:21,542 | INFO     | collected zombie processes
[2025-10-13 17:58:54] 2025-10-13 21:58:21,542 | INFO     | will attempt to kill all subprocesses of pid=4093931
[2025-10-13 17:58:54] 2025-10-13 21:58:21,957 | INFO     | process IDs to be killed: [4093931] (in reverse order)
[2025-10-13 17:58:54] 2025-10-13 21:58:22,111 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 17:58:54] 2025-10-13 21:58:22,112 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 17:58:54] 2025-10-13 21:58:22,138 | INFO     | did not find any defunct processes belonging to 4093931
[2025-10-13 17:58:54] 2025-10-13 21:58:22,157 | INFO     | did not find any defunct processes belonging to 4093931
[2025-10-13 17:58:54] 2025-10-13 21:58:22,157 | INFO     | ready for new job
[2025-10-13 17:58:54] 2025-10-13 21:58:22,158 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 17:58:54] 2025-10-13 21:58:22,162 | INFO     | ***************************************
[2025-10-13 17:58:54] 2025-10-13 21:58:22,162 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 17:58:54] 2025-10-13 21:58:22,163 | INFO     | ***************************************
[2025-10-13 17:58:54] 2025-10-13 21:58:22,163 | INFO     | 
[2025-10-13 17:58:54] 2025-10-13 21:58:22,165 | INFO     | architecture information:
[2025-10-13 17:58:54] 2025-10-13 21:58:22,165 | INFO     | executing command: cat /etc/os-release
[2025-10-13 17:58:54] 2025-10-13 21:58:22,184 | INFO     | cat /etc/os-release:
[2025-10-13 17:58:54] NAME="CentOS Linux"
[2025-10-13 17:58:54] VERSION="7 (Core)"
[2025-10-13 17:58:54] ID="centos"
[2025-10-13 17:58:54] ID_LIKE="rhel fedora"
[2025-10-13 17:58:54] VERSION_ID="7"
[2025-10-13 17:58:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 17:58:54] ANSI_COLOR="0;31"
[2025-10-13 17:58:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 17:58:54] HOME_URL="https://www.centos.org/"
[2025-10-13 17:58:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 17:58:54] 
[2025-10-13 17:58:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 17:58:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 17:58:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 17:58:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 17:58:54] 
[2025-10-13 17:58:54] 2025-10-13 21:58:22,185 | INFO     | ***************************************
[2025-10-13 17:58:54] 2025-10-13 21:58:22,688 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 17:58:54] 2025-10-13 21:58:22,704 | INFO     | sufficient remaining disk space (52015661056 B)
[2025-10-13 17:58:54] 2025-10-13 21:58:22,705 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 17:58:54] 2025-10-13 21:58:22,705 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 17:58:54] 2025-10-13 21:58:22,705 | INFO     | update_server=False
[2025-10-13 17:58:54] 2025-10-13 21:58:22,706 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 17:58:54] 2025-10-13 21:58:22,806 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 17:58:54] 2025-10-13 21:58:22,806 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 17:58:54] 2025-10-13 21:58:22,806 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:58:54] 2025-10-13 21:58:22,806 | INFO     | will abort loop
[2025-10-13 17:58:54] 2025-10-13 21:58:22,870 | INFO     | all job control threads have been joined
[2025-10-13 17:58:54] 2025-10-13 21:58:23,519 | INFO     | all payload control threads have been joined
[2025-10-13 17:58:54] 2025-10-13 21:58:23,712 | INFO     | [job] retrieve thread has finished
[2025-10-13 17:58:54] 2025-10-13 21:58:23,752 | INFO     | all data control threads have been joined
[2025-10-13 17:58:54] 2025-10-13 21:58:23,803 | INFO     | [data] copytool_in thread has finished
[2025-10-13 17:58:54] 2025-10-13 21:58:23,813 | INFO     | [job] job monitor thread has finished
[2025-10-13 17:58:54] 2025-10-13 21:58:23,814 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 17:58:54] 2025-10-13 21:58:23,827 | INFO     | [job] validate thread has finished
