Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:22:52 (31409): wrapper (7.7.26015): starting
00:22:52 (31409): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 00:22:52] Arguments: --nthreads 8
[2025-10-12 00:22:52] Threads: 8
[2025-10-12 00:22:52] Checking for CVMFS
[2025-10-12 00:22:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 00:22:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 00:22:52] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 00:22:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 00:22:53] 2.11.2.0 1598 215717 124484 151608 3 57 20053717 20275201 917 130560 1 220364501 99.992 11688365 11164 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 00:22:53] CVMFS is ok
[2025-10-12 00:22:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 00:22:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 00:22:53] Further information can be found at the LHC@home message board.
[2025-10-12 00:22:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 00:22:53] Checking for apptainer binary...
[2025-10-12 00:22:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 00:22:53] Running /usr/bin/apptainer --version
[2025-10-12 00:22:53] apptainer version 1.3.2-1.el7
[2025-10-12 00:22:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 00:22:53] c-205-36.aglt2.org
[2025-10-12 00:22:53] apptainer works
[2025-10-12 00:22:53] Set ATHENA_PROC_NUMBER=8
[2025-10-12 00:22:53] Set ATHENA_CORE_NUMBER=8
[2025-10-12 00:22:53] Starting ATLAS job with PandaID=6839242792
[2025-10-12 00:22:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 01:30:17]  *** The last 200 lines of the pilot log: ***
[2025-10-12 01:30:17]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6839242792/log.46676269._069202.job.log.tgz.1
[2025-10-12 01:30:17]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c5/6b/log.46676269._069202.job.log.tgz.1
[2025-10-12 01:30:17]  workdir=None
[2025-10-12 01:30:17] ]
[2025-10-12 01:30:17] 2025-10-12 05:29:26,315 | INFO     | transferring file log.46676269._069202.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6839242792/log.46676269._069202.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 01:30:17] 2025-10-12 05:29:26,315 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6839242792/log.46676269._069202.job.log.tgz.1 /tmp/boinchome/slots/1/log.46676269._069202.job
[2025-10-12 01:30:17] 2025-10-12 05:29:26,337 | INFO     | adding to output.list: log.46676269._069202.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c5/6b/log.46676269._069202.job.log.tg
[2025-10-12 01:30:17] 2025-10-12 05:29:26,337 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 01:30:17] 2025-10-12 05:29:26,338 | INFO     | summary of transferred files:
[2025-10-12 01:30:17] 2025-10-12 05:29:26,338 | INFO     |  -- lfn=log.46676269._069202.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 01:30:17] 2025-10-12 05:29:26,338 | INFO     | stage-out finished correctly
[2025-10-12 01:30:17] 2025-10-12 05:29:27,094 | INFO     | time since job start (3982s) is within the limit (172800.0s)
[2025-10-12 01:30:17] 2025-10-12 05:29:28,225 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 01:30:17] 2025-10-12 05:29:28,655 | INFO     | monitor loop #295: job 0:6839242792 is in state 'finished'
[2025-10-12 01:30:17] 2025-10-12 05:29:28,655 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 01:30:17] 2025-10-12 05:29:29,100 | INFO     | time since job start (3984s) is within the limit (172800.0s)
[2025-10-12 01:30:17] 2025-10-12 05:29:29,695 | INFO     | job 6839242792 has state=finished
[2025-10-12 01:30:17] 2025-10-12 05:29:29,696 | INFO     | preparing for final server update for job 6839242792 in state='finished'
[2025-10-12 01:30:17] 2025-10-12 05:29:29,697 | INFO     | this job has now completed (state=finished)
