Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:20:17 (584919): wrapper (7.7.26015): starting
10:20:17 (584919): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 10:20:17] Arguments: --nthreads 8
[2025-10-12 10:20:17] Threads: 8
[2025-10-12 10:20:17] Checking for CVMFS
[2025-10-12 10:20:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 10:20:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 10:20:18] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 10:20:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 10:20:18] 2.13.2.0 1101976 129374 284772 151623 1 64 20214649 32935937 25250 16776704 0 170909860 99.813 79233536 29199 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 10:20:18] CVMFS is ok
[2025-10-12 10:20:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 10:20:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 10:20:18] Further information can be found at the LHC@home message board.
[2025-10-12 10:20:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 10:20:18] Checking for apptainer binary...
[2025-10-12 10:20:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 10:20:18] Running /usr/bin/apptainer --version
[2025-10-12 10:20:18] apptainer version 1.4.3-1.el9
[2025-10-12 10:20:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 10:20:18] c-5-2.aglt2.org
[2025-10-12 10:20:18] apptainer works
[2025-10-12 10:20:18] Set ATHENA_PROC_NUMBER=8
[2025-10-12 10:20:18] Set ATHENA_CORE_NUMBER=8
[2025-10-12 10:20:18] Starting ATLAS job with PandaID=6838990846
[2025-10-12 10:20:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 15:52:41]  *** The last 200 lines of the pilot log: ***
[2025-10-12 15:52:41] 2025-10-12 19:51:32,464 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 15:52:41] 2025-10-12 19:51:32,465 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 15:52:41] 2025-10-12 19:51:32,468 | INFO     | fitting pss+swap vs Time
[2025-10-12 15:52:41] 2025-10-12 19:51:32,469 | INFO     | sum of square deviations: 10545814136.774681
[2025-10-12 15:52:41] 2025-10-12 19:51:32,470 | INFO     | sum of deviations: 19911332904.33333
[2025-10-12 15:52:41] 2025-10-12 19:51:32,471 | INFO     | mean x: 1760288811.3858025
[2025-10-12 15:52:41] 2025-10-12 19:51:32,471 | INFO     | mean y: 2115340.3333333335
[2025-10-12 15:52:41] 2025-10-12 19:51:32,471 | INFO     | -- intersect: -3321449448.1881046
[2025-10-12 15:52:41] 2025-10-12 19:51:32,471 | INFO     | intersect: -3321449448.1881046
[2025-10-12 15:52:41] 2025-10-12 19:51:32,471 | INFO     | chi2: 3.704992797794794
[2025-10-12 15:52:41] 2025-10-12 19:51:32,471 | INFO     | sum of square deviations: 10065129862.789997
[2025-10-12 15:52:41] 2025-10-12 19:51:32,473 | INFO     | sum of deviations: 46617027787.67403
[2025-10-12 15:52:41] 2025-10-12 19:51:32,473 | INFO     | mean x: 1760288658.8996866
[2025-10-12 15:52:41] 2025-10-12 19:51:32,473 | INFO     | mean y: 2123740.739811912
[2025-10-12 15:52:41] 2025-10-12 19:51:32,473 | INFO     | -- intersect: -8150719436.139749
[2025-10-12 15:52:41] 2025-10-12 19:51:32,473 | INFO     | intersect: -8150719436.139749
[2025-10-12 15:52:41] 2025-10-12 19:51:32,474 | INFO     | chi2: 2.8860887621331934
[2025-10-12 15:52:41] 2025-10-12 19:51:32,474 | INFO     | current chi2=2.8860887621331934 (change=22.1027159931056 %)
[2025-10-12 15:52:41] 2025-10-12 19:51:32,474 | INFO     | right removable region: 318
