Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:45:18 (3647976): wrapper (7.7.26015): starting
16:45:18 (3647976): wrapper: running run_atlas (--nthreads 9)
[2025-10-12 16:45:18] Arguments: --nthreads 9
[2025-10-12 16:45:18] Threads: 9
[2025-10-12 16:45:18] Checking for CVMFS
[2025-10-12 16:45:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:45:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:45:19] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:45:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:45:20] 2.13.2.0 403710 11758 207540 151636 2 309 24475063 32935937 17305 16776704 0 32023259 99.716 24381565 28268 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 16:45:20] CVMFS is ok
[2025-10-12 16:45:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 16:45:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 16:45:20] Further information can be found at the LHC@home message board.
[2025-10-12 16:45:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:45:20] Checking for apptainer binary...
[2025-10-12 16:45:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 16:45:20] Running /usr/bin/apptainer --version
[2025-10-12 16:45:20] apptainer version 1.4.3-1.el9
[2025-10-12 16:45:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:45:21] c-4-40.aglt2.org
[2025-10-12 16:45:21] apptainer works
[2025-10-12 16:45:21] Set ATHENA_PROC_NUMBER=9
[2025-10-12 16:45:21] Set ATHENA_CORE_NUMBER=9
[2025-10-12 16:45:21] Starting ATLAS job with PandaID=6839242192
[2025-10-12 16:45:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
21:13:02 (105945): wrapper (7.7.26015): starting
21:13:02 (105945): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 21:13:02] Arguments: --nthreads 8
[2025-10-12 21:13:02] Threads: 8
[2025-10-12 21:13:02] This job has been restarted, cleaning up previous attempt
[2025-10-12 21:13:02] Checking for CVMFS
[2025-10-12 21:13:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 21:13:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 21:13:03] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 21:13:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 21:13:04] 2.13.2.0 403710 12026 213484 151642 3 339 25768331 32935937 16754 16776704 0 32531037 99.714 24741527 28253 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 21:13:04] CVMFS is ok
[2025-10-12 21:13:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 21:13:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 21:13:04] Further information can be found at the LHC@home message board.
[2025-10-12 21:13:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 21:13:04] Checking for apptainer binary...
[2025-10-12 21:13:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 21:13:04] Running /usr/bin/apptainer --version
[2025-10-12 21:13:04] apptainer version 1.4.3-1.el9
[2025-10-12 21:13:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 21:13:05] c-4-40.aglt2.org
[2025-10-12 21:13:05] apptainer works
[2025-10-12 21:13:05] Set ATHENA_PROC_NUMBER=8
[2025-10-12 21:13:05] Set ATHENA_CORE_NUMBER=8
[2025-10-12 21:13:05] Starting ATLAS job with PandaID=6839242192
[2025-10-12 21:13:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:40:39]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:40:39] 2025-10-13 07:21:41,535 | INFO     | fitting pss+swap vs Time
[2025-10-13 05:40:39] 2025-10-13 07:21:41,536 | INFO     | sum of square deviations: 14469606905.600027
[2025-10-13 05:40:39] 2025-10-13 07:21:41,557 | INFO     | sum of deviations: -67354670011.23338
