Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:09:26 (303153): wrapper (7.7.26015): starting
21:09:26 (303153): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 21:09:26] Arguments: --nthreads 4
[2025-10-12 21:09:26] Threads: 4
[2025-10-12 21:09:26] Checking for CVMFS
[2025-10-12 21:09:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 21:09:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 21:09:27] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 21:09:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 21:09:27] 2.9.2.0 2853088 4730 97264 151633 2 57 28765519 36864001 0 130560 0 4256536 99.992 164111 897 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 21:09:27] CVMFS is ok
[2025-10-12 21:09:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 21:09:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 21:09:27] Further information can be found at the LHC@home message board.
[2025-10-12 21:09:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 21:09:27] Checking for apptainer binary...
[2025-10-12 21:09:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 21:09:27] Running /usr/bin/apptainer --version
[2025-10-12 21:09:27] apptainer version 1.4.1-1.1
[2025-10-12 21:09:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 21:09:27] atlasA139a
[2025-10-12 21:09:27] apptainer works
[2025-10-12 21:09:27] Set ATHENA_PROC_NUMBER=4
[2025-10-12 21:09:27] Set ATHENA_CORE_NUMBER=4
[2025-10-12 21:09:27] Starting ATLAS job with PandaID=6839083842
[2025-10-12 21:09:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 22:22:46]  *** The last 200 lines of the pilot log: ***
[2025-10-12 22:22:46]  protocol_id=None
[2025-10-12 22:22:46]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 22:22:46]  replicas=None
[2025-10-12 22:22:46]  scope=mc23_13p6TeV
[2025-10-12 22:22:46]  status=None
[2025-10-12 22:22:46]  status_code=0
[2025-10-12 22:22:46]  storage_token=
[2025-10-12 22:22:46]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6839083842/log.46676269._066606.job.log.tgz.1
[2025-10-12 22:22:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/62/93/log.46676269._066606.job.log.tgz.1
[2025-10-12 22:22:46]  workdir=None
[2025-10-12 22:22:46] ]
[2025-10-12 22:22:46] 2025-10-12 20:21:59,461 | INFO     | transferring file log.46676269._066606.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6839083842/log.46676269._066606.job.log.tgz.1 to /local/data/boinc/
[2025-10-12 22:22:46] 2025-10-12 20:21:59,461 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6839083842/log.46676269._066606.job.log.tgz.1 /local/data/boinc/slots/0/log.46676269._0666
[2025-10-12 22:22:46] 2025-10-12 20:21:59,481 | INFO     | adding to output.list: log.46676269._066606.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/62/93/log.46676269._066606.job.log.tg
[2025-10-12 22:22:46] 2025-10-12 20:21:59,481 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 22:22:46] 2025-10-12 20:21:59,481 | INFO     | summary of transferred files:
[2025-10-12 22:22:46] 2025-10-12 20:21:59,481 | INFO     |  -- lfn=log.46676269._066606.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 22:22:46] 2025-10-12 20:21:59,481 | INFO     | stage-out finished correctly
[2025-10-12 22:22:46] 2025-10-12 20:21:59,520 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 22:22:46] 2025-10-12 20:21:59,886 | INFO     | job 6839083842 has state=finished
[2025-10-12 22:22:46] 2025-10-12 20:21:59,886 | INFO     | preparing for final server update for job 6839083842 in state='finished'
[2025-10-12 22:22:46] 2025-10-12 20:21:59,887 | INFO     | this job has now completed (state=finished)
[2025-10-12 22:22:46] 2025-10-12 20:21:59,887 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 22:22:46] 2025-10-12 20:21:59,887 | INFO     | log transfer has been attempted: DONE
[2025-10-12 22:22:46] 2025-10-12 20:21:59,887 | INFO     | job 6839083842 has finished - writing final server update