[2025-10-12 15:52:41] 2025-10-12 19:51:32,474 | INFO     | sum of square deviations: 10064954792.790005
[2025-10-12 15:52:41] 2025-10-12 19:51:32,476 | INFO     | sum of deviations: -41881942376.05956
[2025-10-12 15:52:41] 2025-10-12 19:51:32,476 | INFO     | mean x: 1760288963.8996866
[2025-10-12 15:52:41] 2025-10-12 19:51:32,476 | INFO     | mean y: 2134872.4043887146
[2025-10-12 15:52:41] 2025-10-12 19:51:32,476 | INFO     | -- intersect: 7326988532.36046
[2025-10-12 15:52:41] 2025-10-12 19:51:32,476 | INFO     | intersect: 7326988532.36046
[2025-10-12 15:52:41] 2025-10-12 19:51:32,476 | INFO     | chi2: 1.5690539050654235
[2025-10-12 15:52:41] 2025-10-12 19:51:32,476 | INFO     | current chi2=1.5690539050654235 (change=57.650284610557904 %)
[2025-10-12 15:52:41] 2025-10-12 19:51:32,477 | INFO     | sum of square deviations: 9598971733.82164
[2025-10-12 15:52:41] 2025-10-12 19:51:32,478 | INFO     | sum of deviations: -67989456643.28026
[2025-10-12 15:52:41] 2025-10-12 19:51:32,479 | INFO     | mean x: 1760289116.4076433
[2025-10-12 15:52:41] 2025-10-12 19:51:32,479 | INFO     | mean y: 2143393.7834394905
[2025-10-12 15:52:41] 2025-10-12 19:51:32,479 | INFO     | -- intersect: 12470260175.286549
[2025-10-12 15:52:41] 2025-10-12 19:51:32,479 | INFO     | intersect: 12470260175.286549
[2025-10-12 15:52:41] 2025-10-12 19:51:32,479 | INFO     | chi2: 1.1739801561036636
[2025-10-12 15:52:41] 2025-10-12 19:51:32,479 | INFO     | current chi2=1.1739801561036636 (change=25.179106191720475 %)
[2025-10-12 15:52:41] 2025-10-12 19:51:32,479 | INFO     | sum of square deviations: 9147555412.135935
[2025-10-12 15:52:41] 2025-10-12 19:51:32,481 | INFO     | sum of deviations: -73812957769.34952
[2025-10-12 15:52:41] 2025-10-12 19:51:32,481 | INFO     | mean x: 1760289268.9223301
[2025-10-12 15:52:41] 2025-10-12 19:51:32,481 | INFO     | mean y: 2145339.485436893
[2025-10-12 15:52:41] 2025-10-12 19:51:32,481 | INFO     | -- intersect: 14206175991.91788
[2025-10-12 15:52:41] 2025-10-12 19:51:32,481 | INFO     | intersect: 14206175991.91788
[2025-10-12 15:52:41] 2025-10-12 19:51:32,482 | INFO     | chi2: 1.104049624190176
[2025-10-12 15:52:41] 2025-10-12 19:51:32,482 | INFO     | current chi2=1.104049624190176 (change=5.956704766252676 %)
[2025-10-12 15:52:41] 2025-10-12 19:51:32,482 | INFO     | left removable region: 30
[2025-10-12 15:52:41] 2025-10-12 19:51:32,482 | INFO     | sum of square deviations: 7406421348.163165
[2025-10-12 15:52:41] 2025-10-12 19:51:32,483 | INFO     | sum of deviations: -30625374067.531254
[2025-10-12 15:52:41] 2025-10-12 19:51:32,484 | INFO     | mean x: 1760289543.4201388
[2025-10-12 15:52:41] 2025-10-12 19:51:32,484 | INFO     | mean y: 2149459.78125
[2025-10-12 15:52:41] 2025-10-12 19:51:32,484 | INFO     | -- intersect: 7280904367.207009
[2025-10-12 15:52:41] 2025-10-12 19:51:32,484 | INFO     | intersect: 7280904367.207009
[2025-10-12 15:52:41] 2025-10-12 19:51:32,484 | INFO     | chi2: 0.2545707203668029
[2025-10-12 15:52:41] 2025-10-12 19:51:32,484 | INFO     | -- intersect: 7280904367.207009
[2025-10-12 15:52:41] 2025-10-12 19:51:32,484 | INFO     | current memory leak: -4.13 B/s (using 288 data points, chi2=0.25)
[2025-10-12 15:52:41] 2025-10-12 19:51:32,485 | INFO     | could have reported an average CPU frequency of 2604 MHz (14 samples)
[2025-10-12 15:52:41] 2025-10-12 19:51:32,485 | INFO     | ..............................