[2025-10-13 05:40:39] 2025-10-13 07:21:41,557 | INFO     | mean x: 1760329038.3666666
[2025-10-13 05:40:39] 2025-10-13 07:21:41,557 | INFO     | mean y: 2092686.3805555555
[2025-10-13 05:40:39] 2025-10-13 07:21:41,557 | INFO     | -- intersect: 8196260106.677997
[2025-10-13 05:40:39] 2025-10-13 07:21:41,557 | INFO     | intersect: 8196260106.677997
[2025-10-13 05:40:39] 2025-10-13 07:21:41,558 | INFO     | chi2: 7.51995020434244
[2025-10-13 05:40:39] 2025-10-13 07:21:41,558 | INFO     | sum of square deviations: 13875344887.932432
[2025-10-13 05:40:39] 2025-10-13 07:21:41,578 | INFO     | sum of deviations: 33978236786.833794
[2025-10-13 05:40:39] 2025-10-13 07:21:41,579 | INFO     | mean x: 1760328885.8929577
[2025-10-13 05:40:39] 2025-10-13 07:21:41,579 | INFO     | mean y: 2118677.6535211266
[2025-10-13 05:40:39] 2025-10-13 07:21:41,579 | INFO     | -- intersect: -4308611771.979791
[2025-10-13 05:40:39] 2025-10-13 07:21:41,579 | INFO     | intersect: -4308611771.979791
[2025-10-13 05:40:39] 2025-10-13 07:21:41,580 | INFO     | chi2: 3.4560599939966234
[2025-10-13 05:40:39] 2025-10-13 07:21:41,580 | INFO     | current chi2=3.4560599939966234 (change=54.04145107236348 %)
[2025-10-13 05:40:39] 2025-10-13 07:21:41,597 | INFO     | sum of square deviations: 13297421697.797142
[2025-10-13 05:40:39] 2025-10-13 07:21:41,616 | INFO     | sum of deviations: 69989332957.89995
[2025-10-13 05:40:39] 2025-10-13 07:21:41,617 | INFO     | mean x: 1760328733.397143
[2025-10-13 05:40:39] 2025-10-13 07:21:41,617 | INFO     | mean y: 2128136.9
[2025-10-13 05:40:39] 2025-10-13 07:21:41,617 | INFO     | -- intersect: -9263144232.216564
[2025-10-13 05:40:39] 2025-10-13 07:21:41,617 | INFO     | intersect: -9263144232.216564
[2025-10-13 05:40:39] 2025-10-13 07:21:41,618 | INFO     | chi2: 2.605156893730746
[2025-10-13 05:40:39] 2025-10-13 07:21:41,618 | INFO     | current chi2=2.605156893730746 (change=24.6206113824397 %)
[2025-10-13 05:40:39] 2025-10-13 07:21:41,618 | INFO     | right removable region: 349
[2025-10-13 05:40:39] 2025-10-13 07:21:41,619 | INFO     | sum of square deviations: 13874934967.932432
[2025-10-13 05:40:39] 2025-10-13 07:21:41,646 | INFO     | sum of deviations: -135950466167.62814
[2025-10-13 05:40:39] 2025-10-13 07:21:41,647 | INFO     | mean x: 1760329190.8929577
[2025-10-13 05:40:39] 2025-10-13 07:21:41,647 | INFO     | mean y: 2110234.5887323944
[2025-10-13 05:40:39] 2025-10-13 07:21:41,647 | INFO     | -- intersect: 17250304526.200832
[2025-10-13 05:40:39] 2025-10-13 07:21:41,647 | INFO     | intersect: 17250304526.200832
[2025-10-13 05:40:39] 2025-10-13 07:21:41,648 | INFO     | chi2: 5.475725972510572
[2025-10-13 05:40:39] 2025-10-13 07:21:41,648 | INFO     | current chi2=5.475725972510572 (change=27.184012876194565 %)
[2025-10-13 05:40:39] 2025-10-13 07:21:41,648 | INFO     | sum of square deviations: 13296774967.259985
[2025-10-13 05:40:39] 2025-10-13 07:21:41,668 | INFO     | sum of deviations: -161440311587.04004
[2025-10-13 05:40:39] 2025-10-13 07:21:41,668 | INFO     | mean x: 1760329343.42
[2025-10-13 05:40:39] 2025-10-13 07:21:41,668 | INFO     | mean y: 2116945.8914285717
[2025-10-13 05:40:39] 2025-10-13 07:21:41,668 | INFO     | -- intersect: 21374827125.410694
[2025-10-13 05:40:39] 2025-10-13 07:21:41,668 | INFO     | intersect: 21374827125.410694
[2025-10-13 05:40:39] 2025-10-13 07:21:41,683 | INFO     | chi2: 5.1672767795257535
[2025-10-13 05:40:39] 2025-10-13 07:21:41,683 | INFO     | current chi2=5.1672767795257535 (change=5.633028287633566 %)
