Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:40:18 (542766): wrapper (7.7.26015): starting
04:40:18 (542766): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 04:40:18] Arguments: --nthreads 8
[2025-10-12 04:40:18] Threads: 8
[2025-10-12 04:40:18] Checking for CVMFS
[2025-10-12 04:40:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 04:40:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 04:40:20] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 04:40:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 04:40:20] 2.13.1.0 5421 5449 110540 151613 2 144 39858193 40960000 11441 16776704 0 8464992 99.879 2008221 35247 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 04:40:20] CVMFS is ok
[2025-10-12 04:40:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 04:40:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 04:40:20] Further information can be found at the LHC@home message board.
[2025-10-12 04:40:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 04:40:20] Checking for apptainer binary...
[2025-10-12 04:40:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 04:40:20] Running /usr/bin/apptainer --version
[2025-10-12 04:40:21] apptainer version 1.4.3-1.el9
[2025-10-12 04:40:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 04:40:22] c-210-37-1.aglt2.org
[2025-10-12 04:40:22] apptainer works
[2025-10-12 04:40:22] Set ATHENA_PROC_NUMBER=8
[2025-10-12 04:40:22] Set ATHENA_CORE_NUMBER=8
[2025-10-12 04:40:22] Starting ATLAS job with PandaID=6839083925
[2025-10-12 04:40:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 09:22:04]  *** The last 200 lines of the pilot log: ***
[2025-10-12 09:22:05] 2025-10-12 13:20:58,910 | INFO     | sum of square deviations: 6308378039.941393
[2025-10-12 09:22:05] 2025-10-12 13:20:58,943 | INFO     | sum of deviations: -48765143277.703316
[2025-10-12 09:22:05] 2025-10-12 13:20:58,943 | INFO     | mean x: 1760266879.6520147
[2025-10-12 09:22:05] 2025-10-12 13:20:58,943 | INFO     | mean y: 2477054.824175824
[2025-10-12 09:22:05] 2025-10-12 13:20:58,943 | INFO     | -- intersect: 13609725391.834702
[2025-10-12 09:22:05] 2025-10-12 13:20:58,943 | INFO     | intersect: 13609725391.834702
[2025-10-12 09:22:05] 2025-10-12 13:20:58,944 | INFO     | chi2: 4.753825265234545
[2025-10-12 09:22:05] 2025-10-12 13:20:58,944 | INFO     | sum of square deviations: 5968091062.776099
[2025-10-12 09:22:05] 2025-10-12 13:20:58,978 | INFO     | sum of deviations: 19612292876.044758
[2025-10-12 09:22:05] 2025-10-12 13:20:58,978 | INFO     | mean x: 1760266727.164179
[2025-10-12 09:22:05] 2025-10-12 13:20:58,978 | INFO     | mean y: 2507585.567164179
[2025-10-12 09:22:05] 2025-10-12 13:20:58,983 | INFO     | -- intersect: -5782066783.350407
[2025-10-12 09:22:05] 2025-10-12 13:20:58,983 | INFO     | intersect: -5782066783.350407
[2025-10-12 09:22:05] 2025-10-12 13:20:58,984 | INFO     | chi2: 1.9628427147051897
[2025-10-12 09:22:05] 2025-10-12 13:20:58,984 | INFO     | current chi2=1.9628427147051897 (change=58.71024690243119 %)
[2025-10-12 09:22:05] 2025-10-12 13:20:58,985 | INFO     | sum of square deviations: 5640269435.528532
[2025-10-12 09:22:05] 2025-10-12 13:20:58,979 | INFO     | time since job start (16772s) is within the limit (172800.0s)
[2025-10-12 09:22:05] 2025-10-12 13:20:58,992 | INFO     | 16779s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-12 09:22:05] 2025-10-12 13:20:58,991 | INFO     | sum of deviations: 19224599044.307987