[2025-10-12 15:52:41] 2025-10-12 19:51:32,485 | INFO     | . Timing measurements:
[2025-10-12 15:52:41] 2025-10-12 19:51:32,485 | INFO     | . get job = 0 s
[2025-10-12 15:52:41] 2025-10-12 19:51:32,485 | INFO     | . initial setup = 5 s
[2025-10-12 15:52:41] 2025-10-12 19:51:32,485 | INFO     | . payload setup = 30 s
[2025-10-12 15:52:41] 2025-10-12 19:51:32,485 | INFO     | . stage-in = 0 s
[2025-10-12 15:52:41] 2025-10-12 19:51:32,485 | INFO     | . payload execution = 19749 s
[2025-10-12 15:52:41] 2025-10-12 19:51:32,485 | INFO     | . stage-out = 2 s
[2025-10-12 15:52:41] 2025-10-12 19:51:32,485 | INFO     | . log creation = 0 s
[2025-10-12 15:52:41] 2025-10-12 19:51:32,485 | INFO     | ..............................
[2025-10-12 15:52:41] 2025-10-12 19:51:32,543 | INFO     | 
[2025-10-12 15:52:41] 2025-10-12 19:51:32,543 | INFO     | job summary report
[2025-10-12 15:52:41] 2025-10-12 19:51:32,544 | INFO     | --------------------------------------------------
[2025-10-12 15:52:41] 2025-10-12 19:51:32,544 | INFO     | PanDA job id: 6838990846
[2025-10-12 15:52:41] 2025-10-12 19:51:32,544 | INFO     | task id: 46676269
[2025-10-12 15:52:41] 2025-10-12 19:51:32,544 | INFO     | errors: (none)
[2025-10-12 15:52:41] 2025-10-12 19:51:32,544 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 15:52:41] 2025-10-12 19:51:32,544 | INFO     | pilot state: finished 
[2025-10-12 15:52:41] 2025-10-12 19:51:32,544 | INFO     | transexitcode: 0
[2025-10-12 15:52:41] 2025-10-12 19:51:32,544 | INFO     | exeerrorcode: 0
[2025-10-12 15:52:41] 2025-10-12 19:51:32,544 | INFO     | exeerrordiag: 
[2025-10-12 15:52:41] 2025-10-12 19:51:32,544 | INFO     | exitcode: 0
[2025-10-12 15:52:41] 2025-10-12 19:51:32,544 | INFO     | exitmsg: OK
[2025-10-12 15:52:41] 2025-10-12 19:51:32,544 | INFO     | cpuconsumptiontime: 50487 s
[2025-10-12 15:52:41] 2025-10-12 19:51:32,544 | INFO     | nevents: 400
[2025-10-12 15:52:41] 2025-10-12 19:51:32,544 | INFO     | neventsw: 0
[2025-10-12 15:52:41] 2025-10-12 19:51:32,544 | INFO     | pid: 599012
[2025-10-12 15:52:41] 2025-10-12 19:51:32,544 | INFO     | pgrp: 599012
[2025-10-12 15:52:41] 2025-10-12 19:51:32,544 | INFO     | corecount: 8
[2025-10-12 15:52:41] 2025-10-12 19:51:32,545 | INFO     | event service: False
[2025-10-12 15:52:41] 2025-10-12 19:51:32,545 | INFO     | sizes: {0: 2348628, 1: 2348712, 2: 2348911, 13: 2348911, 23: 2349229, 24: 2349257, 19784: 2382300, 19786: 2391298, 19787: 2391354, 19791: 2391548}
[2025-10-12 15:52:41] 2025-10-12 19:51:32,545 | INFO     | --------------------------------------------------
[2025-10-12 15:52:41] 2025-10-12 19:51:32,545 | INFO     | 
[2025-10-12 15:52:41] 2025-10-12 19:51:32,545 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 15:52:41] 2025-10-12 19:51:32,559 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 15:52:41] 2025-10-12 19:51:32,560 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 15:52:41] 2025-10-12 19:51:32,560 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 15:52:41] 2025-10-12 19:51:32,560 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 15:52:41] 2025-10-12 19:51:32,560 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 15:52:41] 2025-10-12 19:51:32,560 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 15:52:41] 2025-10-12 19:51:32,560 