[2025-10-13 05:40:39] 2025-10-13 07:21:41,683 | INFO     | left removable region: 20
[2025-10-13 05:40:39] 2025-10-13 07:21:41,684 | INFO     | sum of square deviations: 11044507817.696093
[2025-10-13 05:40:39] 2025-10-13 07:21:41,703 | INFO     | sum of deviations: -26029082293.313065
[2025-10-13 05:40:39] 2025-10-13 07:21:41,703 | INFO     | mean x: 1760329312.969605
[2025-10-13 05:40:39] 2025-10-13 07:21:41,704 | INFO     | mean y: 2155016.6686930093
[2025-10-13 05:40:39] 2025-10-13 07:21:41,704 | INFO     | -- intersect: 4150801321.8668537
[2025-10-13 05:40:39] 2025-10-13 07:21:41,704 | INFO     | intersect: 4150801321.8668537
[2025-10-13 05:40:39] 2025-10-13 07:21:41,704 | INFO     | chi2: 0.15225461655098046
[2025-10-13 05:40:39] 2025-10-13 07:21:41,705 | INFO     | -- intersect: 4150801321.8668537
[2025-10-13 05:40:39] 2025-10-13 07:21:41,705 | INFO     | current memory leak: -2.36 B/s (using 329 data points, chi2=0.15)
[2025-10-13 05:40:39] 2025-10-13 07:21:41,705 | INFO     | could have reported an average CPU frequency of 2601 MHz (15 samples)
[2025-10-13 05:40:39] 2025-10-13 07:21:41,706 | INFO     | ..............................
[2025-10-13 05:40:39] 2025-10-13 07:21:41,706 | INFO     | . Timing measurements:
[2025-10-13 05:40:39] 2025-10-13 07:21:41,706 | INFO     | . get job = 0 s
[2025-10-13 05:40:39] 2025-10-13 07:21:41,706 | INFO     | . initial setup = 3 s
[2025-10-13 05:40:39] 2025-10-13 07:21:41,706 | INFO     | . payload setup = 17 s
[2025-10-13 05:40:39] 2025-10-13 07:21:41,706 | INFO     | . stage-in = 0 s
[2025-10-13 05:40:39] 2025-10-13 07:21:41,706 | INFO     | . payload execution = 21956 s
[2025-10-13 05:40:39] 2025-10-13 07:21:41,706 | INFO     | . stage-out = 15 s
[2025-10-13 05:40:39] 2025-10-13 07:21:41,706 | INFO     | . log creation = 3 s
[2025-10-13 05:40:39] 2025-10-13 07:21:41,706 | INFO     | ..............................
[2025-10-13 05:40:39] 2025-10-13 07:21:43,323 | INFO     | 
[2025-10-13 05:40:39] 2025-10-13 07:21:43,323 | INFO     | job summary report
[2025-10-13 05:40:39] 2025-10-13 07:21:43,323 | INFO     | --------------------------------------------------
[2025-10-13 05:40:39] 2025-10-13 07:21:43,323 | INFO     | PanDA job id: 6839242192
[2025-10-13 05:40:39] 2025-10-13 07:21:43,323 | INFO     | task id: 46676269
[2025-10-13 05:40:39] 2025-10-13 07:21:43,324 | INFO     | errors: (none)
[2025-10-13 05:40:39] 2025-10-13 07:21:43,324 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:40:39] 2025-10-13 07:21:43,324 | INFO     | pilot state: finished 
[2025-10-13 05:40:39] 2025-10-13 07:21:43,324 | INFO     | transexitcode: 0
[2025-10-13 05:40:39] 2025-10-13 07:21:43,324 | INFO     | exeerrorcode: 0
[2025-10-13 05:40:39] 2025-10-13 07:21:43,324 | INFO     | exeerrordiag: 
[2025-10-13 05:40:39] 2025-10-13 07:21:43,324 | INFO     | exitcode: 0
[2025-10-13 05:40:39] 2025-10-13 07:21:43,324 | INFO     | exitmsg: OK
[2025-10-13 05:40:39] 2025-10-13 07:21:43,324 | INFO     | cpuconsumptiontime: 49740 s
[2025-10-13 05:40:39] 2025-10-13 07:21:43,325 | INFO     | nevents: 400
[2025-10-13 05:40:39] 2025-10-13 07:21:43,325 | INFO     | neventsw: 0
[2025-10-13 05:40:39] 2025-10-13 07:21:43,325 | INFO     | pid: 126978
[2025-10-13 05:40:39] 2025-10-13 07:21:43,325 | INFO     | pgrp: 126978
[2025-10-13 05:40:39] 2025-10-13 07:21:43,325 | INFO     | corecount: 8
[2025-10-13 05:40:39] 2025-10-13 07:21:43,325 | INFO     | event service: False
[2025-10-13 05:40:39] 2025-10-13 07:21:43,325 | INFO     | sizes: {0: 2348685, 1: 2348884, 12: 2348884, 13: 2349174, 23: 2349230, 21979: 2382865, 21998: 2391891, 22001: 2391947, 22054: 2392141}
