Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:01:41 (3274515): wrapper (7.7.26015): starting
10:01:41 (3274515): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 10:01:41] Arguments: --nthreads 12
[2025-10-12 10:01:41] Threads: 12
[2025-10-12 10:01:41] Checking for CVMFS
[2025-10-12 10:01:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 10:01:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 10:01:41] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 10:01:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 10:01:41] 2.13.2.0 8715 28781 230692 151612 3 188 40192946 46080000 6454 130560 0 193237186 99.886 56021904 21594 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-10-12 10:01:41] CVMFS is ok
[2025-10-12 10:01:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 10:01:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 10:01:41] Further information can be found at the LHC@home message board.
[2025-10-12 10:01:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 10:01:41] Checking for apptainer binary...
[2025-10-12 10:01:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 10:01:41] Running /usr/bin/apptainer --version
[2025-10-12 10:01:41] apptainer version 1.4.2-1.el9
[2025-10-12 10:01:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 10:01:42] mff2104.farm.particle.cz
[2025-10-12 10:01:42] apptainer works
[2025-10-12 10:01:42] Set ATHENA_PROC_NUMBER=12
[2025-10-12 10:01:42] Set ATHENA_CORE_NUMBER=12
[2025-10-12 10:01:42] Starting ATLAS job with PandaID=6838633015
[2025-10-12 10:01:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 10:59:17]  *** The last 200 lines of the pilot log: ***
[2025-10-12 10:59:17]  replicas=None
[2025-10-12 10:59:17]  scope=mc23_13p6TeV
[2025-10-12 10:59:17]  status=None
[2025-10-12 10:59:17]  status_code=0
[2025-10-12 10:59:17]  storage_token=
[2025-10-12 10:59:17]  surl=/scratch/.boinc/slots/6/PanDA_Pilot-6838633015/log.46676269._061224.job.log.tgz.1
[2025-10-12 10:59:17]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ab/2d/log.46676269._061224.job.log.tgz.1
[2025-10-12 10:59:17]  workdir=None
[2025-10-12 10:59:17] ]
[2025-10-12 10:59:17] 2025-10-12 08:58:36,957 | INFO     | transferring file log.46676269._061224.job.log.tgz.1 from /scratch/.boinc/slots/6/PanDA_Pilot-6838633015/log.46676269._061224.job.log.tgz.1 to /scratch/.boinc/slot
[2025-10-12 10:59:17] 2025-10-12 08:58:36,957 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/6/PanDA_Pilot-6838633015/log.46676269._061224.job.log.tgz.1 /scratch/.boinc/slots/6/log.46676269._061224.j
[2025-10-12 10:59:17] 2025-10-12 08:58:36,980 | INFO     | adding to output.list: log.46676269._061224.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ab/2d/log.46676269._061224.job.log.tg
[2025-10-12 10:59:17] 2025-10-12 08:58:36,981 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 10:59:17] 2025-10-12 08:58:36,981 | INFO     | summary of transferred files:
[2025-10-12 10:59:17] 2025-10-12 08:58:36,981 | INFO     |  -- lfn=log.46676269._061224.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 10:59:17] 2025-10-12 08:58:36,981 | INFO     | stage-out finished correctly
[2025-10-12 10:59:17] 2025-10-12 08:58:37,334 | INFO     | monitor loop #245: job 0:6838633015 is in state 'finished'
[2025-10-12 10:59:17] 2025-10-12 08:58:37,334 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 10:59:17] 2025-10-12 08:58:37,612 | INFO     | time since job start (3403s) is within the limit (172800.0s)
[2025-10-12 10:59:17] 2025-10-12 08:58:38,195 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 10:59:17] 2025-10-12 08:58:39,396 | INFO     | job 6838633015 has state=finished