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 15:52:41] 2025-10-12 19:51:32,560 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 15:52:41] 2025-10-12 19:51:32,560 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 15:52:41] 2025-10-12 19:51:32,561 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 15:52:41] 2025-10-12 19:51:32,561 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 15:52:41] 2025-10-12 19:51:32,561 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 15:52:41] 2025-10-12 19:51:32,561 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 15:52:41] 2025-10-12 19:51:32,561 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 15:52:41] 2025-10-12 19:51:32,561 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 15:52:41] 2025-10-12 19:51:32,561 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 15:52:41] 2025-10-12 19:51:32,561 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 15:52:41] 2025-10-12 19:51:32,561 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 15:52:41] 2025-10-12 19:51:32,562 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 15:52:41] 2025-10-12 19:51:32,562 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 15:52:41] 2025-10-12 19:51:32,562 | INFO     | job 6838990846 has completed (purged errors)
[2025-10-12 15:52:41] 2025-10-12 19:51:32,562 | INFO     | overall cleanup function is called
[2025-10-12 15:52:41] 2025-10-12 19:51:33,570 | INFO     | --- collectZombieJob: --- 10, [599012]
[2025-10-12 15:52:41] 2025-10-12 19:51:33,570 | INFO     | zombie collector waiting for pid 599012
[2025-10-12 15:52:41] 2025-10-12 19:51:33,571 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 15:52:41] 2025-10-12 19:51:33,571 | INFO     | collected zombie processes
[2025-10-12 15:52:41] 2025-10-12 19:51:33,571 | INFO     | will attempt to kill all subprocesses of pid=599012
[2025-10-12 15:52:41] 2025-10-12 19:51:33,951 | INFO     | process IDs to be killed: [599012] (in reverse order)
[2025-10-12 15:52:41] 2025-10-12 19:51:34,144 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 15:52:41] 2025-10-12 19:51:34,145 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 15:52:41] 2025-10-12 19:51:34,184 | INFO     | did not find any defunct processes belonging to 599012
[2025-10-12 15:52:41] 2025-10-12 19:51:34,236 | INFO     | did not find any defunct processes belonging to 599012
[2025-10-12 15:52:41] 2025-10-12 19:51:34,236 | INFO     | ready for new job
[2025-10-12 15:52:41] 2025-10-12 19:51:34,236 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 15:52:41] 2025-10-12 19:51:34,238 | INFO     | ***************************************
[2025-10-12 15:52:41] 2025-10-12 19:51:34,239 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 15:52:41] 2025-10-12 19:51:34,239 | INFO     | ***************************************
[2025-10-12 15:52:41] 2025-10-12 19:51:34,239 | INFO     | 
[2025-10-12 15:52:41] 2025-10-12 19:51:34,243 | INFO     | architecture information:
[2025-10-12 15:52:41] 2025-10-12 19:51:34,248 | INFO     | executing command: cat /etc/os-release
[2025-10-12 15:52:41] 2025-10-12 19:51:34,294 | INFO     | cat /etc/os-release:
[2025-10-12 15:52:41] NAME="CentOS Linux"
[2025-10-12 15:52:41] VERSION="7 (Core)"
[2025-10-12 15:52:41] ID="centos"
[2025-10-12 15:52:41] ID_LIKE="rhel fedora"