[2025-10-13 05:40:39] 2025-10-13 07:21:43,325 | INFO     | --------------------------------------------------
[2025-10-13 05:40:39] 2025-10-13 07:21:43,325 | INFO     | 
[2025-10-13 05:40:39] 2025-10-13 07:21:43,326 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 05:40:39] 2025-10-13 07:21:43,753 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:40:39] 2025-10-13 07:21:43,754 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:40:39] 2025-10-13 07:21:43,758 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:40:39] 2025-10-13 07:21:43,758 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:40:39] 2025-10-13 07:21:43,758 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:40:39] 2025-10-13 07:21:43,758 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:40:39] 2025-10-13 07:21:43,758 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:40:39] 2025-10-13 07:21:43,759 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:40:39] 2025-10-13 07:21:43,759 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:40:39] 2025-10-13 07:21:43,759 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:40:39] 2025-10-13 07:21:43,759 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:40:39] 2025-10-13 07:21:43,759 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:40:39] 2025-10-13 07:21:43,759 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:40:39] 2025-10-13 07:21:43,759 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:40:39] 2025-10-13 07:21:43,759 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:40:39] 2025-10-13 07:21:43,759 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:40:39] 2025-10-13 07:21:43,759 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:40:39] 2025-10-13 07:21:43,760 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:40:39] 2025-10-13 07:21:43,760 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:40:39] 2025-10-13 07:21:43,760 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:40:39] 2025-10-13 07:21:43,760 | INFO     | job 6839242192 has completed (purged errors)
[2025-10-13 05:40:39] 2025-10-13 07:21:43,760 | INFO     | overall cleanup function is called
[2025-10-13 05:40:39] 2025-10-13 07:21:44,822 | INFO     | --- collectZombieJob: --- 10, [126978]
[2025-10-13 05:40:39] 2025-10-13 07:21:44,822 | INFO     | zombie collector waiting for pid 126978
[2025-10-13 05:40:39] 2025-10-13 07:21:44,822 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:40:39] 2025-10-13 07:21:44,822 | INFO     | collected zombie processes
[2025-10-13 05:40:39] 2025-10-13 07:21:44,823 | INFO     | will attempt to kill all subprocesses of pid=126978
[2025-10-13 05:40:39] 2025-10-13 07:21:49,457 | INFO     | PID=113408 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 05:40:39] 2025-10-13 07:21:49,457 | INFO     | .. there are 30 such processes running
[2025-10-13 05:40:39] 2025-10-13 07:21:49,894 | INFO     | process IDs to be killed: [126978] (in reverse order)
[2025-10-13 05:40:39] 2025-10-13 07:21:50,338 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:40:39] 2025-10-13 07:21:50,339 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:40:39] 2025-10-13 07:21:50,442 | INFO     | did not find any defunct processes belonging to 126978
[2025-10-13 05:40:39] 2025-10-13 07:21:50,505 | INFO     | did not find any defunct processes belonging to 126978
[2025-10-13 05:40:39] 2025-10-13 07:21:50,505 | INFO     | ready for new job