[2025-10-12 09:22:05] 2025-10-12 13:20:58,992 | INFO     | mean x: 1760266574.676806
[2025-10-12 09:22:05] 2025-10-12 13:20:58,992 | INFO     | mean y: 2507405.5095057036
[2025-10-12 09:22:05] 2025-10-12 13:20:58,993 | INFO     | -- intersect: -5997280281.244494
[2025-10-12 09:22:05] 2025-10-12 13:20:58,993 | INFO     | intersect: -5997280281.244494
[2025-10-12 09:22:05] 2025-10-12 13:20:58,993 | INFO     | chi2: 1.9635697869562279
[2025-10-12 09:22:05] 2025-10-12 13:20:58,994 | INFO     | current chi2=1.9635697869562279 (change=-0.03704179889662675 %)
[2025-10-12 09:22:05] 2025-10-12 13:20:58,994 | INFO     | right removable region: 262
[2025-10-12 09:22:05] 2025-10-12 13:20:58,994 | INFO     | sum of square deviations: 5967982482.776098
[2025-10-12 09:22:05] 2025-10-12 13:20:59,001 | INFO     | sum of deviations: -95637551175.76117
[2025-10-12 09:22:05] 2025-10-12 13:20:59,001 | INFO     | mean x: 1760267032.164179
[2025-10-12 09:22:05] 2025-10-12 13:20:59,001 | INFO     | mean y: 2497903.1082089553
[2025-10-12 09:22:05] 2025-10-12 13:20:59,001 | INFO     | -- intersect: 28210963470.40281
[2025-10-12 09:22:05] 2025-10-12 13:20:59,001 | INFO     | intersect: 28210963470.40281
[2025-10-12 09:22:05] 2025-10-12 13:20:59,002 | INFO     | chi2: 3.143654373164402
[2025-10-12 09:22:05] 2025-10-12 13:20:59,002 | INFO     | current chi2=3.143654373164402 (change=33.871057563801735 %)
[2025-10-12 09:22:05] 2025-10-12 13:20:59,003 | INFO     | sum of square deviations: 5640085338.220512
[2025-10-12 09:22:05] 2025-10-12 13:20:59,010 | INFO     | sum of deviations: -96886206824.16357
[2025-10-12 09:22:05] 2025-10-12 13:20:59,010 | INFO     | mean x: 1760267184.6692016
[2025-10-12 09:22:05] 2025-10-12 13:20:59,010 | INFO     | mean y: 2498464.7452471484
[2025-10-12 09:22:05] 2025-10-12 13:20:59,010 | INFO     | -- intersect: 30240624360.453197
[2025-10-12 09:22:05] 2025-10-12 13:20:59,011 | INFO     | intersect: 30240624360.453197
[2025-10-12 09:22:05] 2025-10-12 13:20:59,011 | INFO     | chi2: 3.127252565043335
[2025-10-12 09:22:05] 2025-10-12 13:20:59,011 | INFO     | current chi2=3.127252565043335 (change=0.5217433653355794 %)
[2025-10-12 09:22:05] 2025-10-12 13:20:59,016 | INFO     | left removable region: 20
[2025-10-12 09:22:05] 2025-10-12 13:20:59,016 | INFO     | sum of square deviations: 4393967174.479314
[2025-10-12 09:22:05] 2025-10-12 13:20:59,019 | INFO     | sum of deviations: -15004183338.057848
[2025-10-12 09:22:05] 2025-10-12 13:20:59,019 | INFO     | mean x: 1760267154.198347
[2025-10-12 09:22:05] 2025-10-12 13:20:59,024 | INFO     | mean y: 2523017.355371901
[2025-10-12 09:22:05] 2025-10-12 13:20:59,024 | INFO     | -- intersect: 6013348782.953654
[2025-10-12 09:22:05] 2025-10-12 13:20:59,024 | INFO     | intersect: 6013348782.953654
[2025-10-12 09:22:05] 2025-10-12 13:20:59,025 | INFO     | chi2: 0.20691620889474535
[2025-10-12 09:22:05] 2025-10-12 13:20:59,025 | INFO     | -- intersect: 6013348782.953654
[2025-10-12 09:22:05] 2025-10-12 13:20:59,025 | INFO     | current memory leak: -3.41 B/s (using 242 data points, chi2=0.21)
[2025-10-12 09:22:05] 2025-10-12 13:20:59,026 | INFO     | could have reported an average CPU frequency of 2491 MHz (13 samples)
[2025-10-12 09:22:05] 2025-10-12 13:20:59,026 | INFO     | ..............................