[2025-10-12 15:52:41] VERSION_ID="7"
[2025-10-12 15:52:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 15:52:41] ANSI_COLOR="0;31"
[2025-10-12 15:52:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 15:52:41] HOME_URL="https://www.centos.org/"
[2025-10-12 15:52:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 15:52:41] 
[2025-10-12 15:52:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 15:52:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 15:52:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 15:52:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 15:52:41] 
[2025-10-12 15:52:41] 2025-10-12 19:51:34,294 | INFO     | ***************************************
[2025-10-12 15:52:41] 2025-10-12 19:51:34,798 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 15:52:41] 2025-10-12 19:51:34,819 | INFO     | sufficient remaining disk space (75850842112 B)
[2025-10-12 15:52:41] 2025-10-12 19:51:34,820 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 15:52:41] 2025-10-12 19:51:34,820 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 15:52:41] 2025-10-12 19:51:34,820 | INFO     | update_server=False
[2025-10-12 15:52:41] 2025-10-12 19:51:34,820 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 15:52:41] 2025-10-12 19:51:34,837 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 15:52:41] 2025-10-12 19:51:34,837 | INFO     | aborting loop
[2025-10-12 15:52:41] 2025-10-12 19:51:35,209 | INFO     | all data control threads have been joined
[2025-10-12 15:52:41] 2025-10-12 19:51:35,615 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 15:52:41] 2025-10-12 19:51:35,826 | INFO     | [job] retrieve thread has finished
[2025-10-12 15:52:41] 2025-10-12 19:51:35,839 | INFO     | all job control threads have been joined
[2025-10-12 15:52:41] 2025-10-12 19:51:35,842 | INFO     | [job] job monitor thread has finished
[2025-10-12 15:52:41] 2025-10-12 19:51:35,917 | INFO     | all payload control threads have been joined
[2025-10-12 15:52:41] 2025-10-12 19:51:36,199 | INFO     | [data] copytool_in thread has finished
[2025-10-12 15:52:41] 2025-10-12 19:51:36,215 | INFO     | [data] control thread has finished
[2025-10-12 15:52:41] 2025-10-12 19:51:36,230 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 15:52:41] 2025-10-12 19:51:36,277 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 15:52:41] 2025-10-12 19:51:36,539 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 15:52:41] 2025-10-12 19:51:36,710 | INFO     | [job] validate thread has finished
[2025-10-12 15:52:41] 2025-10-12 19:51:36,848 | INFO     | [job] control thread has finished
[2025-10-12 15:52:41] 2025-10-12 19:51:36,925 | INFO     | [payload] control thread has finished
[2025-10-12 15:52:41] 2025-10-12 19:51:37,027 | INFO     | [payload] failed_post thread has finished
[2025-10-12 15:52:41] 2025-10-12 19:51:37,305 | INFO     | [payload] validate_post thread has finished
[2025-10-12 15:52:41] 2025-10-12 19:51:37,556 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 15:52:41] 2025-10-12 19:51:37,622 | INFO     | [data] copytool_out thread has finished
[2025-10-12 15:52:41] 2025-10-12 19:51:38,281 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 15:52:41] 2025-10-12 19:51:38,573 | INFO     | [job] queue monitor thread has finished