[2025-10-13 05:40:39] 2025-10-13 07:21:50,506 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:40:39] 2025-10-13 07:21:50,523 | INFO     | ***************************************
[2025-10-13 05:40:39] 2025-10-13 07:21:50,524 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:40:39] 2025-10-13 07:21:50,524 | INFO     | ***************************************
[2025-10-13 05:40:39] 2025-10-13 07:21:50,524 | INFO     | 
[2025-10-13 05:40:39] 2025-10-13 07:21:50,551 | INFO     | architecture information:
[2025-10-13 05:40:39] 2025-10-13 07:21:50,551 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:40:39] 2025-10-13 07:21:50,625 | INFO     | cat /etc/os-release:
[2025-10-13 05:40:39] NAME="CentOS Linux"
[2025-10-13 05:40:39] VERSION="7 (Core)"
[2025-10-13 05:40:39] ID="centos"
[2025-10-13 05:40:39] ID_LIKE="rhel fedora"
[2025-10-13 05:40:39] VERSION_ID="7"
[2025-10-13 05:40:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:40:39] ANSI_COLOR="0;31"
[2025-10-13 05:40:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:40:39] HOME_URL="https://www.centos.org/"
[2025-10-13 05:40:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:40:39] 
[2025-10-13 05:40:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:40:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:40:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:40:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:40:39] 
[2025-10-13 05:40:39] 2025-10-13 07:21:50,625 | INFO     | ***************************************
[2025-10-13 05:40:39] 2025-10-13 07:21:51,164 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 05:40:39] 2025-10-13 07:21:51,404 | INFO     | sufficient remaining disk space (74822189056 B)
[2025-10-13 05:40:39] 2025-10-13 07:21:51,405 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:40:39] 2025-10-13 07:21:51,405 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:40:39] 2025-10-13 07:21:51,405 | INFO     | update_server=False
[2025-10-13 05:40:39] 2025-10-13 07:21:51,405 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:40:39] 2025-10-13 07:21:51,460 | INFO     | all data control threads have been joined
[2025-10-13 05:40:39] 2025-10-13 07:21:51,503 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:40:39] 2025-10-13 07:21:51,578 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:40:39] 2025-10-13 07:21:51,625 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:40:39] 2025-10-13 07:21:51,625 | INFO     | aborting loop
[2025-10-13 05:40:39] 2025-10-13 07:21:51,748 | INFO     | all payload control threads have been joined
[2025-10-13 05:40:39] 2025-10-13 07:21:52,133 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:40:39] 2025-10-13 07:21:52,411 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:40:39] 2025-10-13 07:21:52,467 | INFO     | [data] control thread has finished
[2025-10-13 05:40:39] 2025-10-13 07:21:52,634 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:40:39] 2025-10-13 07:21:52,729 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:40:39] 2025-10-13 07:21:52,730 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:40:39] 2025-10-13 07:21:52,756 | INFO     | [payload] control thread has finished
[2025-10-13 05:40:39] 2025-10-13 07:21:52,911 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:40:39] 2025-10-13 07:21:53,023 | INFO     | [job] validate thread has finished
[2025-10-13 05:40:39] 2025-10-13 07:21:53,128 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:40:39] 2025-10-13 07:21:53,139 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:40:39] 2025-10-13 07:21:53,192 | INFO     | all job control threads have been joined