[2025-10-12 22:22:46] 2025-10-12 20:21:59,887 | INFO     | total number of processed events: 400 (read)
[2025-10-12 22:22:46] 2025-10-12 20:21:59,888 | INFO     | executing command: lscpu
[2025-10-12 22:22:46] 2025-10-12 20:21:59,910 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 22:22:46] 2025-10-12 20:22:00,072 | INFO     | time since job start (4345s) is within the limit (172800.0s)
[2025-10-12 22:22:46] 2025-10-12 20:22:00,072 | INFO     | 4345s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-12 22:22:46] 2025-10-12 20:22:00,850 | INFO     | monitor loop #335: job 0:6839083842 is in state 'finished'
[2025-10-12 22:22:46] 2025-10-12 20:22:00,850 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 22:22:46] 2025-10-12 20:22:02,077 | INFO     | time since job start (4347s) is within the limit (172800.0s)
[2025-10-12 22:22:46] 2025-10-12 20:22:03,352 | INFO     | monitor loop #336: job 0:6839083842 is in state 'finished'
[2025-10-12 22:22:46] 2025-10-12 20:22:03,353 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 22:22:46] 2025-10-12 20:22:04,082 | INFO     | time since job start (4349s) is within the limit (172800.0s)
[2025-10-12 22:22:46] 2025-10-12 20:22:05,291 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 22:22:46] 2025-10-12 20:22:05,292 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3245.897375
[2025-10-12 22:22:46] 2025-10-12 20:22:05,294 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6839083842/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 22:22:46] 2025-10-12 20:22:05,294 | INFO     | extracted standard info from prmon json
[2025-10-12 22:22:46] 2025-10-12 20:22:05,294 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 22:22:46] 2025-10-12 20:22:05,294 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 22:22:46] 2025-10-12 20:22:05,294 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 22:22:46] 2025-10-12 20:22:05,294 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 22:22:46] 2025-10-12 20:22:05,295 | INFO     | fitting pss+swap vs Time
[2025-10-12 22:22:46] 2025-10-12 20:22:05,295 | INFO     | sum of square deviations: 81266640.0
[2025-10-12 22:22:46] 2025-10-12 20:22:05,295 | INFO     | sum of deviations: -4095812121.0
[2025-10-12 22:22:46] 2025-10-12 20:22:05,295 | INFO     | mean x: 1760298425.5
[2025-10-12 22:22:46] 2025-10-12 20:22:05,295 | INFO     | mean y: 2457323.96875
[2025-10-12 22:22:46] 2025-10-12 20:22:05,295 | INFO     | -- intersect: 88720923200.49712
[2025-10-12 22:22:46] 2025-10-12 20:22:05,295 | INFO     | intersect: 88720923200.49712
[2025-10-12 22:22:46] 2025-10-12 20:22:05,295 | INFO     | chi2: 0.08464328976339541
[2025-10-12 22:22:46] 2025-10-12 20:22:05,296 | INFO     | -- intersect: 88720923200.49712
[2025-10-12 22:22:46] 2025-10-12 20:22:05,296 | INFO     | current memory leak: -50.40 B/s (using 64 data points, chi2=0.08)
[2025-10-12 22:22:46] 2025-10-12 20:22:05,296 | INFO     | could have reported an average CPU frequency of 3571 MHz (6 samples)
[2025-10-12 22:22:46] 2025-10-12 20:22:05,296 | INFO     | ..............................
[2025-10-12 22:22:46] 2025-10-12 20:22:05,296 | INFO     | . Timing measurements:
[2025-10-12 22:22:46] 2025-10-12 20:22:05,296 | INFO     | . get job = 0 s
[2025-10-12 22:22:46] 2025-10-12 20:22:05,296 | INFO     | . initial setup = 1 s
[2025-10-12 22:22:46] 2025-10-12 20:22:05,296 | INFO     | . payload setup = 4 s
[2025-10-12 22:22:46] 2025-10-12 20:22:05,296 | INFO     | . stage-in = 0 s
[2025-10-12 22:22:46] 2025-10-12 20:22:05,296 | INFO     | . payload execution = 4320 s
[2025-10-12 22:22:46] 2025-10-12 20:22:05,296 | INFO     | . stage-out = 0 s
[2025-10-12 22:22:46] 2025-10-12 20:22:05,296 | INFO     | . log creation = 0 s
[2025-10-12 22:22:46] 2025-10-12 20:22:05,296 | INFO     | ..............................