[2025-10-12 15:52:41] 2025-10-12 19:51:42,288 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 15:52:41] 2025-10-12 19:51:45,852 | INFO     | job.realtimelogging is not enabled
[2025-10-12 15:52:41] 2025-10-12 19:51:46,857 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 15:52:41] 2025-10-12 19:52:05,011 | INFO     | PID=590853 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 15:52:41] 2025-10-12 19:52:05,012 | INFO     | .. there are 35 such processes running
[2025-10-12 15:52:41] 2025-10-12 19:52:05,012 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 15:52:41] 2025-10-12 19:52:05,012 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 15:52:41] 2025-10-12 19:52:05,012 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 15:52:41] 2025-10-12 19:52:33,530 | INFO     | [monitor] cgroup control has ended
[2025-10-12 15:52:41] 2025-10-12 19:52:35,626 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140114234971968)>', '<ExcThread(monitor, started 140113216521984)>']
[2025-10-12 15:52:41] 2025-10-12 19:52:36,178 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 15:52:41] 2025-10-12 19:52:36,178 | INFO     | [monitor] control thread has ended
[2025-10-12 15:52:41] 2025-10-12 19:52:40,651 | INFO     | all workflow threads have been joined
[2025-10-12 15:52:41] 2025-10-12 19:52:40,652 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 15:52:41] 2025-10-12 19:52:40,652 | INFO     | traces error code: 0
[2025-10-12 15:52:41] 2025-10-12 19:52:40,652 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 15:52:41] 2025-10-12 19:52:40,862 [wrapper] ==== pilot stdout END ====
[2025-10-12 15:52:41] 2025-10-12 19:52:40,865 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 15:52:41] 2025-10-12 19:52:40,868 [wrapper] pilotpid: 590853
[2025-10-12 15:52:41] 2025-10-12 19:52:40,871 [wrapper] Pilot exit status: 0
[2025-10-12 15:52:41] 2025-10-12 19:52:40,892 [wrapper] pandaids: 6838990846
[2025-10-12 15:52:41] 2025-10-12 19:52:40,968 [wrapper] cleanup supervisor_pilot 1717129 590854
[2025-10-12 15:52:41] 2025-10-12 19:52:40,971 [wrapper] Test setup, not cleaning
[2025-10-12 15:52:41] 2025-10-12 19:52:40,974 [wrapper] apfmon messages muted
[2025-10-12 15:52:41] 2025-10-12 19:52:40,977 [wrapper] ==== wrapper stdout END ====
[2025-10-12 15:52:41] 2025-10-12 19:52:40,980 [wrapper] ==== wrapper stderr END ====
[2025-10-12 15:52:41]  *** Error codes and diagnostics ***
[2025-10-12 15:52:41]     "exeErrorCode": 0,
[2025-10-12 15:52:41]     "exeErrorDiag": "",
[2025-10-12 15:52:41]     "pilotErrorCode": 0,
[2025-10-12 15:52:41]     "pilotErrorDiag": "",
[2025-10-12 15:52:41]  *** Listing of results directory ***
[2025-10-12 15:52:41] total 418920
[2025-10-12 15:52:41] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 18:51 pilot3.tar.gz
[2025-10-12 15:52:41] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 18:56 queuedata.json
[2025-10-12 15:52:41] -rwx------. 1 boincer umatlas     36292 Oct 11 18:56 runpilot2-wrapper.sh
[2025-10-12 15:52:41] -rw-r--r--. 1 boincer umatlas       100 Oct 12 10:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 15:52:41] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 10:20 run_atlas
[2025-10-12 15:52:41] -rw-r--r--. 1 boincer umatlas       105 Oct 12 10:20 job.xml
[2025-10-12 15:52:41] -rw-r--r--. 2 boincer umatlas 223496834 Oct 12 10:20 EVNT.46676267._002673.pool.root.1