[2025-10-12 09:22:05] 2025-10-12 13:20:59,027 | INFO     | . Timing measurements:
[2025-10-12 09:22:05] 2025-10-12 13:20:59,027 | INFO     | . get job = 0 s
[2025-10-12 09:22:05] 2025-10-12 13:20:59,027 | INFO     | . initial setup = 6 s
[2025-10-12 09:22:05] 2025-10-12 13:20:59,027 | INFO     | . payload setup = 23 s
[2025-10-12 09:22:05] 2025-10-12 13:20:59,027 | INFO     | . stage-in = 0 s
[2025-10-12 09:22:05] 2025-10-12 13:20:59,027 | INFO     | . payload execution = 16648 s
[2025-10-12 09:22:05] 2025-10-12 13:20:59,027 | INFO     | . stage-out = 5 s
[2025-10-12 09:22:05] 2025-10-12 13:20:59,027 | INFO     | . log creation = 0 s
[2025-10-12 09:22:05] 2025-10-12 13:20:59,027 | INFO     | ..............................
[2025-10-12 09:22:05] 2025-10-12 13:20:59,278 | INFO     | 
[2025-10-12 09:22:05] 2025-10-12 13:20:59,279 | INFO     | job summary report
[2025-10-12 09:22:05] 2025-10-12 13:20:59,279 | INFO     | --------------------------------------------------
[2025-10-12 09:22:05] 2025-10-12 13:20:59,279 | INFO     | PanDA job id: 6839083925
[2025-10-12 09:22:05] 2025-10-12 13:20:59,279 | INFO     | task id: 46676269
[2025-10-12 09:22:05] 2025-10-12 13:20:59,279 | INFO     | errors: (none)
[2025-10-12 09:22:05] 2025-10-12 13:20:59,279 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 09:22:05] 2025-10-12 13:20:59,280 | INFO     | pilot state: finished 
[2025-10-12 09:22:05] 2025-10-12 13:20:59,280 | INFO     | transexitcode: 0
[2025-10-12 09:22:05] 2025-10-12 13:20:59,305 | INFO     | exeerrorcode: 0
[2025-10-12 09:22:05] 2025-10-12 13:20:59,305 | INFO     | exeerrordiag: 
[2025-10-12 09:22:05] 2025-10-12 13:20:59,305 | INFO     | exitcode: 0
[2025-10-12 09:22:05] 2025-10-12 13:20:59,305 | INFO     | exitmsg: OK
[2025-10-12 09:22:05] 2025-10-12 13:20:59,305 | INFO     | cpuconsumptiontime: 44546 s
[2025-10-12 09:22:05] 2025-10-12 13:20:59,305 | INFO     | nevents: 400
[2025-10-12 09:22:05] 2025-10-12 13:20:59,306 | INFO     | neventsw: 0
[2025-10-12 09:22:05] 2025-10-12 13:20:59,306 | INFO     | pid: 561357
[2025-10-12 09:22:05] 2025-10-12 13:20:59,306 | INFO     | pgrp: 561357
[2025-10-12 09:22:05] 2025-10-12 13:20:59,306 | INFO     | corecount: 8
[2025-10-12 09:22:05] 2025-10-12 13:20:59,306 | INFO     | event service: False
[2025-10-12 09:22:05] 2025-10-12 13:20:59,306 | INFO     | sizes: {0: 2348029, 1: 2348630, 2: 2348742, 3: 2348913, 4: 2348969, 15: 2348969, 26: 2349125, 27: 2349415, 37: 2349443, 16677: 2380871, 16678: 2380870, 16684: 2390
[2025-10-12 09:22:05] 2025-10-12 13:20:59,306 | INFO     | --------------------------------------------------
[2025-10-12 09:22:05] 2025-10-12 13:20:59,306 | INFO     | 
[2025-10-12 09:22:05] 2025-10-12 13:20:59,306 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 09:22:05] 2025-10-12 13:20:59,422 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 09:22:05] 2025-10-12 13:20:59,423 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 09:22:05] 2025-10-12 13:20:59,423 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 09:22:05] 2025-10-12 13:20:59,423 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 09:22:05] 2025-10-12 13:20:59,423 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 09:22:05] 2025-10-12 13:20:59,424 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 09:22:05] 2025-10-12 13:20:59,424 