[2025-10-12 10:59:17] 2025-10-12 08:58:39,460 | INFO     | preparing for final server update for job 6838633015 in state='finished'
[2025-10-12 10:59:17] 2025-10-12 08:58:39,460 | INFO     | this job has now completed (state=finished)
[2025-10-12 10:59:17] 2025-10-12 08:58:39,461 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 10:59:17] 2025-10-12 08:58:39,461 | INFO     | log transfer has been attempted: DONE
[2025-10-12 10:59:17] 2025-10-12 08:58:39,461 | INFO     | job 6838633015 has finished - writing final server update
[2025-10-12 10:59:17] 2025-10-12 08:58:39,461 | INFO     | total number of processed events: 400 (read)
[2025-10-12 10:59:17] 2025-10-12 08:58:39,462 | INFO     | executing command: lscpu
[2025-10-12 10:59:17] 2025-10-12 08:58:39,541 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 10:59:17] 2025-10-12 08:58:39,618 | INFO     | time since job start (3405s) is within the limit (172800.0s)
[2025-10-12 10:59:17] 2025-10-12 08:58:39,837 | INFO     | monitor loop #246: job 0:6838633015 is in state 'finished'
[2025-10-12 10:59:17] 2025-10-12 08:58:39,838 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 10:59:17] 2025-10-12 08:58:41,624 | INFO     | time since job start (3407s) is within the limit (172800.0s)
[2025-10-12 10:59:17] 2025-10-12 08:58:42,341 | INFO     | monitor loop #247: job 0:6838633015 is in state 'finished'
[2025-10-12 10:59:17] 2025-10-12 08:58:42,341 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 10:59:17] 2025-10-12 08:58:43,630 | INFO     | time since job start (3409s) is within the limit (172800.0s)
[2025-10-12 10:59:17] 2025-10-12 08:58:44,513 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 10:59:17] 2025-10-12 08:58:44,527 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2744.540395833334
[2025-10-12 10:59:17] 2025-10-12 08:58:44,595 | INFO     | using path: /scratch/.boinc/slots/6/PanDA_Pilot-6838633015/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 10:59:17] 2025-10-12 08:58:44,595 | INFO     | extracted standard info from prmon json
[2025-10-12 10:59:17] 2025-10-12 08:58:44,595 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 10:59:17] 2025-10-12 08:58:44,595 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 10:59:17] 2025-10-12 08:58:44,596 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 10:59:17] 2025-10-12 08:58:44,596 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 10:59:17] 2025-10-12 08:58:44,597 | INFO     | fitting pss+swap vs Time
[2025-10-12 10:59:17] 2025-10-12 08:58:44,598 | INFO     | sum of square deviations: 36465800.0
[2025-10-12 10:59:17] 2025-10-12 08:58:44,598 | INFO     | sum of deviations: -152146139.00000003
[2025-10-12 10:59:17] 2025-10-12 08:58:44,598 | INFO     | mean x: 1760257913.0
[2025-10-12 10:59:17] 2025-10-12 08:58:44,598 | INFO     | mean y: 2702203.163265306
[2025-10-12 10:59:17] 2025-10-12 08:58:44,598 | INFO     | -- intersect: 7347020581.1269455
[2025-10-12 10:59:17] 2025-10-12 08:58:44,598 | INFO     | intersect: 7347020581.1269455
[2025-10-12 10:59:17] 2025-10-12 08:58:44,598 | INFO     | chi2: 0.0017446517504675293
[2025-10-12 10:59:17] 2025-10-12 08:58:44,599 | INFO     | -- intersect: 7347020581.1269455
[2025-10-12 10:59:17] 2025-10-12 08:58:44,599 | INFO     | current memory leak: -4.17 B/s (using 49 data points, chi2=0.00)
[2025-10-12 10:59:17] 2025-10-12 08:58:44,599 | INFO     | could have reported an average CPU frequency of 2747 MHz (5 samples)
[2025-10-12 10:59:17] 2025-10-12 08:58:44,599 | INFO     | ..............................