[2025-10-12 22:22:46] 2025-10-12 20:22:05,336 | INFO     | 
[2025-10-12 22:22:46] 2025-10-12 20:22:05,336 | INFO     | job summary report
[2025-10-12 22:22:46] 2025-10-12 20:22:05,336 | INFO     | --------------------------------------------------
[2025-10-12 22:22:46] 2025-10-12 20:22:05,336 | INFO     | PanDA job id: 6839083842
[2025-10-12 22:22:46] 2025-10-12 20:22:05,337 | INFO     | task id: 46676269
[2025-10-12 22:22:46] 2025-10-12 20:22:05,337 | INFO     | errors: (none)
[2025-10-12 22:22:46] 2025-10-12 20:22:05,337 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 22:22:46] 2025-10-12 20:22:05,337 | INFO     | pilot state: finished 
[2025-10-12 22:22:46] 2025-10-12 20:22:05,337 | INFO     | transexitcode: 0
[2025-10-12 22:22:46] 2025-10-12 20:22:05,337 | INFO     | exeerrorcode: 0
[2025-10-12 22:22:46] 2025-10-12 20:22:05,337 | INFO     | exeerrordiag: 
[2025-10-12 22:22:46] 2025-10-12 20:22:05,337 | INFO     | exitcode: 0
[2025-10-12 22:22:46] 2025-10-12 20:22:05,337 | INFO     | exitmsg: OK
[2025-10-12 22:22:46] 2025-10-12 20:22:05,337 | INFO     | cpuconsumptiontime: 16320 s
[2025-10-12 22:22:46] 2025-10-12 20:22:05,337 | INFO     | nevents: 400
[2025-10-12 22:22:46] 2025-10-12 20:22:05,337 | INFO     | neventsw: 0
[2025-10-12 22:22:46] 2025-10-12 20:22:05,337 | INFO     | pid: 313489
[2025-10-12 22:22:46] 2025-10-12 20:22:05,337 | INFO     | pgrp: 313489
[2025-10-12 22:22:46] 2025-10-12 20:22:05,337 | INFO     | corecount: 4
[2025-10-12 22:22:46] 2025-10-12 20:22:05,337 | INFO     | event service: False
[2025-10-12 22:22:46] 2025-10-12 20:22:05,337 | INFO     | sizes: {0: 2348860, 4: 2349122, 11: 2349150, 4329: 2375369, 4330: 2384429, 4336: 2384567}
[2025-10-12 22:22:46] 2025-10-12 20:22:05,337 | INFO     | --------------------------------------------------
[2025-10-12 22:22:46] 2025-10-12 20:22:05,337 | INFO     | 
[2025-10-12 22:22:46] 2025-10-12 20:22:05,337 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-12 22:22:46] 2025-10-12 20:22:05,357 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 22:22:46] 2025-10-12 20:22:05,358 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 22:22:46] 2025-10-12 20:22:05,358 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 22:22:46] 2025-10-12 20:22:05,358 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 22:22:46] 2025-10-12 20:22:05,358 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 22:22:46] 2025-10-12 20:22:05,358 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 22:22:46] 2025-10-12 20:22:05,358 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 22:22:46] 2025-10-12 20:22:05,358 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 22:22:46] 2025-10-12 20:22:05,358 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 22:22:46] 2025-10-12 20:22:05,358 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 22:22:46] 2025-10-12 20:22:05,358 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 22:22:46] 2025-10-12 20:22:05,358 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 22:22:46] 2025-10-12 20:22:05,358 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 22:22:46] 2025-10-12 20:22:05,358 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 22:22:46] 2025-10-12 20:22:05,358 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 22:22:46] 2025-10-12 20:22:05,358 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 22:22:46] 2025-10-12 20:22:05,358 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 22:22:46] 2025-10-12 20:22:05,358 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 22:22:46] 2025-10-12 20:22:05,358 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 22:22:46] 2025-10-12 20:22:05,358 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 22:22:46] 2025-10-12 20:22:05,358 | INFO     | job 6839083842 has completed (purged errors)
[2025-10-12 22:22:46] 2025-10-12 20:22:05,358 | INFO     | overall cleanup function is called