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 09:22:05] 2025-10-12 13:20:59,424 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 09:22:05] 2025-10-12 13:20:59,424 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 09:22:05] 2025-10-12 13:20:59,424 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 09:22:05] 2025-10-12 13:20:59,424 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 09:22:05] 2025-10-12 13:20:59,424 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 09:22:05] 2025-10-12 13:20:59,425 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 09:22:05] 2025-10-12 13:20:59,425 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 09:22:05] 2025-10-12 13:20:59,425 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 09:22:05] 2025-10-12 13:20:59,425 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 09:22:05] 2025-10-12 13:20:59,425 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 09:22:05] 2025-10-12 13:20:59,425 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 09:22:05] 2025-10-12 13:20:59,431 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 09:22:05] 2025-10-12 13:20:59,431 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 09:22:05] 2025-10-12 13:20:59,431 | INFO     | job 6839083925 has completed (purged errors)
[2025-10-12 09:22:05] 2025-10-12 13:20:59,431 | INFO     | overall cleanup function is called
[2025-10-12 09:22:05] 2025-10-12 13:21:00,499 | INFO     | --- collectZombieJob: --- 10, [561357]
[2025-10-12 09:22:05] 2025-10-12 13:21:00,500 | INFO     | zombie collector waiting for pid 561357
[2025-10-12 09:22:05] 2025-10-12 13:21:00,500 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 09:22:05] 2025-10-12 13:21:00,500 | INFO     | collected zombie processes
[2025-10-12 09:22:05] 2025-10-12 13:21:00,500 | INFO     | will attempt to kill all subprocesses of pid=561357
[2025-10-12 09:22:05] 2025-10-12 13:21:00,855 | INFO     | PID=554508 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 09:22:05] 2025-10-12 13:21:00,855 | INFO     | .. there are 10 such processes running
[2025-10-12 09:22:05] 2025-10-12 13:21:01,977 | INFO     | process IDs to be killed: [561357] (in reverse order)
[2025-10-12 09:22:05] 2025-10-12 13:21:02,136 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 09:22:05] 2025-10-12 13:21:02,137 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 09:22:05] 2025-10-12 13:21:02,149 | INFO     | did not find any defunct processes belonging to 561357
[2025-10-12 09:22:05] 2025-10-12 13:21:02,162 | INFO     | did not find any defunct processes belonging to 561357
[2025-10-12 09:22:05] 2025-10-12 13:21:02,173 | INFO     | ready for new job
[2025-10-12 09:22:05] 2025-10-12 13:21:02,173 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 09:22:05] 2025-10-12 13:21:02,234 | INFO     | ***************************************
[2025-10-12 09:22:05] 2025-10-12 13:21:02,234 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 09:22:05] 2025-10-12 13:21:02,234 | INFO     | ***************************************
[2025-10-12 09:22:05] 2025-10-12 13:21:02,234 | INFO     | 
[2025-10-12 09:22:05] 2025-10-12 13:21:02,258 | INFO     | architecture information:
[2025-10-12 09:22:05] 2025-10-12 13:21:02,262 | INFO     | executing command: cat /etc/os-release
[2025-10-12 09:22:05] 2025-10-12 13:21:02,423 | INFO     | cat /etc/os-release:
[2025-10-12 09:22:05] NAME="CentOS Linux"
[2025-10-12 09:22:05] VERSION="7 (Core)"
[2025-10-12 09:22:05] ID="centos"
[2025-10-12 09:22:05] ID_LIKE="rhel fedora"
[2025-10-12 09:22:05] VERSION_ID="7"
[2025-10-12 09:22:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 09:22:05] ANSI_COLOR="0;31"
[2025-10-12 09:22:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 09:22:05] HOME_URL="https://www.centos.org/"
[2025-10-12 09:22:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 09:22:05] 
[2025-10-12 09:22:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 09:22:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 09:22:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 09:22:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 09:22:05] 
[2025-10-12 09:22:05] 2025-10-12 13:21:02,423 | INFO     | ***************************************
[2025-10-12 09:22:05] 2025-10-12 13:21:02,928 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 09:22:05] 2025-10-12 13:21:03,073 | INFO     | sufficient remaining disk space (74275880960 B)
[2025-10-12 09:22:05] 2025-10-12 13:21:03,074 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 09:22:05] 2025-10-12 13:21:03,074 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 09:22:05] 2025-10-12 13:21:03,074 | INFO     | update_server=False
[2025-10-12 09:22:05] 2025-10-12 13:21:03,074 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 09:22:05] 2025-10-12 13:21:03,126 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:22:05] 2025-10-12 13:21:03,126 | INFO     | aborting loop
[2025-10-12 09:22:05] 2025-10-12 13:21:03,177 | INFO     | all data control threads have been joined
[2025-10-12 09:22:05] 2025-10-12 13:21:03,414 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 09:22:05] 2025-10-12 13:21:03,814 | INFO     | all payload control threads have been joined
[2025-10-12 09:22:05] 2025-10-12 13:21:03,819 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 09:22:05] 2025-10-12 13:21:04,080 | INFO     | [job] retrieve thread has finished
[2025-10-12 09:22:05] 2025-10-12 13:21:04,161 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 09:22:05] 2025-10-12 13:21:04,179 | INFO     | [job] job monitor thread has finished
[2025-10-12 09:22:05] 2025-10-12 13:21:04,182 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 09:22:05] 2025-10-12 13:21:04,182 | INFO     | [data] control thread has finished
[2025-10-12 09:22:05] 2025-10-12 13:21:04,323 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:22:05] 2025-10-12 13:21:04,355 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 09:22:05] 2025-10-12 13:21:04,422 | INFO     | [payload] failed_post thread has finished
[2025-10-12 09:22:05] 2025-10-12 13:21:04,628 | INFO     | all job control threads have been joined
[2025-10-12 09:22:05] 2025-10-12 13:21:04,647 | INFO     | [payload] validate_post thread has finished
[2025-10-12 09:22:05] 2025-10-12 13:21:04,841 | INFO     | [payload] control thread has finished
[2025-10-12 09:22:05] 2025-10-12 13:21:05,126 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 09:22:05] 2025-10-12 13:21:05,198 | INFO     | [job] validate thread has finished
[2025-10-12 09:22:05] 2025-10-12 13:21:05,192 | INFO     | [data] copytool_in thread has finished
[2025-10-12 09:22:05] 2025-10-12 13:21:05,329 | INFO     | [job] queue monitor thread has finished