[2025-10-12 10:59:17] 2025-10-12 08:58:44,599 | INFO     | . Timing measurements:
[2025-10-12 10:59:17] 2025-10-12 08:58:44,599 | INFO     | . get job = 0 s
[2025-10-12 10:59:17] 2025-10-12 08:58:44,599 | INFO     | . initial setup = 1 s
[2025-10-12 10:59:17] 2025-10-12 08:58:44,599 | INFO     | . payload setup = 6 s
[2025-10-12 10:59:17] 2025-10-12 08:58:44,599 | INFO     | . stage-in = 0 s
[2025-10-12 10:59:17] 2025-10-12 08:58:44,600 | INFO     | . payload execution = 3374 s
[2025-10-12 10:59:17] 2025-10-12 08:58:44,600 | INFO     | . stage-out = 0 s
[2025-10-12 10:59:17] 2025-10-12 08:58:44,600 | INFO     | . log creation = 0 s
[2025-10-12 10:59:17] 2025-10-12 08:58:44,600 | INFO     | ..............................
[2025-10-12 10:59:17] 2025-10-12 08:58:44,736 | INFO     | 
[2025-10-12 10:59:17] 2025-10-12 08:58:44,736 | INFO     | job summary report
[2025-10-12 10:59:17] 2025-10-12 08:58:44,736 | INFO     | --------------------------------------------------
[2025-10-12 10:59:17] 2025-10-12 08:58:44,736 | INFO     | PanDA job id: 6838633015
[2025-10-12 10:59:17] 2025-10-12 08:58:44,736 | INFO     | task id: 46676269
[2025-10-12 10:59:17] 2025-10-12 08:58:44,736 | INFO     | errors: (none)
[2025-10-12 10:59:17] 2025-10-12 08:58:44,736 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 10:59:17] 2025-10-12 08:58:44,737 | INFO     | pilot state: finished 
[2025-10-12 10:59:17] 2025-10-12 08:58:44,737 | INFO     | transexitcode: 0
[2025-10-12 10:59:17] 2025-10-12 08:58:44,737 | INFO     | exeerrorcode: 0
[2025-10-12 10:59:17] 2025-10-12 08:58:44,737 | INFO     | exeerrordiag: 
[2025-10-12 10:59:17] 2025-10-12 08:58:44,737 | INFO     | exitcode: 0
[2025-10-12 10:59:17] 2025-10-12 08:58:44,737 | INFO     | exitmsg: OK
[2025-10-12 10:59:17] 2025-10-12 08:58:44,737 | INFO     | cpuconsumptiontime: 35480 s
[2025-10-12 10:59:17] 2025-10-12 08:58:44,737 | INFO     | nevents: 400
[2025-10-12 10:59:17] 2025-10-12 08:58:44,737 | INFO     | neventsw: 0
[2025-10-12 10:59:17] 2025-10-12 08:58:44,737 | INFO     | pid: 3286713
[2025-10-12 10:59:17] 2025-10-12 08:58:44,737 | INFO     | pgrp: 3286713
[2025-10-12 10:59:17] 2025-10-12 08:58:44,737 | INFO     | corecount: 12
[2025-10-12 10:59:17] 2025-10-12 08:58:44,738 | INFO     | event service: False
[2025-10-12 10:59:17] 2025-10-12 08:58:44,738 | INFO     | sizes: {0: 2348027, 1: 2348884, 7: 2349146, 12: 2349174, 3385: 2374862, 3386: 2383862, 3387: 2384046, 3394: 2384272}
[2025-10-12 10:59:17] 2025-10-12 08:58:44,738 | INFO     | --------------------------------------------------
[2025-10-12 10:59:17] 2025-10-12 08:58:44,738 | INFO     | 
[2025-10-12 10:59:17] 2025-10-12 08:58:44,738 | INFO     | executing command: ls -lF /scratch/.boinc/slots/6
[2025-10-12 10:59:17] 2025-10-12 08:58:44,761 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 10:59:17] 2025-10-12 08:58:44,762 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 10:59:17] 2025-10-12 08:58:44,762 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 10:59:17] 2025-10-12 08:58:44,762 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 10:59:17] 2025-10-12 08:58:44,762 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 10:59:17] 2025-10-12 08:58:44,762 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 10:59:17] 2025-10-12 08:58:44,762 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 10:59:17] 2025-10-12 08:58:44,762 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 10:59:17] 2025-10-12 08:58:44,762 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 10:59:17] 2025-10-12 08:58:44,763 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 10:59:17] 2025-10-12 08:58:44,763 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 10:59:17] 2025-10-12 08:58:44,763 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 10:59:17] 2025-10-12 08:58:44,763 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 10:59:17] 2025-10-12 08:58:44,763 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 10:59:17] 2025-10-12 08:58:44,763 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 10:59:17] 2025-10-12 08:58:44,763 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 10:59:17] 2025-10-12 08:58:44,763 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 10:59:17] 2025-10-12 08:58:44,763 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 10:59:17] 2025-10-12 08:58:44,763 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 10:59:17] 2025-10-12 08:58:44,763 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 10:59:17] 2025-10-12 08:58:44,764 | INFO     | job 6838633015 has completed (purged errors)
[2025-10-12 10:59:17] 2025-10-12 08:58:44,764 | INFO     | overall cleanup function is called
[2025-10-12 10:59:17] 2025-10-12 08:58:45,772 | INFO     | --- collectZombieJob: --- 10, [3286713]
[2025-10-12 10:59:17] 2025-10-12 08:58:45,772 | INFO     | zombie collector waiting for pid 3286713
[2025-10-12 10:59:17] 2025-10-12 08:58:45,773 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 10:59:17] 2025-10-12 08:58:45,773 | INFO     | collected zombie processes
[2025-10-12 10:59:17] 2025-10-12 08:58:45,773 | INFO     | will attempt to kill all subprocesses of pid=3286713
[2025-10-12 10:59:17] 2025-10-12 08:58:46,122 | INFO     | process IDs to be killed: [3286713] (in reverse order)
[2025-10-12 10:59:17] 2025-10-12 08:58:46,237 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 10:59:17] 2025-10-12 08:58:46,238 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 10:59:17] 2025-10-12 08:58:46,249 | INFO     | did not find any defunct processes belonging to 3286713
[2025-10-12 10:59:17] 2025-10-12 08:58:46,259 | INFO     | did not find any defunct processes belonging to 3286713
[2025-10-12 10:59:17] 2025-10-12 08:58:46,259 | INFO     | ready for new job
[2025-10-12 10:59:17] 2025-10-12 08:58:46,259 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 10:59:17] 2025-10-12 08:58:46,261 | INFO     | ***************************************
[2025-10-12 10:59:17] 2025-10-12 08:58:46,261 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 10:59:17] 2025-10-12 08:58:46,261 | INFO     | ***************************************
[2025-10-12 10:59:17] 2025-10-12 08:58:46,261 | INFO     | 
[2025-10-12 10:59:17] 2025-10-12 08:58:46,267 | INFO     | architecture information:
[2025-10-12 10:59:17] 2025-10-12 08:58:46,267 | INFO     | executing command: cat /etc/os-release
[2025-10-12 10:59:17] 2025-10-12 08:58:46,286 | INFO     | cat /etc/os-release:
[2025-10-12 10:59:17] NAME="CentOS Linux"
[2025-10-12 10:59:17] VERSION="7 (Core)"
[2025-10-12 10:59:17] ID="centos"
[2025-10-12 10:59:17] ID_LIKE="rhel fedora"
[2025-10-12 10:59:17] VERSION_ID="7"
[2025-10-12 10:59:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 10:59:17] ANSI_COLOR="0;31"
[2025-10-12 10:59:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 10:59:17] HOME_URL="https://www.centos.org/"
[2025-10-12 10:59:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 10:59:17] 
[2025-10-12 10:59:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 10:59:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 10:59:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 10:59:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 10:59:17] 
[2025-10-12 10:59:17] 2025-10-12 08:58:46,287 | INFO     | ***************************************
[2025-10-12 10:59:17] 2025-10-12 08:58:46,790 | INFO     | executing command: df -mP /scratch/.boinc/slots/6
[2025-10-12 10:59:17] 2025-10-12 08:58:46,814 | INFO     | sufficient remaining disk space (1681111646208 B)
[2025-10-12 10:59:17] 2025-10-12 08:58:46,815 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 10:59:17] 2025-10-12 08:58:46,815 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 10:59:17] 2025-10-12 08:58:46,815 | INFO     | update_server=False
[2025-10-12 10:59:17] 2025-10-12 08:58:46,815 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 10:59:17] 2025-10-12 08:58:46,816 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:59:17] 2025-10-12 08:58:46,816 | INFO     | aborting loop
[2025-10-12 10:59:17] 2025-10-12 08:58:47,142 | INFO     | all job control threads have been joined
[2025-10-12 10:59:17] 2025-10-12 08:58:47,205 | INFO     | all data control threads have been joined
[2025-10-12 10:59:17] 2025-10-12 08:58:47,584 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 10:59:17] 2025-10-12 08:58:47,821 | INFO     | [job] retrieve thread has finished
[2025-10-12 10:59:17] 2025-10-12 08:58:47,822 | INFO     | [job] job monitor thread has finished
[2025-10-12 10:59:17] 2025-10-12 08:58:48,039 | INFO     | all payload control threads have been joined
[2025-10-12 10:59:17] 2025-10-12 08:58:48,148 | INFO     | [job] control thread has finished
[2025-10-12 10:59:17] 2025-10-12 08:58:48,210 | INFO     | [data] control thread has finished
[2025-10-12 10:59:17] 2025-10-12 08:58:48,265 | INFO     | [payload] validate_post thread has finished
[2025-10-12 10:59:17] 2025-10-12 08:58:48,680 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 10:59:17] 2025-10-12 08:58:48,784 | INFO     | [data] copytool_in thread has finished
[2025-10-12 10:59:17] 2025-10-12 08:58:48,797 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 10:59:17] 2025-10-12 08:58:48,828 | INFO     | [job] validate thread has finished
[2025-10-12 10:59:17] 2025-10-12 08:58:48,924 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 10:59:17] 2025-10-12 08:58:48,939 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 10:59:17] 2025-10-12 08:58:49,045 | INFO     | [payload] control thread has finished
[2025-10-12 10:59:17] 2025-10-12 08:58:49,212 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 10:59:17] 2025-10-12 08:58:49,291 | INFO     | [payload] failed_post thread has finished