[2025-10-12 22:22:46] 2025-10-12 20:22:06,365 | INFO     | --- collectZombieJob: --- 10, [313489]
[2025-10-12 22:22:46] 2025-10-12 20:22:06,365 | INFO     | zombie collector waiting for pid 313489
[2025-10-12 22:22:46] 2025-10-12 20:22:06,365 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 22:22:46] 2025-10-12 20:22:06,366 | INFO     | collected zombie processes
[2025-10-12 22:22:46] 2025-10-12 20:22:06,366 | INFO     | will attempt to kill all subprocesses of pid=313489
[2025-10-12 22:22:46] 2025-10-12 20:22:06,411 | INFO     | process IDs to be killed: [313489] (in reverse order)
[2025-10-12 22:22:46] 2025-10-12 20:22:06,446 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 22:22:46] 2025-10-12 20:22:06,447 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 22:22:46] 2025-10-12 20:22:06,448 | INFO     | did not find any defunct processes belonging to 313489
[2025-10-12 22:22:46] 2025-10-12 20:22:06,450 | INFO     | did not find any defunct processes belonging to 313489
[2025-10-12 22:22:46] 2025-10-12 20:22:06,450 | INFO     | ready for new job
[2025-10-12 22:22:46] 2025-10-12 20:22:06,450 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 22:22:46] 2025-10-12 20:22:06,451 | INFO     | ***************************************
[2025-10-12 22:22:46] 2025-10-12 20:22:06,451 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 22:22:46] 2025-10-12 20:22:06,451 | INFO     | ***************************************
[2025-10-12 22:22:46] 2025-10-12 20:22:06,451 | INFO     | 
[2025-10-12 22:22:46] 2025-10-12 20:22:06,451 | INFO     | architecture information:
[2025-10-12 22:22:46] 2025-10-12 20:22:06,451 | INFO     | executing command: cat /etc/os-release
[2025-10-12 22:22:46] 2025-10-12 20:22:06,466 | INFO     | cat /etc/os-release:
[2025-10-12 22:22:46] NAME="CentOS Linux"
[2025-10-12 22:22:46] VERSION="7 (Core)"
[2025-10-12 22:22:46] ID="centos"
[2025-10-12 22:22:46] ID_LIKE="rhel fedora"
[2025-10-12 22:22:46] VERSION_ID="7"
[2025-10-12 22:22:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 22:22:46] ANSI_COLOR="0;31"
[2025-10-12 22:22:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 22:22:46] HOME_URL="https://www.centos.org/"
[2025-10-12 22:22:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 22:22:46] 
[2025-10-12 22:22:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 22:22:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 22:22:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 22:22:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 22:22:46] 
[2025-10-12 22:22:46] 2025-10-12 20:22:06,466 | INFO     | ***************************************
[2025-10-12 22:22:46] 2025-10-12 20:22:06,969 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 22:22:46] 2025-10-12 20:22:06,988 | INFO     | sufficient remaining disk space (329965895680 B)
[2025-10-12 22:22:46] 2025-10-12 20:22:06,988 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 22:22:46] 2025-10-12 20:22:06,988 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 22:22:46] 2025-10-12 20:22:06,988 | INFO     | update_server=False
[2025-10-12 22:22:46] 2025-10-12 20:22:06,988 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 22:22:46] 2025-10-12 20:22:06,989 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:22:46] 2025-10-12 20:22:06,989 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:22:46] 2025-10-12 20:22:06,989 | INFO     | aborting loop
[2025-10-12 22:22:46] 2025-10-12 20:22:07,413 | INFO     | all job control threads have been joined
[2025-10-12 22:22:46] 2025-10-12 20:22:07,531 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 22:22:46] 2025-10-12 20:22:07,913 | INFO     | all data control threads have been joined
[2025-10-12 22:22:46] 2025-10-12 20:22:07,994 | INFO     | [job] queue monitor thread has finished
[2025-10-12 22:22:46] 2025-10-12 20:22:07,994 | INFO     | [job] retrieve thread has finished
[2025-10-12 22:22:46] 2025-10-12 20:22:07,995 | INFO     | [job] job monitor thread has finished
[2025-10-12 22:22:46] 2025-10-12 20:22:08,003 | INFO     | [data] copytool_in thread has finished
[2025-10-12 22:22:46] 2025-10-12 20:22:08,186 | INFO     | all payload control threads have been joined
[2025-10-12 22:22:46] 2025-10-12 20:22:08,418 | INFO     | [job] control thread has finished
[2025-10-12 22:22:46] 2025-10-12 20:22:08,491 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 22:22:46] 2025-10-12 20:22:08,634 | INFO     | [job] validate thread has finished
[2025-10-12 22:22:46] 2025-10-12 20:22:08,794 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 22:22:46] 2025-10-12 20:22:08,831 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 22:22:46] 2025-10-12 20:22:08,919 | INFO     | [data] control thread has finished
[2025-10-12 22:22:46] 2025-10-12 20:22:09,022 | INFO     | [payload] failed_post thread has finished
[2025-10-12 22:22:46] 2025-10-12 20:22:09,192 | INFO     | [payload] control thread has finished
[2025-10-12 22:22:46] 2025-10-12 20:22:09,535 | INFO     | [data] copytool_out thread has finished
[2025-10-12 22:22:46] 2025-10-12 20:22:09,579 | INFO     | [payload] validate_post thread has finished
[2025-10-12 22:22:46] 2025-10-12 20:22:10,070 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 22:22:46] 2025-10-12 20:22:14,078 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 22:22:46] 2025-10-12 20:22:17,204 | INFO     | job.realtimelogging is not enabled
[2025-10-12 22:22:46] 2025-10-12 20:22:18,209 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 22:22:46] 2025-10-12 20:22:37,218 | INFO     | PID=306933 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 22:22:46] 2025-10-12 20:22:37,218 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 22:22:46] 2025-10-12 20:22:37,218 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 22:22:46] 2025-10-12 20:22:37,218 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 22:22:46] 2025-10-12 20:22:40,334 | INFO     | [monitor] cgroup control has ended
[2025-10-12 22:22:46] 2025-10-12 20:22:41,307 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139715783894848)>', '<ExcThread(monitor, started 139714405328640)>']
[2025-10-12 22:22:46] 2025-10-12 20:22:42,245 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 22:22:46] 2025-10-12 20:22:42,245 | INFO     | [monitor] control thread has ended
[2025-10-12 22:22:46] 2025-10-12 20:22:46,333 | INFO     | all workflow threads have been joined
[2025-10-12 22:22:46] 2025-10-12 20:22:46,334 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 22:22:46] 2025-10-12 20:22:46,335 | INFO     | traces error code: 0
[2025-10-12 22:22:46] 2025-10-12 20:22:46,335 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 22:22:46] 2025-10-12 20:22:46,417 [wrapper] ==== pilot stdout END ====
[2025-10-12 22:22:46] 2025-10-12 20:22:46,422 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 22:22:46] 2025-10-12 20:22:46,426 [wrapper] pilotpid: 306933
[2025-10-12 22:22:46] 2025-10-12 20:22:46,430 [wrapper] Pilot exit status: 0
[2025-10-12 22:22:46] 2025-10-12 20:22:46,442 [wrapper] pandaids: 6839083842
[2025-10-12 22:22:46] 2025-10-12 20:22:46,466 [wrapper] cleanup supervisor_pilot  323300 306934
[2025-10-12 22:22:46] 2025-10-12 20:22:46,470 [wrapper] Test setup, not cleaning
[2025-10-12 22:22:46] 2025-10-12 20:22:46,474 [wrapper] apfmon messages muted
[2025-10-12 22:22:46] 2025-10-12 20:22:46,478 [wrapper] ==== wrapper stdout END ====
[2025-10-12 22:22:46] 2025-10-12 20:22:46,482 [wrapper] ==== wrapper stderr END ====
[2025-10-12 22:22:46]  *** Error codes and diagnostics ***
[2025-10-12 22:22:46]     "exeErrorCode": 0,
[2025-10-12 22:22:46]     "exeErrorDiag": "",
[2025-10-12 22:22:46]     "pilotErrorCode": 0,
[2025-10-12 22:22:46]     "pilotErrorDiag": "",
[2025-10-12 22:22:46]  *** Listing of results directory ***