[2025-10-13 05:40:39] 2025-10-13 07:21:53,520 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:40:39] 2025-10-13 07:21:53,521 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:40:39] 2025-10-13 07:21:53,608 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:40:39] 2025-10-13 07:21:53,626 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:40:39] 2025-10-13 07:21:54,258 | INFO     | [job] control thread has finished
[2025-10-13 05:40:39] 2025-10-13 07:21:55,599 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:40:39] 2025-10-13 07:22:18,913 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:40:39] 2025-10-13 07:22:19,841 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140136143533888)>', '<ExcThread(monitor, started 140135505057536)>']
[2025-10-13 05:40:39] 2025-10-13 07:22:24,918 | INFO     | all workflow threads have been joined
[2025-10-13 05:40:39] 2025-10-13 07:22:24,919 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:40:39] 2025-10-13 07:22:24,919 | INFO     | traces error code: 0
[2025-10-13 05:40:39] 2025-10-13 07:22:24,919 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:40:39] 2025-10-13 07:22:31,836 | INFO     | PID=113408 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 05:40:39] 2025-10-13 07:22:32,025 | INFO     | .. there are 30 such processes running
[2025-10-13 05:40:39] 2025-10-13 07:22:32,026 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:40:39] 2025-10-13 07:22:32,026 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:40:39] 2025-10-13 07:22:32,026 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:40:39] 2025-10-13 07:22:32,026 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:40:39] 2025-10-13 07:22:32,026 | CRITICAL | thread 'MainThread' is not alive
[2025-10-13 05:40:39] 2025-10-13 07:22:32,026 | INFO     | [monitor] control thread has ended
[2025-10-13 05:40:39] 2025-10-13 07:22:36,382 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:40:39] 2025-10-13 07:22:36,461 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:40:39] 2025-10-13 07:22:36,531 [wrapper] pilotpid: 113408
[2025-10-13 05:40:39] 2025-10-13 07:22:36,607 [wrapper] Pilot exit status: 0
[2025-10-13 05:40:39] 2025-10-13 07:22:36,901 [wrapper] pandaids: 6839242192 6839242192
[2025-10-13 05:40:39] 2025-10-13 07:22:37,444 [wrapper] cleanup supervisor_pilot 1051740 113409
[2025-10-13 05:40:39] 2025-10-13 07:22:37,528 [wrapper] Test setup, not cleaning
[2025-10-13 05:40:39] 2025-10-13 07:22:37,614 [wrapper] apfmon messages muted
[2025-10-13 05:40:39] 2025-10-13 07:22:37,645 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:40:39] 2025-10-13 07:22:37,687 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:40:39]  *** Error codes and diagnostics ***
[2025-10-13 05:40:39]     "exeErrorCode": 0,
[2025-10-13 05:40:39]     "exeErrorDiag": "",
[2025-10-13 05:40:39]     "pilotErrorCode": 0,
[2025-10-13 05:40:39]     "pilotErrorDiag": "",
[2025-10-13 05:40:39]  *** Listing of results directory ***
[2025-10-13 05:40:39] total 631828
[2025-10-13 05:40:39] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-13 05:40:39] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 21:26 pilot3.tar.gz
[2025-10-13 05:40:39] -rwx------. 1 boincer umatlas     36292 Oct 11 21:47 runpilot2-wrapper.sh
[2025-10-13 05:40:39] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 21:47 queuedata.json
[2025-10-13 05:40:39] -rw-r--r--. 1 boincer umatlas       100 Oct 12 16:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:40:39] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 16:45 run_atlas