[2025-10-12 01:30:17] 2025-10-12 05:29:29,697 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 01:30:17] 2025-10-12 05:29:29,697 | INFO     | log transfer has been attempted: DONE
[2025-10-12 01:30:17] 2025-10-12 05:29:29,697 | INFO     | job 6839242792 has finished - writing final server update
[2025-10-12 01:30:17] 2025-10-12 05:29:29,697 | INFO     | total number of processed events: 400 (read)
[2025-10-12 01:30:17] 2025-10-12 05:29:29,698 | INFO     | executing command: lscpu
[2025-10-12 01:30:17] 2025-10-12 05:29:29,731 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 01:30:17] 2025-10-12 05:29:31,105 | INFO     | time since job start (3986s) is within the limit (172800.0s)
[2025-10-12 01:30:17] 2025-10-12 05:29:31,157 | INFO     | monitor loop #296: job 0:6839242792 is in state 'finished'
[2025-10-12 01:30:17] 2025-10-12 05:29:31,158 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 01:30:17] 2025-10-12 05:29:33,106 | INFO     | time since job start (3988s) is within the limit (172800.0s)
[2025-10-12 01:30:17] 2025-10-12 05:29:33,660 | INFO     | monitor loop #297: job 0:6839242792 is in state 'finished'
[2025-10-12 01:30:17] 2025-10-12 05:29:33,660 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 01:30:17] 2025-10-12 05:29:33,921 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 01:30:17] 2025-10-12 05:29:33,926 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 1980.0930000000003
[2025-10-12 01:30:17] 2025-10-12 05:29:33,929 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6839242792/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 01:30:17] 2025-10-12 05:29:33,930 | INFO     | extracted standard info from prmon json
[2025-10-12 01:30:17] 2025-10-12 05:29:33,930 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 01:30:17] 2025-10-12 05:29:33,930 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 01:30:17] 2025-10-12 05:29:33,931 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 01:30:17] 2025-10-12 05:29:33,931 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 01:30:17] 2025-10-12 05:29:33,933 | INFO     | fitting pss+swap vs Time
[2025-10-12 01:30:17] 2025-10-12 05:29:33,933 | INFO     | sum of square deviations: 60482994.5
[2025-10-12 01:30:17] 2025-10-12 05:29:33,934 | INFO     | sum of deviations: -5153852271.500001
[2025-10-12 01:30:17] 2025-10-12 05:29:33,934 | INFO     | mean x: 1760245054.5
[2025-10-12 01:30:17] 2025-10-12 05:29:33,934 | INFO     | mean y: 2728156.224137931
[2025-10-12 01:30:17] 2025-10-12 05:29:33,934 | INFO     | -- intersect: 149996012178.0903
[2025-10-12 01:30:17] 2025-10-12 05:29:33,934 | INFO     | intersect: 149996012178.0903
[2025-10-12 01:30:17] 2025-10-12 05:29:33,934 | INFO     | chi2: 0.04687239460279203
[2025-10-12 01:30:17] 2025-10-12 05:29:33,935 | INFO     | -- intersect: 149996012178.0903
[2025-10-12 01:30:17] 2025-10-12 05:29:33,935 | INFO     | current memory leak: -85.21 B/s (using 58 data points, chi2=0.05)
[2025-10-12 01:30:17] 2025-10-12 05:29:33,935 | INFO     | could have reported an average CPU frequency of 2249 MHz (6 samples)
[2025-10-12 01:30:17] 2025-10-12 05:29:33,935 | INFO     | ..............................
[2025-10-12 01:30:17] 2025-10-12 05:29:33,935 | INFO     | . Timing measurements:
[2025-10-12 01:30:17] 2025-10-12 05:29:33,935 | INFO     | . get job = 0 s
[2025-10-12 01:30:17] 2025-10-12 05:29:33,936 | INFO     | . initial setup = 2 s
[2025-10-12 01:30:17] 2025-10-12 05:29:33,936 | INFO     | . payload setup = 6 s
[2025-10-12 01:30:17] 2025-10-12 05:29:33,936 | INFO     | . stage-in = 0 s
[2025-10-12 01:30:17] 2025-10-12 05:29:33,936 | INFO     | . payload execution = 3953 s
[2025-10-12 01:30:17] 2025-10-12 05:29:33,936 | INFO     | . stage-out = 0 s
[2025-10-12 01:30:17] 2025-10-12 05:29:33,936 | INFO     | . log creation = 0 s
[2025-10-12 01:30:17] 2025-10-12 05:29:33,936 | INFO     | ..............................