[2025-10-12 22:22:46] total 408964
[2025-10-12 22:22:46] -rw-r--r-- 1 boinc boinc    557409 Oct 12 00:51 pilot3.tar.gz
[2025-10-12 22:22:46] -rwx------ 1 boinc boinc     36292 Oct 12 01:05 runpilot2-wrapper.sh
[2025-10-12 22:22:46] -rw-r--r-- 1 boinc boinc      5112 Oct 12 01:05 queuedata.json
[2025-10-12 22:22:46] -rw-r--r-- 1 boinc boinc       100 Oct 12 21:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 22:22:46] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 21:09 run_atlas
[2025-10-12 22:22:46] -rw-r--r-- 1 boinc boinc       105 Oct 12 21:09 job.xml
[2025-10-12 22:22:46] -rw-r--r-- 2 boinc boinc 218551221 Oct 12 21:09 EVNT.46676267._002683.pool.root.1
[2025-10-12 22:22:46] -rw-r--r-- 2 boinc boinc    569678 Oct 12 21:09 input.tar.gz
[2025-10-12 22:22:46] -rw-r--r-- 2 boinc boinc     15120 Oct 12 21:09 start_atlas.sh
[2025-10-12 22:22:46] drwxrwx--x 2 boinc boinc      4096 Oct 12 21:09 shared
[2025-10-12 22:22:46] -rw-r--r-- 1 boinc boinc         0 Oct 12 21:09 boinc_setup_complete
[2025-10-12 22:22:46] -rw-r--r-- 1 boinc boinc      6382 Oct 12 21:09 init_data.xml
[2025-10-12 22:22:46] -rw-r--r-- 1 boinc boinc         0 Oct 12 21:09 boinc_lockfile
[2025-10-12 22:22:46] -rw-r--r-- 1 boinc boinc      2550 Oct 12 21:09 pandaJob.out
[2025-10-12 22:22:46] -rw------- 1 boinc boinc    975528 Oct 12 21:09 agis_schedconf.cvmfs.json
[2025-10-12 22:22:46] -rw------- 1 boinc boinc   1560580 Oct 12 21:09 agis_ddmendpoints.agis.ALL.json
[2025-10-12 22:22:46] drwx------ 5 boinc boinc      4096 Oct 12 21:09 pilot3
[2025-10-12 22:22:46] -rw------- 1 boinc boinc 194492977 Oct 12 22:21 HITS.46676269._066606.pool.root.1
[2025-10-12 22:22:46] -rw-r--r-- 1 boinc boinc       529 Oct 12 22:21 boinc_task_state.xml
[2025-10-12 22:22:46] -rw------- 1 boinc boinc      1022 Oct 12 22:21 memory_monitor_summary.json
[2025-10-12 22:22:46] -rw------- 1 boinc boinc        95 Oct 12 22:21 pilot_heartbeat.json
[2025-10-12 22:22:46] -rw------- 1 boinc boinc    269851 Oct 12 22:21 log.46676269._066606.job.log.tgz.1
[2025-10-12 22:22:46] -rw------- 1 boinc boinc      7773 Oct 12 22:22 heartbeat.json
[2025-10-12 22:22:46] -rw-r--r-- 1 boinc boinc      8192 Oct 12 22:22 boinc_mmap_file
[2025-10-12 22:22:46] -rw-r--r-- 1 boinc boinc        27 Oct 12 22:22 wrapper_checkpoint.txt
[2025-10-12 22:22:46] -rw------- 1 boinc boinc      4823 Oct 12 22:22 pilotlog.txt
[2025-10-12 22:22:46] -rw------- 1 boinc boinc    644807 Oct 12 22:22 log.46676269._066606.job.log.1
[2025-10-12 22:22:46] -rw------- 1 boinc boinc       357 Oct 12 22:22 output.list
[2025-10-12 22:22:46] -rw-r--r-- 1 boinc boinc       620 Oct 12 22:22 runtime_log
[2025-10-12 22:22:46] -rw------- 1 boinc boinc    931840 Oct 12 22:22 result.tar.gz
[2025-10-12 22:22:46] -rw------- 1 boinc boinc       662 Oct 12 22:22 vqWLDmNpxR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmrkSMDmcbEtmn.diag
[2025-10-12 22:22:46] -rw-r--r-- 1 boinc boinc      8797 Oct 12 22:22 runtime_log.err
[2025-10-12 22:22:46] -rw-r--r-- 1 boinc boinc     21738 Oct 12 22:22 stderr.txt
[2025-10-12 22:22:46] HITS file was successfully produced:
[2025-10-12 22:22:46] -rw------- 1 boinc boinc 194492977 Oct 12 22:21 shared/HITS.pool.root.1
[2025-10-12 22:22:46]  *** Contents of shared directory: ***
[2025-10-12 22:22:46] total 404864
[2025-10-12 22:22:46] -rw-r--r-- 2 boinc boinc 218551221 Oct 12 21:09 ATLAS.root_0
[2025-10-12 22:22:46] -rw-r--r-- 2 boinc boinc    569678 Oct 12 21:09 input.tar.gz
[2025-10-12 22:22:46] -rw-r--r-- 2 boinc boinc     15120 Oct 12 21:09 start_atlas.sh
[2025-10-12 22:22:46] -rw------- 1 boinc boinc 194492977 Oct 12 22:21 HITS.pool.root.1
[2025-10-12 22:22:46] -rw------- 1 boinc boinc    931840 Oct 12 22:22 result.tar.gz
22:22:48 (303153): run_atlas exited; CPU time 16333.657613
22:22:48 (303153): called boinc_finish(0)

</stderr_txt>
]]>

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