[2025-10-13 05:40:39] -rw-r--r--. 1 boincer umatlas       105 Oct 12 16:45 job.xml
[2025-10-13 05:40:39] -rw-r--r--. 3 boincer umatlas 221635662 Oct 12 16:45 EVNT.46676267._003162.pool.root.1
[2025-10-13 05:40:39] -rw-r--r--. 3 boincer umatlas 221635662 Oct 12 16:45 ATLAS.root_0
[2025-10-13 05:40:39] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 16:45 shared
[2025-10-13 05:40:39] -rw-r--r--. 2 boincer umatlas    569681 Oct 12 16:45 input.tar.gz
[2025-10-13 05:40:39] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 16:45 start_atlas.sh
[2025-10-13 05:40:39] -rw-r--r--. 1 boincer umatlas         0 Oct 12 16:45 boinc_lockfile
[2025-10-13 05:40:39] -rw-r--r--. 1 boincer umatlas      2549 Oct 12 21:13 pandaJob.out
[2025-10-13 05:40:39] -rw-------. 1 boincer umatlas    975603 Oct 12 21:13 agis_schedconf.cvmfs.json
[2025-10-13 05:40:39] -rw-------. 1 boincer umatlas 193891949 Oct 13 03:13 HITS.46676269._068851.pool.root.1
[2025-10-13 05:40:39] -rw-r--r--. 1 boincer umatlas       531 Oct 13 03:13 boinc_task_state.xml
[2025-10-13 05:40:39] -rw-------. 1 boincer umatlas      1052 Oct 13 03:20 memory_monitor_summary.json
[2025-10-13 05:40:39] -rw-------. 1 boincer umatlas   1560580 Oct 13 03:20 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:40:39] -rw-------. 1 boincer umatlas    523422 Oct 13 03:20 log.46676269._068851.job.log.tgz.1
[2025-10-13 05:40:39] -rw-------. 1 boincer umatlas      7845 Oct 13 03:21 heartbeat.json
[2025-10-13 05:40:39] -rw-------. 1 boincer umatlas        96 Oct 13 03:21 pilot_heartbeat.json
[2025-10-13 05:40:39] -rw-------. 1 boincer umatlas       892 Oct 13 03:22 pilotlog.txt
[2025-10-13 05:40:39] -rw-------. 1 boincer umatlas   2436107 Oct 13 03:22 log.46676269._068851.job.log.1
[2025-10-13 05:40:39] -rw-------. 1 boincer umatlas       357 Oct 13 03:22 output.list
[2025-10-13 05:40:39] -rw-r--r--. 1 boincer umatlas       620 Oct 13 03:22 runtime_log
[2025-10-13 05:40:39] -rw-------. 1 boincer umatlas   2979840 Oct 13 03:22 result.tar.gz
[2025-10-13 05:40:39] -rw-r--r--. 1 boincer umatlas      8779 Oct 13 03:22 runtime_log.err
[2025-10-13 05:40:39] -rw-------. 1 boincer umatlas       784 Oct 13 03:22 QskNDmBM0R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmJySMDmu5Nxqm.diag
[2025-10-13 05:40:39] -rw-r--r--. 1 boincer umatlas        28 Oct 13 05:40 wrapper_checkpoint.txt
[2025-10-13 05:40:39] -rw-r--r--. 1 boincer umatlas      6658 Oct 13 05:40 init_data.xml
[2025-10-13 05:40:39] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 05:40 boinc_mmap_file
[2025-10-13 05:40:39] -rw-r--r--. 1 boincer umatlas     23251 Oct 13 05:40 stderr.txt
[2025-10-13 05:40:40] HITS file was successfully produced:
[2025-10-13 05:40:40] -rw-------. 1 boincer umatlas 193891949 Oct 13 03:13 shared/HITS.pool.root.1
[2025-10-13 05:40:40]  *** Contents of shared directory: ***
[2025-10-13 05:40:40] total 409288
[2025-10-13 05:40:40] -rw-r--r--. 3 boincer umatlas 221635662 Oct 12 16:45 ATLAS.root_0
[2025-10-13 05:40:40] -rw-r--r--. 2 boincer umatlas    569681 Oct 12 16:45 input.tar.gz
[2025-10-13 05:40:40] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 16:45 start_atlas.sh
[2025-10-13 05:40:40] -rw-------. 1 boincer umatlas 193891949 Oct 13 03:13 HITS.pool.root.1
[2025-10-13 05:40:40] -rw-------. 1 boincer umatlas   2979840 Oct 13 03:22 result.tar.gz
05:40:42 (105945): run_atlas exited; CPU time 50371.667220
05:40:42 (105945): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN