Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:00:28 (2872621): wrapper (7.7.26015): starting
21:00:28 (2872621): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 21:00:28] Arguments: --nthreads 3
[2025-10-12 21:00:28] Threads: 3
[2025-10-12 21:00:28] Checking for CVMFS
[2025-10-12 21:00:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 21:00:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 21:00:28] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 21:00:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 21:00:28] 2.9.2.0 1460546 4750 83620 151633 1 57 4237714 36864000 0 130560 0 3735072 99.991 161534 834 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 21:00:28] CVMFS is ok
[2025-10-12 21:00:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 21:00:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 21:00:28] Further information can be found at the LHC@home message board.
[2025-10-12 21:00:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 21:00:28] Checking for apptainer binary...
[2025-10-12 21:00:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 21:00:28] Running /usr/bin/apptainer --version
[2025-10-12 21:00:29] apptainer version 1.4.1-1.1
[2025-10-12 21:00:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 21:00:29] thA371a
[2025-10-12 21:00:29] apptainer works
[2025-10-12 21:00:29] Set ATHENA_PROC_NUMBER=3
[2025-10-12 21:00:29] Set ATHENA_CORE_NUMBER=3
[2025-10-12 21:00:29] Starting ATLAS job with PandaID=6839162143
[2025-10-12 21:00:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 22:25:47]  *** The last 200 lines of the pilot log: ***
[2025-10-12 22:25:47] 2025-10-12 20:25:12,072 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 22:25:47] 2025-10-12 20:25:12,072 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 22:25:47] 2025-10-12 20:25:12,072 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 22:25:47] 2025-10-12 20:25:12,073 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 22:25:47] 2025-10-12 20:25:12,073 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 22:25:47] 2025-10-12 20:25:12,073 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 22:25:47] 2025-10-12 20:25:12,073 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 22:25:47] 2025-10-12 20:25:12,073 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 22:25:47] 2025-10-12 20:25:12,073 | INFO     | job 6839162143 has completed (purged errors)
[2025-10-12 22:25:47] 2025-10-12 20:25:12,073 | INFO     | overall cleanup function is called
[2025-10-12 22:25:47] 2025-10-12 20:25:13,079 | INFO     | --- collectZombieJob: --- 10, [2882772]
[2025-10-12 22:25:47] 2025-10-12 20:25:13,080 | INFO     | zombie collector waiting for pid 2882772
[2025-10-12 22:25:47] 2025-10-12 20:25:13,080 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 22:25:47] 2025-10-12 20:25:13,080 | INFO     | collected zombie processes
[2025-10-12 22:25:47] 2025-10-12 20:25:13,080 | INFO     | will attempt to kill all subprocesses of pid=2882772
[2025-10-12 22:25:47] 2025-10-12 20:25:13,124 | INFO     | process IDs to be killed: [2882772] (in reverse order)
[2025-10-12 22:25:47] 2025-10-12 20:25:13,147 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 22:25:47] 2025-10-12 20:25:13,148 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 22:25:47] 2025-10-12 20:25:13,149 | INFO     | did not find any defunct processes belonging to 2882772
[2025-10-12 22:25:47] 2025-10-12 20:25:13,150 | INFO     | did not find any defunct processes belonging to 2882772
[2025-10-12 22:25:47] 2025-10-12 20:25:13,150 | INFO     | ready for new job
[2025-10-12 22:25:47] 2025-10-12 20:25:13,150 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 22:25:47] 2025-10-12 20:25:13,151 | INFO     | ***************************************
[2025-10-12 22:25:47] 2025-10-12 20:25:13,151 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 22:25:47] 2025-10-12 20:25:13,151 | INFO     | ***************************************
[2025-10-12 22:25:47] 2025-10-12 20:25:13,151 | INFO     | 
[2025-10-12 22:25:47] 2025-10-12 20:25:13,151 | INFO     | architecture information:
[2025-10-12 22:25:47] 2025-10-12 20:25:13,151 | INFO     | executing command: cat /etc/os-release
[2025-10-12 22:25:47] 2025-10-12 20:25:13,159 | INFO     | cat /etc/os-release:
[2025-10-12 22:25:47] NAME="CentOS Linux"
[2025-10-12 22:25:47] VERSION="7 (Core)"
[2025-10-12 22:25:47] ID="centos"
[2025-10-12 22:25:47] ID_LIKE="rhel fedora"
[2025-10-12 22:25:47] VERSION_ID="7"
[2025-10-12 22:25:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 22:25:47] ANSI_COLOR="0;31"
[2025-10-12 22:25:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 22:25:47] HOME_URL="https://www.centos.org/"
[2025-10-12 22:25:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 22:25:47] 
[2025-10-12 22:25:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 22:25:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 22:25:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 22:25:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 22:25:47] 
[2025-10-12 22:25:47] 2025-10-12 20:25:13,160 | INFO     | ***************************************
[2025-10-12 22:25:47] 2025-10-12 20:25:13,663 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 22:25:47] 2025-10-12 20:25:13,675 | INFO     | sufficient remaining disk space (255233884160 B)
[2025-10-12 22:25:47] 2025-10-12 20:25:13,676 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 22:25:47] 2025-10-12 20:25:13,676 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 22:25:47] 2025-10-12 20:25:13,676 | INFO     | update_server=False
[2025-10-12 22:25:47] 2025-10-12 20:25:13,676 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 22:25:47] 2025-10-12 20:25:13,676 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 22:25:47] 2025-10-12 20:25:13,676 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:25:47] 2025-10-12 20:25:13,734 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 22:25:47] 2025-10-12 20:25:13,734 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 22:25:47] 2025-10-12 20:25:13,734 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:25:47] 2025-10-12 20:25:13,734 | INFO     | will abort loop
[2025-10-12 22:25:47] 2025-10-12 20:25:14,304 | INFO     | all data control threads have been joined
[2025-10-12 22:25:47] 2025-10-12 20:25:14,373 | INFO     | all payload control threads have been joined
[2025-10-12 22:25:47] 2025-10-12 20:25:14,392 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 22:25:47] 2025-10-12 20:25:14,681 | INFO     | [job] retrieve thread has finished
[2025-10-12 22:25:47] 2025-10-12 20:25:14,682 | INFO     | [job] queue monitor thread has finished
[2025-10-12 22:25:47] 2025-10-12 20:25:14,740 | INFO     | [job] job monitor thread has finished
[2025-10-12 22:25:47] 2025-10-12 20:25:15,210 | INFO     | all job control threads have been joined
[2025-10-12 22:25:47] 2025-10-12 20:25:15,233 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 22:25:47] 2025-10-12 20:25:15,309 | INFO     | [data] control thread has finished
[2025-10-12 22:25:47] 2025-10-12 20:25:15,378 | INFO     | [payload] control thread has finished