[2025-10-12 15:52:41] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 10:20 start_atlas.sh
[2025-10-12 15:52:41] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 10:20 shared
[2025-10-12 15:52:41] -rw-r--r--. 2 boincer umatlas    569679 Oct 12 10:20 input.tar.gz
[2025-10-12 15:52:41] -rw-r--r--. 1 boincer umatlas         0 Oct 12 10:20 boinc_lockfile
[2025-10-12 15:52:41] -rw-r--r--. 1 boincer umatlas      2549 Oct 12 10:20 pandaJob.out
[2025-10-12 15:52:41] -rw-------. 1 boincer umatlas    975528 Oct 12 10:20 agis_schedconf.cvmfs.json
[2025-10-12 15:52:41] drwx------. 5 boincer umatlas      4096 Oct 12 10:20 pilot3
[2025-10-12 15:52:41] -rw-r--r--. 1 boincer umatlas      6657 Oct 12 15:48 init_data.xml
[2025-10-12 15:52:41] -rw-------. 1 boincer umatlas 195820842 Oct 12 15:50 HITS.46676269._066335.pool.root.1
[2025-10-12 15:52:41] -rw-r--r--. 1 boincer umatlas       531 Oct 12 15:50 boinc_task_state.xml
[2025-10-12 15:52:41] -rw-------. 1 boincer umatlas      1044 Oct 12 15:51 memory_monitor_summary.json
[2025-10-12 15:52:41] -rw-------. 1 boincer umatlas        95 Oct 12 15:51 pilot_heartbeat.json
[2025-10-12 15:52:41] -rw-------. 1 boincer umatlas   1560580 Oct 12 15:51 agis_ddmendpoints.agis.ALL.json
[2025-10-12 15:52:41] -rw-------. 1 boincer umatlas    511267 Oct 12 15:51 log.46676269._066335.job.log.tgz.1
[2025-10-12 15:52:41] -rw-------. 1 boincer umatlas      7826 Oct 12 15:51 heartbeat.json
[2025-10-12 15:52:41] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 15:52 boinc_mmap_file
[2025-10-12 15:52:41] -rw-r--r--. 1 boincer umatlas        28 Oct 12 15:52 wrapper_checkpoint.txt
[2025-10-12 15:52:41] -rw-------. 1 boincer umatlas      4895 Oct 12 15:52 pilotlog.txt
[2025-10-12 15:52:41] -rw-------. 1 boincer umatlas   2366703 Oct 12 15:52 log.46676269._066335.job.log.1
[2025-10-12 15:52:41] -rw-------. 1 boincer umatlas       357 Oct 12 15:52 output.list
[2025-10-12 15:52:41] -rw-r--r--. 1 boincer umatlas       620 Oct 12 15:52 runtime_log
[2025-10-12 15:52:41] -rw-------. 1 boincer umatlas   2897920 Oct 12 15:52 result.tar.gz
[2025-10-12 15:52:41] -rw-------. 1 boincer umatlas       654 Oct 12 15:52 uSZLDmLhxR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmsqhNDmGtwmVo.diag
[2025-10-12 15:52:41] -rw-r--r--. 1 boincer umatlas      8689 Oct 12 15:52 runtime_log.err
[2025-10-12 15:52:41] -rw-r--r--. 1 boincer umatlas     20982 Oct 12 15:52 stderr.txt
[2025-10-12 15:52:41] HITS file was successfully produced:
[2025-10-12 15:52:41] -rw-------. 1 boincer umatlas 195820842 Oct 12 15:50 shared/HITS.pool.root.1
[2025-10-12 15:52:41]  *** Contents of shared directory: ***
[2025-10-12 15:52:41] total 412904
[2025-10-12 15:52:41] -rw-r--r--. 2 boincer umatlas 223496834 Oct 12 10:20 ATLAS.root_0
[2025-10-12 15:52:41] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 10:20 start_atlas.sh
[2025-10-12 15:52:41] -rw-r--r--. 2 boincer umatlas    569679 Oct 12 10:20 input.tar.gz
[2025-10-12 15:52:41] -rw-------. 1 boincer umatlas 195820842 Oct 12 15:50 HITS.pool.root.1
[2025-10-12 15:52:41] -rw-------. 1 boincer umatlas   2897920 Oct 12 15:52 result.tar.gz
15:52:42 (584919): run_atlas exited; CPU time 51196.629268
15:52:42 (584919): called boinc_finish(0)

</stderr_txt>
]]>

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