[2025-10-12 01:30:17] 2025-10-12 05:29:34,016 | INFO     | 
[2025-10-12 01:30:17] 2025-10-12 05:29:34,016 | INFO     | job summary report
[2025-10-12 01:30:17] 2025-10-12 05:29:34,016 | INFO     | --------------------------------------------------
[2025-10-12 01:30:17] 2025-10-12 05:29:34,016 | INFO     | PanDA job id: 6839242792
[2025-10-12 01:30:17] 2025-10-12 05:29:34,016 | INFO     | task id: 46676269
[2025-10-12 01:30:17] 2025-10-12 05:29:34,016 | INFO     | errors: (none)
[2025-10-12 01:30:17] 2025-10-12 05:29:34,016 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 01:30:17] 2025-10-12 05:29:34,017 | INFO     | pilot state: finished 
[2025-10-12 01:30:17] 2025-10-12 05:29:34,017 | INFO     | transexitcode: 0
[2025-10-12 01:30:17] 2025-10-12 05:29:34,017 | INFO     | exeerrorcode: 0
[2025-10-12 01:30:17] 2025-10-12 05:29:34,017 | INFO     | exeerrordiag: 
[2025-10-12 01:30:17] 2025-10-12 05:29:34,017 | INFO     | exitcode: 0
[2025-10-12 01:30:17] 2025-10-12 05:29:34,017 | INFO     | exitmsg: OK
[2025-10-12 01:30:17] 2025-10-12 05:29:34,017 | INFO     | cpuconsumptiontime: 29343 s
[2025-10-12 01:30:17] 2025-10-12 05:29:34,017 | INFO     | nevents: 400
[2025-10-12 01:30:17] 2025-10-12 05:29:34,017 | INFO     | neventsw: 0
[2025-10-12 01:30:17] 2025-10-12 05:29:34,017 | INFO     | pid: 9282
[2025-10-12 01:30:17] 2025-10-12 05:29:34,017 | INFO     | pgrp: 9282
[2025-10-12 01:30:17] 2025-10-12 05:29:34,017 | INFO     | corecount: 8
[2025-10-12 01:30:17] 2025-10-12 05:29:34,017 | INFO     | event service: False
[2025-10-12 01:30:17] 2025-10-12 05:29:34,017 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 3963: 2375153, 3964: 2375152, 3965: 2384206, 3967: 2384390, 3973: 2384584}
[2025-10-12 01:30:17] 2025-10-12 05:29:34,017 | INFO     | --------------------------------------------------
[2025-10-12 01:30:17] 2025-10-12 05:29:34,017 | INFO     | 
[2025-10-12 01:30:17] 2025-10-12 05:29:34,018 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 01:30:17] 2025-10-12 05:29:34,038 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 01:30:17] 2025-10-12 05:29:34,038 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 01:30:17] 2025-10-12 05:29:34,038 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 01:30:17] 2025-10-12 05:29:34,038 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 01:30:17] 2025-10-12 05:29:34,038 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 01:30:17] 2025-10-12 05:29:34,038 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 01:30:17] 2025-10-12 05:29:34,038 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 01:30:17] 2025-10-12 05:29:34,038 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 01:30:17] 2025-10-12 05:29:34,039 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 01:30:17] 2025-10-12 05:29:34,039 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 01:30:17] 2025-10-12 05:29:34,039 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 01:30:17] 2025-10-12 05:29:34,039 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 01:30:17] 2025-10-12 05:29:34,039 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 01:30:17] 2025-10-12 05:29:34,039 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 01:30:17] 2025-10-12 05:29:34,039 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 01:30:17] 2025-10-12 05:29:34,039 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 01:30:17] 2025-10-12 05:29:34,039 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 01:30:17] 2025-10-12 05:29:34,039 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 01:30:17] 2025-10-12 05:29:34,039 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 01:30:17] 2025-10-12 05:29:34,039 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 01:30:17] 2025-10-12 05:29:34,040 | INFO     | job 6839242792 has completed (purged errors)
[2025-10-12 01:30:17] 2025-10-12 05:29:34,040 | INFO     | overall cleanup function is called
[2025-10-12 01:30:17] 2025-10-12 05:29:34,247 | INFO     | PID=2846 has CPU usage=8.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 01:30:17] 2025-10-12 05:29:34,247 | INFO     | .. there are 2 such processes running