[2025-10-12 22:25:47] 2025-10-12 20:25:15,392 | INFO     | [payload] failed_post thread has finished
[2025-10-12 22:25:47] 2025-10-12 20:25:15,474 | INFO     | [data] copytool_in thread has finished
[2025-10-12 22:25:47] 2025-10-12 20:25:15,798 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 22:25:47] 2025-10-12 20:25:15,941 | INFO     | [job] validate thread has finished
[2025-10-12 22:25:47] 2025-10-12 20:25:16,057 | INFO     | [payload] validate_post thread has finished
[2025-10-12 22:25:47] 2025-10-12 20:25:16,094 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 22:25:47] 2025-10-12 20:25:16,131 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 22:25:47] 2025-10-12 20:25:16,216 | INFO     | [job] control thread has finished
[2025-10-12 22:25:47] 2025-10-12 20:25:16,398 | INFO     | [data] copytool_out thread has finished
[2025-10-12 22:25:47] 2025-10-12 20:25:17,683 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 22:25:47] 2025-10-12 20:25:41,844 | INFO     | [monitor] cgroup control has ended
[2025-10-12 22:25:47] 2025-10-12 20:25:42,844 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140693968062272)>', '<ExcThread(monitor, started 140693624301312)>']
[2025-10-12 22:25:47] 2025-10-12 20:25:43,502 | INFO     | PID=2876336 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 22:25:47] 2025-10-12 20:25:43,502 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 22:25:47] 2025-10-12 20:25:43,502 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 22:25:47] 2025-10-12 20:25:43,502 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 22:25:47] 2025-10-12 20:25:43,502 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 22:25:47] 2025-10-12 20:25:43,502 | INFO     | [monitor] control thread has ended
[2025-10-12 22:25:47] 2025-10-12 20:25:47,870 | INFO     | all workflow threads have been joined
[2025-10-12 22:25:47] 2025-10-12 20:25:47,870 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 22:25:47] 2025-10-12 20:25:47,870 | INFO     | traces error code: 0
[2025-10-12 22:25:47] 2025-10-12 20:25:47,871 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 22:25:47] 2025-10-12 20:25:47,920 [wrapper] ==== pilot stdout END ====
[2025-10-12 22:25:47] 2025-10-12 20:25:47,922 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 22:25:47] 2025-10-12 20:25:47,924 [wrapper] pilotpid: 2876336
[2025-10-12 22:25:47] 2025-10-12 20:25:47,927 [wrapper] Pilot exit status: 0
[2025-10-12 22:25:47] 2025-10-12 20:25:47,934 [wrapper] pandaids: 6839162143
[2025-10-12 22:25:47] 2025-10-12 20:25:47,950 [wrapper] cleanup supervisor_pilot 2894622 2876337
[2025-10-12 22:25:47] 2025-10-12 20:25:47,952 [wrapper] Test setup, not cleaning
[2025-10-12 22:25:47] 2025-10-12 20:25:47,954 [wrapper] apfmon messages muted
[2025-10-12 22:25:47] 2025-10-12 20:25:47,957 [wrapper] ==== wrapper stdout END ====
[2025-10-12 22:25:47] 2025-10-12 20:25:47,959 [wrapper] ==== wrapper stderr END ====
[2025-10-12 22:25:47]  *** Error codes and diagnostics ***
[2025-10-12 22:25:47]     "exeErrorCode": 0,
[2025-10-12 22:25:47]     "exeErrorDiag": "",
[2025-10-12 22:25:47]     "pilotErrorCode": 0,
[2025-10-12 22:25:47]     "pilotErrorDiag": "",
[2025-10-12 22:25:47]  *** Listing of results directory ***
[2025-10-12 22:25:47] total 414440
[2025-10-12 22:25:47] -rw-r--r-- 1 boinc boinc      5112 Oct 12 01:08 queuedata.json
[2025-10-12 22:25:47] -rwx------ 1 boinc boinc     36292 Oct 12 01:09 runpilot2-wrapper.sh
[2025-10-12 22:25:47] -rw-r--r-- 1 boinc boinc    557409 Oct 12 01:09 pilot3.tar.gz