[2025-10-13 17:58:54] 2025-10-13 21:58:23,827 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 17:58:54] 2025-10-13 21:58:23,874 | INFO     | [job] control thread has finished
[2025-10-13 17:58:54] 2025-10-13 21:58:23,878 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 17:58:54] 2025-10-13 21:58:24,057 | INFO     | [payload] failed_post thread has finished
[2025-10-13 17:58:54] 2025-10-13 21:58:24,524 | INFO     | [payload] control thread has finished
[2025-10-13 17:58:54] 2025-10-13 21:58:24,758 | INFO     | [data] control thread has finished
[2025-10-13 17:58:54] 2025-10-13 21:58:24,966 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 17:58:54] 2025-10-13 21:58:25,133 | INFO     | [payload] validate_post thread has finished
[2025-10-13 17:58:54] 2025-10-13 21:58:25,295 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 17:58:54] 2025-10-13 21:58:25,316 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:58:54] 2025-10-13 21:58:25,894 | INFO     | [data] copytool_out thread has finished
[2025-10-13 17:58:54] 2025-10-13 21:58:26,321 | INFO     | [job] queue monitor thread has finished
[2025-10-13 17:58:54] 2025-10-13 21:58:28,905 | INFO     | [monitor] cgroup control has ended
[2025-10-13 17:58:54] 2025-10-13 21:58:29,304 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 17:58:54] 2025-10-13 21:58:33,441 | INFO     | job.realtimelogging is not enabled
[2025-10-13 17:58:54] 2025-10-13 21:58:34,447 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 17:58:54] 2025-10-13 21:58:36,463 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140392439052096)>', '<ExcThread(monitor, started 140392167085824)>']
[2025-10-13 17:58:54] 2025-10-13 21:58:41,488 | INFO     | all workflow threads have been joined
[2025-10-13 17:58:54] 2025-10-13 21:58:41,488 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 17:58:54] 2025-10-13 21:58:41,488 | INFO     | traces error code: 0
[2025-10-13 17:58:54] 2025-10-13 21:58:41,489 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 17:58:54] 2025-10-13 21:58:54,144 | INFO     | PID=4079136 has CPU usage=7.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 17:58:54] 2025-10-13 21:58:54,144 | INFO     | .. there are 26 such processes running
[2025-10-13 17:58:54] 2025-10-13 21:58:54,145 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 17:58:54] 2025-10-13 21:58:54,145 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 17:58:54] 2025-10-13 21:58:54,145 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 17:58:54] 2025-10-13 21:58:54,145 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 17:58:54] 2025-10-13 21:58:54,145 | INFO     | [monitor] control thread has ended
[2025-10-13 17:58:54] 2025-10-13 21:58:54,291 [wrapper] ==== pilot stdout END ====
[2025-10-13 17:58:54] 2025-10-13 21:58:54,294 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 17:58:54] 2025-10-13 21:58:54,297 [wrapper] pilotpid: 4079136
[2025-10-13 17:58:54] 2025-10-13 21:58:54,300 [wrapper] Pilot exit status: 0
[2025-10-13 17:58:54] 2025-10-13 21:58:54,342 [wrapper] pandaids: 6839162239 6839162239
[2025-10-13 17:58:54] 2025-10-13 21:58:54,440 [wrapper] cleanup supervisor_pilot 3764299 4079137
[2025-10-13 17:58:54] 2025-10-13 21:58:54,443 [wrapper] Test setup, not cleaning
[2025-10-13 17:58:54] 2025-10-13 21:58:54,446 [wrapper] apfmon messages muted
[2025-10-13 17:58:54] 2025-10-13 21:58:54,449 [wrapper] ==== wrapper stdout END ====
[2025-10-13 17:58:54] 2025-10-13 21:58:54,453 [wrapper] ==== wrapper stderr END ====
[2025-10-13 17:58:54]  *** Error codes and diagnostics ***
[2025-10-13 17:58:54]     "exeErrorCode": 0,
[2025-10-13 17:58:54]     "exeErrorDiag": "",
[2025-10-13 17:58:54]     "pilotErrorCode": 0,
[2025-10-13 17:58:54]     "pilotErrorDiag": "",
[2025-10-13 17:58:54]  *** Listing of results directory ***
[2025-10-13 17:58:54] total 643800
[2025-10-13 17:58:54] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-13 17:58:54] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 19:09 pilot3.tar.gz