[2025-10-12 01:30:17] 2025-10-12 05:29:35,047 | INFO     | --- collectZombieJob: --- 10, [9282]
[2025-10-12 01:30:17] 2025-10-12 05:29:35,047 | INFO     | zombie collector waiting for pid 9282
[2025-10-12 01:30:17] 2025-10-12 05:29:35,047 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 01:30:17] 2025-10-12 05:29:35,047 | INFO     | collected zombie processes
[2025-10-12 01:30:17] 2025-10-12 05:29:35,047 | INFO     | will attempt to kill all subprocesses of pid=9282
[2025-10-12 01:30:17] 2025-10-12 05:29:35,160 | INFO     | process IDs to be killed: [9282] (in reverse order)
[2025-10-12 01:30:17] 2025-10-12 05:29:35,220 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 01:30:17] 2025-10-12 05:29:35,221 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 01:30:17] 2025-10-12 05:29:35,224 | INFO     | did not find any defunct processes belonging to 9282
[2025-10-12 01:30:17] 2025-10-12 05:29:35,227 | INFO     | did not find any defunct processes belonging to 9282
[2025-10-12 01:30:17] 2025-10-12 05:29:35,227 | INFO     | ready for new job
[2025-10-12 01:30:17] 2025-10-12 05:29:35,228 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 01:30:17] 2025-10-12 05:29:35,230 | INFO     | ***************************************
[2025-10-12 01:30:17] 2025-10-12 05:29:35,230 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 01:30:17] 2025-10-12 05:29:35,230 | INFO     | ***************************************
[2025-10-12 01:30:17] 2025-10-12 05:29:35,230 | INFO     | 
[2025-10-12 01:30:17] 2025-10-12 05:29:35,231 | INFO     | architecture information:
[2025-10-12 01:30:17] 2025-10-12 05:29:35,232 | INFO     | executing command: cat /etc/os-release
[2025-10-12 01:30:17] 2025-10-12 05:29:35,245 | INFO     | cat /etc/os-release:
[2025-10-12 01:30:17] NAME="CentOS Linux"
[2025-10-12 01:30:17] VERSION="7 (Core)"
[2025-10-12 01:30:17] ID="centos"
[2025-10-12 01:30:17] ID_LIKE="rhel fedora"
[2025-10-12 01:30:17] VERSION_ID="7"
[2025-10-12 01:30:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 01:30:17] ANSI_COLOR="0;31"
[2025-10-12 01:30:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 01:30:17] HOME_URL="https://www.centos.org/"
[2025-10-12 01:30:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 01:30:17] 
[2025-10-12 01:30:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 01:30:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 01:30:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 01:30:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 01:30:17] 
[2025-10-12 01:30:17] 2025-10-12 05:29:35,246 | INFO     | ***************************************
[2025-10-12 01:30:17] 2025-10-12 05:29:35,749 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 01:30:17] 2025-10-12 05:29:35,768 | INFO     | sufficient remaining disk space (32769048576 B)
[2025-10-12 01:30:17] 2025-10-12 05:29:35,768 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 01:30:17] 2025-10-12 05:29:35,769 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 01:30:17] 2025-10-12 05:29:35,769 | INFO     | update_server=False
[2025-10-12 01:30:17] 2025-10-12 05:29:35,769 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 01:30:17] 2025-10-12 05:29:35,769 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 01:30:17] 2025-10-12 05:29:35,818 | INFO     | all data control threads have been joined
[2025-10-12 01:30:17] 2025-10-12 05:29:36,164 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 01:30:17] 2025-10-12 05:29:36,164 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 01:30:17] 2025-10-12 05:29:36,164 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 01:30:17] 2025-10-12 05:29:36,164 | INFO     | will abort loop
[2025-10-12 01:30:17] 2025-10-12 05:29:36,428 | INFO     | all job control threads have been joined
[2025-10-12 01:30:17] 2025-10-12 05:29:36,774 | INFO     | [job] retrieve thread has finished
[2025-10-12 01:30:17] 2025-10-12 05:29:36,775 | INFO     | [job] queue monitor thread has finished