[2025-10-12 22:25:47] -rw-r--r-- 1 boinc boinc       100 Oct 12 21:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 22:25:47] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 21:00 run_atlas
[2025-10-12 22:25:47] -rw-r--r-- 1 boinc boinc       105 Oct 12 21:00 job.xml
[2025-10-12 22:25:47] -rw-r--r-- 2 boinc boinc 221895083 Oct 12 21:00 EVNT.46676267._001304.pool.root.1
[2025-10-12 22:25:47] -rw-r--r-- 2 boinc boinc    569680 Oct 12 21:00 input.tar.gz
[2025-10-12 22:25:47] -rw-r--r-- 2 boinc boinc     15120 Oct 12 21:00 start_atlas.sh
[2025-10-12 22:25:47] drwxrwx--x 2 boinc boinc      4096 Oct 12 21:00 shared
[2025-10-12 22:25:47] -rw-r--r-- 1 boinc boinc         0 Oct 12 21:00 boinc_setup_complete
[2025-10-12 22:25:47] -rw-r--r-- 1 boinc boinc      6439 Oct 12 21:00 init_data.xml
[2025-10-12 22:25:47] -rw-r--r-- 1 boinc boinc         0 Oct 12 21:00 boinc_lockfile
[2025-10-12 22:25:47] -rw-r--r-- 1 boinc boinc      2550 Oct 12 21:00 pandaJob.out
[2025-10-12 22:25:47] -rw------- 1 boinc boinc    975528 Oct 12 21:00 agis_schedconf.cvmfs.json
[2025-10-12 22:25:47] -rw------- 1 boinc boinc   1560580 Oct 12 21:00 agis_ddmendpoints.agis.ALL.json
[2025-10-12 22:25:47] drwx------ 5 boinc boinc      4096 Oct 12 21:00 pilot3
[2025-10-12 22:25:47] -rw------- 1 boinc boinc 196625443 Oct 12 22:24 HITS.46676269._066750.pool.root.1
[2025-10-12 22:25:47] -rw-r--r-- 1 boinc boinc       529 Oct 12 22:24 boinc_task_state.xml
[2025-10-12 22:25:47] -rw------- 1 boinc boinc      1033 Oct 12 22:24 memory_monitor_summary.json
[2025-10-12 22:25:47] -rw------- 1 boinc boinc        95 Oct 12 22:24 pilot_heartbeat.json
[2025-10-12 22:25:47] -rw------- 1 boinc boinc    243956 Oct 12 22:25 log.46676269._066750.job.log.tgz.1
[2025-10-12 22:25:47] -rw------- 1 boinc boinc      7770 Oct 12 22:25 heartbeat.json
[2025-10-12 22:25:47] -rw-r--r-- 1 boinc boinc      8192 Oct 12 22:25 boinc_mmap_file
[2025-10-12 22:25:47] -rw-r--r-- 1 boinc boinc        27 Oct 12 22:25 wrapper_checkpoint.txt
[2025-10-12 22:25:47] -rw------- 1 boinc boinc      4938 Oct 12 22:25 pilotlog.txt
[2025-10-12 22:25:47] -rw------- 1 boinc boinc    744625 Oct 12 22:25 log.46676269._066750.job.log.1
[2025-10-12 22:25:47] -rw------- 1 boinc boinc       357 Oct 12 22:25 output.list
[2025-10-12 22:25:47] -rw-r--r-- 1 boinc boinc       620 Oct 12 22:25 runtime_log
[2025-10-12 22:25:47] -rw------- 1 boinc boinc   1003520 Oct 12 22:25 result.tar.gz
[2025-10-12 22:25:47] -rw-r--r-- 1 boinc boinc      8782 Oct 12 22:25 runtime_log.err
[2025-10-12 22:25:47] -rw------- 1 boinc boinc       659 Oct 12 22:25 Oa8KDmOtxR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmRvhNDmgrYERm.diag
[2025-10-12 22:25:47] -rw-r--r-- 1 boinc boinc     11849 Oct 12 22:25 stderr.txt
[2025-10-12 22:25:48] HITS file was successfully produced:
[2025-10-12 22:25:48] -rw------- 1 boinc boinc 196625443 Oct 12 22:24 shared/HITS.pool.root.1
[2025-10-12 22:25:48]  *** Contents of shared directory: ***
[2025-10-12 22:25:48] total 410280
[2025-10-12 22:25:48] -rw-r--r-- 2 boinc boinc 221895083 Oct 12 21:00 ATLAS.root_0
[2025-10-12 22:25:48] -rw-r--r-- 2 boinc boinc    569680 Oct 12 21:00 input.tar.gz
[2025-10-12 22:25:48] -rw-r--r-- 2 boinc boinc     15120 Oct 12 21:00 start_atlas.sh
[2025-10-12 22:25:48] -rw------- 1 boinc boinc 196625443 Oct 12 22:24 HITS.pool.root.1
[2025-10-12 22:25:48] -rw------- 1 boinc boinc   1003520 Oct 12 22:25 result.tar.gz
22:25:49 (2872621): run_atlas exited; CPU time 14576.010113
22:25:49 (2872621): called boinc_finish(0)

</stderr_txt>
]]>

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