[2025-10-12 10:59:17] 2025-10-12 08:58:49,590 | INFO     | [data] copytool_out thread has finished
[2025-10-12 10:59:17] 2025-10-12 08:58:49,702 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:59:17] 2025-10-12 08:58:50,708 | INFO     | [job] queue monitor thread has finished
[2025-10-12 10:59:17] 2025-10-12 08:58:52,804 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 10:59:17] 2025-10-12 08:58:59,379 | INFO     | [monitor] cgroup control has ended
[2025-10-12 10:59:17] 2025-10-12 08:59:00,547 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140158987659072)>', '<ExcThread(monitor, started 140158624044800)>']
[2025-10-12 10:59:17] 2025-10-12 08:59:05,561 | INFO     | all workflow threads have been joined
[2025-10-12 10:59:17] 2025-10-12 08:59:05,562 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 10:59:17] 2025-10-12 08:59:05,562 | INFO     | traces error code: 0
[2025-10-12 10:59:17] 2025-10-12 08:59:05,563 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 10:59:17] 2025-10-12 08:59:17,157 | INFO     | PID=3279212 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 10:59:17] 2025-10-12 08:59:17,158 | INFO     | .. there are 8 such processes running
[2025-10-12 10:59:17] 2025-10-12 08:59:17,159 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 10:59:17] 2025-10-12 08:59:17,159 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 10:59:17] 2025-10-12 08:59:17,159 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 10:59:17] 2025-10-12 08:59:17,160 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 10:59:17] 2025-10-12 08:59:17,160 | INFO     | [monitor] control thread has ended
[2025-10-12 10:59:17] 2025-10-12 08:59:17,286 [wrapper] ==== pilot stdout END ====
[2025-10-12 10:59:17] 2025-10-12 08:59:17,290 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 10:59:17] 2025-10-12 08:59:17,293 [wrapper] pilotpid: 3279212
[2025-10-12 10:59:17] 2025-10-12 08:59:17,296 [wrapper] Pilot exit status: 0
[2025-10-12 10:59:17] 2025-10-12 08:59:17,310 [wrapper] pandaids: 6838633015
[2025-10-12 10:59:17] 2025-10-12 08:59:17,390 [wrapper] cleanup supervisor_pilot 3459617 3279213
[2025-10-12 10:59:17] 2025-10-12 08:59:17,393 [wrapper] Test setup, not cleaning
[2025-10-12 10:59:17] 2025-10-12 08:59:17,397 [wrapper] apfmon messages muted
[2025-10-12 10:59:17] 2025-10-12 08:59:17,400 [wrapper] ==== wrapper stdout END ====
[2025-10-12 10:59:17] 2025-10-12 08:59:17,403 [wrapper] ==== wrapper stderr END ====
[2025-10-12 10:59:17]  *** Error codes and diagnostics ***
[2025-10-12 10:59:17]     "exeErrorCode": 0,
[2025-10-12 10:59:17]     "exeErrorDiag": "",
[2025-10-12 10:59:17]     "pilotErrorCode": 0,
[2025-10-12 10:59:17]     "pilotErrorDiag": "",
[2025-10-12 10:59:17]  *** Listing of results directory ***
[2025-10-12 10:59:17] total 414252
[2025-10-12 10:59:17] -rw-r--r-- 1 boinc boinc    557409 Oct 11 18:20 pilot3.tar.gz
[2025-10-12 10:59:17] -rw-r--r-- 1 boinc boinc      5112 Oct 11 18:40 queuedata.json
[2025-10-12 10:59:17] -rwx------ 1 boinc boinc     36292 Oct 11 18:42 runpilot2-wrapper.sh
[2025-10-12 10:59:17] -rw-r--r-- 1 boinc boinc       100 Oct 12 10:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 10:59:17] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 10:01 run_atlas
[2025-10-12 10:59:17] -rw-r--r-- 1 boinc boinc       105 Oct 12 10:01 job.xml