[2025-10-12 01:30:17] 2025-10-12 05:29:36,823 | INFO     | [data] control thread has finished
[2025-10-12 01:30:17] 2025-10-12 05:29:36,906 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 01:30:17] 2025-10-12 05:29:37,018 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 01:30:17] 2025-10-12 05:29:37,100 | INFO     | [payload] validate_post thread has finished
[2025-10-12 01:30:17] 2025-10-12 05:29:37,105 | INFO     | all payload control threads have been joined
[2025-10-12 01:30:17] 2025-10-12 05:29:37,170 | INFO     | [job] job monitor thread has finished
[2025-10-12 01:30:17] 2025-10-12 05:29:37,400 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 01:30:17] 2025-10-12 05:29:37,433 | INFO     | [job] control thread has finished
[2025-10-12 01:30:17] 2025-10-12 05:29:37,801 | INFO     | [job] validate thread has finished
[2025-10-12 01:30:17] 2025-10-12 05:29:37,967 | INFO     | [data] copytool_in thread has finished
[2025-10-12 01:30:17] 2025-10-12 05:29:37,989 | INFO     | [payload] failed_post thread has finished
[2025-10-12 01:30:17] 2025-10-12 05:29:38,027 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 01:30:17] 2025-10-12 05:29:38,109 | INFO     | [payload] control thread has finished
[2025-10-12 01:30:17] 2025-10-12 05:29:38,819 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 01:30:17] 2025-10-12 05:29:38,910 | INFO     | [data] copytool_out thread has finished
[2025-10-12 01:30:17] 2025-10-12 05:29:42,825 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 01:30:17] 2025-10-12 05:29:46,537 | INFO     | job.realtimelogging is not enabled
[2025-10-12 01:30:17] 2025-10-12 05:29:47,543 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 01:30:17] 2025-10-12 05:30:06,476 | INFO     | PID=2846 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 01:30:17] 2025-10-12 05:30:06,476 | INFO     | .. there are 2 such processes running
[2025-10-12 01:30:17] 2025-10-12 05:30:06,477 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 01:30:17] 2025-10-12 05:30:06,477 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 01:30:17] 2025-10-12 05:30:06,477 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 01:30:17] 2025-10-12 05:30:11,822 | INFO     | [monitor] cgroup control has ended
[2025-10-12 01:30:17] 2025-10-12 05:30:11,979 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140402569426752)>', '<ExcThread(monitor, started 140402011141888)>']
[2025-10-12 01:30:17] 2025-10-12 05:30:12,507 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 01:30:17] 2025-10-12 05:30:12,507 | INFO     | [monitor] control thread has ended
[2025-10-12 01:30:17] 2025-10-12 05:30:17,004 | INFO     | all workflow threads have been joined
[2025-10-12 01:30:17] 2025-10-12 05:30:17,005 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 01:30:17] 2025-10-12 05:30:17,005 | INFO     | traces error code: 0
[2025-10-12 01:30:17] 2025-10-12 05:30:17,006 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 01:30:17] 2025-10-12 05:30:17,122 [wrapper] ==== pilot stdout END ====
[2025-10-12 01:30:17] 2025-10-12 05:30:17,125 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 01:30:17] 2025-10-12 05:30:17,128 [wrapper] pilotpid: 2846
[2025-10-12 01:30:17] 2025-10-12 05:30:17,131 [wrapper] Pilot exit status: 0
[2025-10-12 01:30:17] 2025-10-12 05:30:17,142 [wrapper] pandaids: 6839242792
[2025-10-12 01:30:17] 2025-10-12 05:30:17,184 [wrapper] cleanup supervisor_pilot 21903 2847
[2025-10-12 01:30:17] 2025-10-12 05:30:17,188 [wrapper] Test setup, not cleaning
[2025-10-12 01:30:17] 2025-10-12 05:30:17,192 [wrapper] apfmon messages muted
[2025-10-12 01:30:17] 2025-10-12 05:30:17,195 [wrapper] ==== wrapper stdout END ====
[2025-10-12 01:30:17] 2025-10-12 05:30:17,199 [wrapper] ==== wrapper stderr END ====
[2025-10-12 01:30:17]  *** Error codes and diagnostics ***
[2025-10-12 01:30:17]     "exeErrorCode": 0,
[2025-10-12 01:30:17]     "exeErrorDiag": "",
[2025-10-12 01:30:17]     "pilotErrorCode": 0,
[2025-10-12 01:30:17]     "pilotErrorDiag": "",