[2025-10-12 09:22:05] 2025-10-12 13:21:05,443 | INFO     | [data] copytool_out thread has finished
[2025-10-12 09:22:05] 2025-10-12 13:21:05,638 | INFO     | [job] control thread has finished
[2025-10-12 09:22:05] 2025-10-12 13:21:07,858 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 09:22:05] 2025-10-12 13:21:33,543 | INFO     | PID=554508 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 09:22:05] 2025-10-12 13:21:33,544 | INFO     | .. there are 10 such processes running
[2025-10-12 09:22:05] 2025-10-12 13:21:33,545 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 09:22:05] 2025-10-12 13:21:33,545 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 09:22:05] 2025-10-12 13:21:33,545 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 09:22:05] 2025-10-12 13:21:55,681 | INFO     | [monitor] cgroup control has ended
[2025-10-12 09:22:05] 2025-10-12 13:21:57,363 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140421527127872)>', '<ExcThread(monitor, started 140421044881152)>']
[2025-10-12 09:22:05] 2025-10-12 13:21:57,740 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 09:22:05] 2025-10-12 13:21:57,740 | INFO     | [monitor] control thread has ended
[2025-10-12 09:22:05] 2025-10-12 13:22:02,390 | INFO     | all workflow threads have been joined
[2025-10-12 09:22:05] 2025-10-12 13:22:02,391 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 09:22:05] 2025-10-12 13:22:02,399 | INFO     | traces error code: 0
[2025-10-12 09:22:05] 2025-10-12 13:22:02,399 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 09:22:05] 2025-10-12 13:22:04,146 [wrapper] ==== pilot stdout END ====
[2025-10-12 09:22:05] 2025-10-12 13:22:04,204 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 09:22:05] 2025-10-12 13:22:04,258 [wrapper] pilotpid: 554508
[2025-10-12 09:22:05] 2025-10-12 13:22:04,290 [wrapper] Pilot exit status: 0
[2025-10-12 09:22:05] 2025-10-12 13:22:04,403 [wrapper] pandaids: 6839083925
[2025-10-12 09:22:05] 2025-10-12 13:22:04,485 [wrapper] cleanup supervisor_pilot  966541 554509
[2025-10-12 09:22:05] 2025-10-12 13:22:04,489 [wrapper] Test setup, not cleaning
[2025-10-12 09:22:05] 2025-10-12 13:22:04,494 [wrapper] apfmon messages muted
[2025-10-12 09:22:05] 2025-10-12 13:22:04,498 [wrapper] ==== wrapper stdout END ====
[2025-10-12 09:22:05] 2025-10-12 13:22:04,501 [wrapper] ==== wrapper stderr END ====
[2025-10-12 09:22:05]  *** Error codes and diagnostics ***
[2025-10-12 09:22:05]     "exeErrorCode": 0,
[2025-10-12 09:22:05]     "exeErrorDiag": "",
[2025-10-12 09:22:05]     "pilotErrorCode": 0,
[2025-10-12 09:22:05]     "pilotErrorDiag": "",
[2025-10-12 09:22:05]  *** Listing of results directory ***
[2025-10-12 09:22:05] total 410512
[2025-10-12 09:22:05] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 18:51 pilot3.tar.gz
[2025-10-12 09:22:05] -rwx------. 1 boincer umatlas     36292 Oct 11 19:08 runpilot2-wrapper.sh
[2025-10-12 09:22:05] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 19:08 queuedata.json
[2025-10-12 09:22:05] -rw-r--r--. 1 boincer umatlas       100 Oct 12 04:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 09:22:05] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 04:40 run_atlas
[2025-10-12 09:22:05] -rw-r--r--. 1 boincer umatlas       105 Oct 12 04:40 job.xml
[2025-10-12 09:22:05] -rw-r--r--. 2 boincer umatlas 222304785 Oct 12 04:40 EVNT.46676267._002690.pool.root.1