[2025-10-12 10:59:17] -rw-r--r-- 1 boinc boinc      6665 Oct 12 10:01 init_data.xml
[2025-10-12 10:59:17] -rw-r--r-- 2 boinc boinc 222858347 Oct 12 10:01 EVNT.46676267._002459.pool.root.1
[2025-10-12 10:59:17] drwxrwx--x 2 boinc boinc      4096 Oct 12 10:01 shared
[2025-10-12 10:59:17] -rw-r--r-- 2 boinc boinc    569681 Oct 12 10:01 input.tar.gz
[2025-10-12 10:59:17] -rw-r--r-- 2 boinc boinc     15120 Oct 12 10:01 start_atlas.sh
[2025-10-12 10:59:17] -rw-r--r-- 1 boinc boinc         0 Oct 12 10:01 boinc_lockfile
[2025-10-12 10:59:17] -rw-r--r-- 1 boinc boinc      2549 Oct 12 10:01 pandaJob.out
[2025-10-12 10:59:17] -rw------- 1 boinc boinc    975520 Oct 12 10:01 agis_schedconf.cvmfs.json
[2025-10-12 10:59:17] -rw------- 1 boinc boinc   1560580 Oct 12 10:01 agis_ddmendpoints.agis.ALL.json
[2025-10-12 10:59:17] drwx------ 5 boinc boinc      4096 Oct 12 10:01 pilot3
[2025-10-12 10:59:17] -rw------- 1 boinc boinc 195708746 Oct 12 10:58 HITS.46676269._061224.pool.root.1
[2025-10-12 10:59:17] -rw-r--r-- 1 boinc boinc       529 Oct 12 10:58 boinc_task_state.xml
[2025-10-12 10:59:17] -rw------- 1 boinc boinc      1021 Oct 12 10:58 memory_monitor_summary.json
[2025-10-12 10:59:17] -rw------- 1 boinc boinc    354122 Oct 12 10:58 log.46676269._061224.job.log.tgz.1
[2025-10-12 10:59:17] -rw------- 1 boinc boinc      7776 Oct 12 10:58 heartbeat.json
[2025-10-12 10:59:17] -rw-r--r-- 1 boinc boinc      8192 Oct 12 10:59 boinc_mmap_file
[2025-10-12 10:59:17] -rw-r--r-- 1 boinc boinc        27 Oct 12 10:59 wrapper_checkpoint.txt
[2025-10-12 10:59:17] -rw------- 1 boinc boinc        95 Oct 12 10:59 pilot_heartbeat.json
[2025-10-12 10:59:17] -rw------- 1 boinc boinc       822 Oct 12 10:59 pilotlog.txt
[2025-10-12 10:59:17] -rw------- 1 boinc boinc    508729 Oct 12 10:59 log.46676269._061224.job.log.1
[2025-10-12 10:59:17] -rw------- 1 boinc boinc       357 Oct 12 10:59 output.list
[2025-10-12 10:59:17] -rw-r--r-- 1 boinc boinc       620 Oct 12 10:59 runtime_log
[2025-10-12 10:59:17] -rw------- 1 boinc boinc    880640 Oct 12 10:59 result.tar.gz
[2025-10-12 10:59:17] -rw-r--r-- 1 boinc boinc      8764 Oct 12 10:59 runtime_log.err
[2025-10-12 10:59:17] -rw------- 1 boinc boinc       663 Oct 12 10:59 0eVKDmxqrR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmszgNDmfTmypm.diag
[2025-10-12 10:59:17] -rw-r--r-- 1 boinc boinc     21889 Oct 12 10:59 stderr.txt
[2025-10-12 10:59:17] HITS file was successfully produced:
[2025-10-12 10:59:17] -rw------- 1 boinc boinc 195708746 Oct 12 10:58 shared/HITS.pool.root.1
[2025-10-12 10:59:17]  *** Contents of shared directory: ***
[2025-10-12 10:59:17] total 410204
[2025-10-12 10:59:17] -rw-r--r-- 2 boinc boinc 222858347 Oct 12 10:01 ATLAS.root_0
[2025-10-12 10:59:17] -rw-r--r-- 2 boinc boinc    569681 Oct 12 10:01 input.tar.gz
[2025-10-12 10:59:17] -rw-r--r-- 2 boinc boinc     15120 Oct 12 10:01 start_atlas.sh
[2025-10-12 10:59:17] -rw------- 1 boinc boinc 195708746 Oct 12 10:58 HITS.pool.root.1
[2025-10-12 10:59:17] -rw------- 1 boinc boinc    880640 Oct 12 10:59 result.tar.gz
10:59:19 (3274515): run_atlas exited; CPU time 35543.409352
10:59:19 (3274515): called boinc_finish(0)

</stderr_txt>
]]>

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