[2025-10-12 01:30:17]  *** Listing of results directory ***
[2025-10-12 01:30:17] total 413528
[2025-10-12 01:30:17] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 21:53 pilot3.tar.gz
[2025-10-12 01:30:17] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 22:14 queuedata.json
[2025-10-12 01:30:17] -rwx------ 1 boincer umatlas     36292 Oct 11 22:15 runpilot2-wrapper.sh
[2025-10-12 01:30:17] -rw-r--r-- 1 boincer umatlas       100 Oct 12 00:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 01:30:17] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 00:22 run_atlas
[2025-10-12 01:30:17] -rw-r--r-- 1 boincer umatlas       105 Oct 12 00:22 job.xml
[2025-10-12 01:30:17] -rw-r--r-- 2 boincer umatlas 223087723 Oct 12 00:22 EVNT.46676267._003179.pool.root.1
[2025-10-12 01:30:17] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 00:22 start_atlas.sh
[2025-10-12 01:30:17] drwxrwx--x 2 boincer umatlas      4096 Oct 12 00:22 shared
[2025-10-12 01:30:17] -rw-r--r-- 2 boincer umatlas    569681 Oct 12 00:22 input.tar.gz
[2025-10-12 01:30:17] -rw-r--r-- 1 boincer umatlas         0 Oct 12 00:22 boinc_lockfile
[2025-10-12 01:30:17] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 00:22 pandaJob.out
[2025-10-12 01:30:17] -rw------- 1 boincer umatlas    975512 Oct 12 00:23 agis_schedconf.cvmfs.json
[2025-10-12 01:30:17] -rw------- 1 boincer umatlas   1560580 Oct 12 00:23 agis_ddmendpoints.agis.ALL.json
[2025-10-12 01:30:17] drwx------ 5 boincer umatlas      4096 Oct 12 00:23 pilot3
[2025-10-12 01:30:17] -rw------- 1 boincer umatlas 194651368 Oct 12 01:28 HITS.46676269._069202.pool.root.1
[2025-10-12 01:30:17] -rw------- 1 boincer umatlas      1047 Oct 12 01:29 memory_monitor_summary.json
[2025-10-12 01:30:17] -rw-r--r-- 1 boincer umatlas       529 Oct 12 01:29 boinc_task_state.xml
[2025-10-12 01:30:17] -rw------- 1 boincer umatlas    308268 Oct 12 01:29 log.46676269._069202.job.log.tgz.1
[2025-10-12 01:30:17] -rw------- 1 boincer umatlas      7842 Oct 12 01:29 heartbeat.json
[2025-10-12 01:30:17] -rw-r--r-- 1 boincer umatlas      6135 Oct 12 01:29 init_data.xml
[2025-10-12 01:30:17] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 01:29 boinc_mmap_file
[2025-10-12 01:30:17] -rw-r--r-- 1 boincer umatlas        27 Oct 12 01:29 wrapper_checkpoint.txt
[2025-10-12 01:30:17] -rw------- 1 boincer umatlas        95 Oct 12 01:30 pilot_heartbeat.json
[2025-10-12 01:30:17] -rw------- 1 boincer umatlas      5078 Oct 12 01:30 pilotlog.txt
[2025-10-12 01:30:17] -rw------- 1 boincer umatlas    597229 Oct 12 01:30 log.46676269._069202.job.log.1
[2025-10-12 01:30:17] -rw------- 1 boincer umatlas       357 Oct 12 01:30 output.list
[2025-10-12 01:30:17] -rw-r--r-- 1 boincer umatlas       620 Oct 12 01:30 runtime_log
[2025-10-12 01:30:17] -rw------- 1 boincer umatlas    921600 Oct 12 01:30 result.tar.gz
[2025-10-12 01:30:17] -rw-r--r-- 1 boincer umatlas      8703 Oct 12 01:30 runtime_log.err
[2025-10-12 01:30:17] -rw------- 1 boincer umatlas       658 Oct 12 01:30 LXkLDm7m0R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmwJiNDmibmUJm.diag
[2025-10-12 01:30:17] -rw-r--r-- 1 boincer umatlas     22278 Oct 12 01:30 stderr.txt
[2025-10-12 01:30:17] HITS file was successfully produced:
[2025-10-12 01:30:17] -rw------- 1 boincer umatlas 194651368 Oct 12 01:28 shared/HITS.pool.root.1
[2025-10-12 01:30:17]  *** Contents of shared directory: ***
[2025-10-12 01:30:17] total 409436
[2025-10-12 01:30:17] -rw-r--r-- 2 boincer umatlas 223087723 Oct 12 00:22 ATLAS.root_0
[2025-10-12 01:30:17] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 00:22 start_atlas.sh
[2025-10-12 01:30:17] -rw-r--r-- 2 boincer umatlas    569681 Oct 12 00:22 input.tar.gz
[2025-10-12 01:30:17] -rw------- 1 boincer umatlas 194651368 Oct 12 01:28 HITS.pool.root.1
[2025-10-12 01:30:17] -rw------- 1 boincer umatlas    921600 Oct 12 01:30 result.tar.gz
01:30:19 (31409): run_atlas exited; CPU time 29351.135583
01:30:19 (31409): called boinc_finish(0)

</stderr_txt>
]]>

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