[2025-10-13 17:58:54] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 19:13 queuedata.json
[2025-10-13 17:58:54] -rwx------. 1 boincer umatlas     36292 Oct 11 19:13 runpilot2-wrapper.sh
[2025-10-13 17:58:54] -rw-r--r--. 1 boincer umatlas       100 Oct 12 14:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 17:58:54] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 14:52 run_atlas
[2025-10-13 17:58:54] -rw-r--r--. 1 boincer umatlas       105 Oct 12 14:52 job.xml
[2025-10-13 17:58:54] -rw-r--r--. 3 boincer umatlas 223779744 Oct 12 14:52 EVNT.46676267._002698.pool.root.1
[2025-10-13 17:58:54] -rw-r--r--. 3 boincer umatlas 223779744 Oct 12 14:52 ATLAS.root_0
[2025-10-13 17:58:54] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 14:52 start_atlas.sh
[2025-10-13 17:58:54] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 14:52 shared
[2025-10-13 17:58:54] -rw-r--r--. 2 boincer umatlas    569677 Oct 12 14:52 input.tar.gz
[2025-10-13 17:58:54] -rw-r--r--. 1 boincer umatlas         0 Oct 12 14:52 boinc_lockfile
[2025-10-13 17:58:54] -rw-r--r--. 1 boincer umatlas      2550 Oct 13 03:36 pandaJob.out
[2025-10-13 17:58:54] -rw-------. 1 boincer umatlas    972849 Oct 13 03:36 agis_schedconf.cvmfs.json
[2025-10-13 17:58:54] -rw-r--r--. 1 boincer umatlas      6525 Oct 13 17:56 init_data.xml
[2025-10-13 17:58:54] -rw-------. 1 boincer umatlas 194173897 Oct 13 17:57 HITS.46676269._066846.pool.root.1
[2025-10-13 17:58:54] -rw-r--r--. 1 boincer umatlas       532 Oct 13 17:57 boinc_task_state.xml
[2025-10-13 17:58:54] -rw-------. 1 boincer umatlas        97 Oct 13 17:58 pilot_heartbeat.json
[2025-10-13 17:58:54] -rw-------. 1 boincer umatlas      1045 Oct 13 17:58 memory_monitor_summary.json
[2025-10-13 17:58:54] -rw-------. 1 boincer umatlas   1560580 Oct 13 17:58 agis_ddmendpoints.agis.ALL.json
[2025-10-13 17:58:54] -rw-------. 1 boincer umatlas    910639 Oct 13 17:58 log.46676269._066846.job.log.tgz.1
[2025-10-13 17:58:54] -rw-------. 1 boincer umatlas      7822 Oct 13 17:58 heartbeat.json
[2025-10-13 17:58:54] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 17:58 boinc_mmap_file
[2025-10-13 17:58:54] -rw-r--r--. 1 boincer umatlas        29 Oct 13 17:58 wrapper_checkpoint.txt
[2025-10-13 17:58:54] -rw-------. 1 boincer umatlas       823 Oct 13 17:58 pilotlog.txt
[2025-10-13 17:58:54] -rw-------. 1 boincer umatlas   5901640 Oct 13 17:58 log.46676269._066846.job.log.1
[2025-10-13 17:58:54] -rw-------. 1 boincer umatlas       357 Oct 13 17:58 output.list
[2025-10-13 17:58:54] -rw-r--r--. 1 boincer umatlas       620 Oct 13 17:58 runtime_log
[2025-10-13 17:58:54] -rw-------. 1 boincer umatlas   6830080 Oct 13 17:58 result.tar.gz
[2025-10-13 17:58:54] -rw-r--r--. 1 boincer umatlas      8789 Oct 13 17:58 runtime_log.err
[2025-10-13 17:58:54] -rw-------. 1 boincer umatlas       785 Oct 13 17:58 mMQNDmLxxR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZwhNDmEdZeEo.diag
[2025-10-13 17:58:54] -rw-r--r--. 1 boincer umatlas     23260 Oct 13 17:58 stderr.txt
[2025-10-13 17:58:54] HITS file was successfully produced:
[2025-10-13 17:58:54] -rw-------. 1 boincer umatlas 194173897 Oct 13 17:57 shared/HITS.pool.root.1
[2025-10-13 17:58:54]  *** Contents of shared directory: ***
[2025-10-13 17:58:54] total 415412
[2025-10-13 17:58:54] -rw-r--r--. 3 boincer umatlas 223779744 Oct 12 14:52 ATLAS.root_0
[2025-10-13 17:58:54] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 14:52 start_atlas.sh
[2025-10-13 17:58:54] -rw-r--r--. 2 boincer umatlas    569677 Oct 12 14:52 input.tar.gz
[2025-10-13 17:58:54] -rw-------. 1 boincer umatlas 194173897 Oct 13 17:57 HITS.pool.root.1
[2025-10-13 17:58:54] -rw-------. 1 boincer umatlas   6830080 Oct 13 17:58 result.tar.gz
17:58:56 (4070139): run_atlas exited; CPU time 84295.041665
17:58:56 (4070139): called boinc_finish(0)

</stderr_txt>
]]>

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