[2025-10-12 09:22:05] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 04:40 start_atlas.sh
[2025-10-12 09:22:05] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 04:40 shared
[2025-10-12 09:22:05] -rw-r--r--. 2 boincer umatlas    569676 Oct 12 04:40 input.tar.gz
[2025-10-12 09:22:05] -rw-r--r--. 1 boincer umatlas         0 Oct 12 04:40 boinc_lockfile
[2025-10-12 09:22:05] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 04:40 pandaJob.out
[2025-10-12 09:22:05] -rw-------. 1 boincer umatlas    975520 Oct 12 04:41 agis_schedconf.cvmfs.json
[2025-10-12 09:22:05] drwx------. 5 boincer umatlas      4096 Oct 12 04:41 pilot3
[2025-10-12 09:22:05] -rw-------. 1 boincer umatlas 189008010 Oct 12 09:15 HITS.46676269._066689.pool.root.1
[2025-10-12 09:22:05] -rw-r--r--. 1 boincer umatlas       531 Oct 12 09:15 boinc_task_state.xml
[2025-10-12 09:22:05] -rw-------. 1 boincer umatlas      1044 Oct 12 09:20 memory_monitor_summary.json
[2025-10-12 09:22:05] -rw-------. 1 boincer umatlas   1560580 Oct 12 09:20 agis_ddmendpoints.agis.ALL.json
[2025-10-12 09:22:05] -rw-------. 1 boincer umatlas    476070 Oct 12 09:20 log.46676269._066689.job.log.tgz.1
[2025-10-12 09:22:05] -rw-------. 1 boincer umatlas      7832 Oct 12 09:20 heartbeat.json
[2025-10-12 09:22:05] -rw-r--r--. 1 boincer umatlas      6840 Oct 12 09:21 init_data.xml
[2025-10-12 09:22:05] -rw-------. 1 boincer umatlas        95 Oct 12 09:21 pilot_heartbeat.json
[2025-10-12 09:22:05] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 09:21 boinc_mmap_file
[2025-10-12 09:22:05] -rw-r--r--. 1 boincer umatlas        28 Oct 12 09:21 wrapper_checkpoint.txt
[2025-10-12 09:22:05] -rw-------. 1 boincer umatlas      4823 Oct 12 09:22 pilotlog.txt
[2025-10-12 09:22:05] -rw-------. 1 boincer umatlas   2100368 Oct 12 09:22 log.46676269._066689.job.log.1
[2025-10-12 09:22:05] -rw-------. 1 boincer umatlas       357 Oct 12 09:22 output.list
[2025-10-12 09:22:05] -rw-r--r--. 1 boincer umatlas       620 Oct 12 09:22 runtime_log
[2025-10-12 09:22:05] -rw-------. 1 boincer umatlas   2590720 Oct 12 09:22 result.tar.gz
[2025-10-12 09:22:05] -rw-------. 1 boincer umatlas       658 Oct 12 09:22 SXxKDmJsxR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmuuhNDmdbV6wn.diag
[2025-10-12 09:22:05] -rw-r--r--. 1 boincer umatlas      8714 Oct 12 09:22 runtime_log.err
[2025-10-12 09:22:05] -rw-r--r--. 1 boincer umatlas     21203 Oct 12 09:22 stderr.txt
[2025-10-12 09:22:05] HITS file was successfully produced:
[2025-10-12 09:22:05] -rw-------. 1 boincer umatlas 189008010 Oct 12 09:15 shared/HITS.pool.root.1
[2025-10-12 09:22:05]  *** Contents of shared directory: ***
[2025-10-12 09:22:05] total 404788
[2025-10-12 09:22:05] -rw-r--r--. 2 boincer umatlas 222304785 Oct 12 04:40 ATLAS.root_0
[2025-10-12 09:22:05] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 04:40 start_atlas.sh
[2025-10-12 09:22:05] -rw-r--r--. 2 boincer umatlas    569676 Oct 12 04:40 input.tar.gz
[2025-10-12 09:22:05] -rw-------. 1 boincer umatlas 189008010 Oct 12 09:15 HITS.pool.root.1
[2025-10-12 09:22:05] -rw-------. 1 boincer umatlas   2590720 Oct 12 09:22 result.tar.gz
09:22:07 (542766): run_atlas exited; CPU time 44938.028497
09:22:07 (542766): called boinc_finish(0)

</stderr_txt>
]]>

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