Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:02:58 (1880365): wrapper (7.7.26015): starting
15:02:58 (1880365): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 15:02:58] Arguments: --nthreads 4
[2025-10-12 15:02:58] Threads: 4
[2025-10-12 15:02:58] Checking for CVMFS
[2025-10-12 15:02:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 15:02:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 15:02:58] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 15:02:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 15:02:58] 2.9.2.0 287733 4408 97436 151620 2 188 22392234 36864001 0 130560 0 4158882 99.992 148571 917 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 15:02:58] CVMFS is ok
[2025-10-12 15:02:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 15:02:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 15:02:58] Further information can be found at the LHC@home message board.
[2025-10-12 15:02:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 15:02:58] Checking for apptainer binary...
[2025-10-12 15:02:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 15:02:58] Running /usr/bin/apptainer --version
[2025-10-12 15:02:58] apptainer version 1.4.1-1.1
[2025-10-12 15:02:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 15:02:58] thA373a
[2025-10-12 15:02:58] apptainer works
[2025-10-12 15:02:58] Set ATHENA_PROC_NUMBER=4
[2025-10-12 15:02:58] Set ATHENA_CORE_NUMBER=4
[2025-10-12 15:02:58] Starting ATLAS job with PandaID=6839242161
[2025-10-12 15:02:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 15:10:16]  *** The last 200 lines of the pilot log: ***
[2025-10-12 15:10:16] 2025-10-12 13:09:45,148 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 15:10:16] 2025-10-12 13:09:45,148 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 15:10:16] 2025-10-12 13:09:45,148 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 15:10:16] 2025-10-12 13:09:45,148 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 15:10:16] 2025-10-12 13:09:45,148 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 15:10:16] 2025-10-12 13:09:45,148 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 15:10:16] 2025-10-12 13:09:45,148 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 15:10:16] 2025-10-12 13:09:45,148 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 15:10:16] 2025-10-12 13:09:45,148 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 15:10:16] 2025-10-12 13:09:45,149 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 15:10:16] 2025-10-12 13:09:45,149 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 15:10:16] 2025-10-12 13:09:45,149 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 15:10:16] 2025-10-12 13:09:45,149 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 15:10:16] 2025-10-12 13:09:45,149 | INFO     | job 6839242161 has completed (purged errors)
[2025-10-12 15:10:16] 2025-10-12 13:09:45,149 | INFO     | overall cleanup function is called
[2025-10-12 15:10:16] 2025-10-12 13:09:46,156 | INFO     | --- collectZombieJob: --- 10, [1890708]
[2025-10-12 15:10:16] 2025-10-12 13:09:46,156 | INFO     | zombie collector waiting for pid 1890708
[2025-10-12 15:10:16] 2025-10-12 13:09:46,156 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 15:10:16] 2025-10-12 13:09:46,156 | INFO     | collected zombie processes
[2025-10-12 15:10:16] 2025-10-12 13:09:46,156 | INFO     | will attempt to kill all subprocesses of pid=1890708
[2025-10-12 15:10:16] 2025-10-12 13:09:46,201 | INFO     | process IDs to be killed: [1890708] (in reverse order)
[2025-10-12 15:10:16] 2025-10-12 13:09:46,233 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 15:10:16] 2025-10-12 13:09:46,233 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 15:10:16] 2025-10-12 13:09:46,235 | INFO     | did not find any defunct processes belonging to 1890708
[2025-10-12 15:10:16] 2025-10-12 13:09:46,236 | INFO     | did not find any defunct processes belonging to 1890708
[2025-10-12 15:10:16] 2025-10-12 13:09:46,236 | INFO     | ready for new job
[2025-10-12 15:10:16] 2025-10-12 13:09:46,237 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 15:10:16] 2025-10-12 13:09:46,237 | INFO     | ***************************************
[2025-10-12 15:10:16] 2025-10-12 13:09:46,237 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 15:10:16] 2025-10-12 13:09:46,237 | INFO     | ***************************************
[2025-10-12 15:10:16] 2025-10-12 13:09:46,237 | INFO     | 
[2025-10-12 15:10:16] 2025-10-12 13:09:46,238 | INFO     | architecture information:
[2025-10-12 15:10:16] 2025-10-12 13:09:46,238 | INFO     | executing command: cat /etc/os-release
[2025-10-12 15:10:16] 2025-10-12 13:09:46,252 | INFO     | cat /etc/os-release:
[2025-10-12 15:10:16] NAME="CentOS Linux"
[2025-10-12 15:10:16] VERSION="7 (Core)"
[2025-10-12 15:10:16] ID="centos"
[2025-10-12 15:10:16] ID_LIKE="rhel fedora"
[2025-10-12 15:10:16] VERSION_ID="7"
[2025-10-12 15:10:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 15:10:16] ANSI_COLOR="0;31"
[2025-10-12 15:10:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 15:10:16] HOME_URL="https://www.centos.org/"
[2025-10-12 15:10:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 15:10:16] 
[2025-10-12 15:10:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 15:10:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 15:10:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 15:10:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 15:10:16] 
[2025-10-12 15:10:16] 2025-10-12 13:09:46,252 | INFO     | ***************************************
[2025-10-12 15:10:16] 2025-10-12 13:09:46,755 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 15:10:16] 2025-10-12 13:09:46,773 | INFO     | sufficient remaining disk space (337577508864 B)
[2025-10-12 15:10:16] 2025-10-12 13:09:46,773 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 15:10:16] 2025-10-12 13:09:46,773 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 15:10:16] 2025-10-12 13:09:46,773 | INFO     | update_server=False
[2025-10-12 15:10:16] 2025-10-12 13:09:46,773 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 15:10:16] 2025-10-12 13:09:46,773 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 15:10:16] 2025-10-12 13:09:46,774 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 15:10:16] 2025-10-12 13:09:46,774 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 15:10:16] 2025-10-12 13:09:46,987 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 15:10:16] 2025-10-12 13:09:46,987 | INFO     | aborting loop
[2025-10-12 15:10:16] 2025-10-12 13:09:47,364 | INFO     | all payload control threads have been joined
[2025-10-12 15:10:16] 2025-10-12 13:09:47,677 | INFO     | all data control threads have been joined
[2025-10-12 15:10:16] 2025-10-12 13:09:47,779 | INFO     | [job] retrieve thread has finished
[2025-10-12 15:10:16] 2025-10-12 13:09:47,779 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 15:10:16] 2025-10-12 13:09:47,779 | INFO     | [job] queue monitor thread has finished
[2025-10-12 15:10:16] 2025-10-12 13:09:47,872 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 15:10:16] 2025-10-12 13:09:47,993 | INFO     | [job] job monitor thread has finished
[2025-10-12 15:10:16] 2025-10-12 13:09:47,997 | INFO     | all job control threads have been joined
[2025-10-12 15:10:16] 2025-10-12 13:09:48,068 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 15:10:16] 2025-10-12 13:09:48,160 | INFO     | [payload] validate_post thread has finished
[2025-10-12 15:10:16] 2025-10-12 13:09:48,234 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 15:10:16] 2025-10-12 13:09:48,369 | INFO     | [payload] control thread has finished
[2025-10-12 15:10:16] 2025-10-12 13:09:48,418 | INFO     | [data] copytool_in thread has finished
[2025-10-12 15:10:16] 2025-10-12 13:09:48,683 | INFO     | [data] control thread has finished
[2025-10-12 15:10:16] 2025-10-12 13:09:48,699 | INFO     | [payload] failed_post thread has finished
[2025-10-12 15:10:16] 2025-10-12 13:09:48,779 | INFO     | [data] copytool_out thread has finished
[2025-10-12 15:10:16] 2025-10-12 13:09:49,002 | INFO     | [job] control thread has finished
[2025-10-12 15:10:16] 2025-10-12 13:09:49,181 | INFO     | [job] validate thread has finished
[2025-10-12 15:10:16] 2025-10-12 13:09:50,780 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 15:10:16] 2025-10-12 13:10:06,673 | INFO     | [monitor] cgroup control has ended
[2025-10-12 15:10:16] 2025-10-12 13:10:07,364 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140612576479040)>', '<ExcThread(monitor, started 140611625662208)>']
[2025-10-12 15:10:16] 2025-10-12 13:10:12,390 | INFO     | all workflow threads have been joined
[2025-10-12 15:10:16] 2025-10-12 13:10:12,390 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 15:10:16] 2025-10-12 13:10:12,391 | INFO     | traces error code: 0
[2025-10-12 15:10:16] 2025-10-12 13:10:12,391 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 15:10:16] 2025-10-12 13:10:16,596 | INFO     | PID=1884157 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 15:10:16] 2025-10-12 13:10:16,597 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 15:10:16] 2025-10-12 13:10:16,597 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 15:10:16] 2025-10-12 13:10:16,597 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 15:10:16] 2025-10-12 13:10:16,597 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 15:10:16] 2025-10-12 13:10:16,597 | CRITICAL | thread 'MainThread' is not alive
[2025-10-12 15:10:16] 2025-10-12 13:10:16,597 | INFO     | [monitor] control thread has ended
[2025-10-12 15:10:16] 2025-10-12 13:10:16,670 [wrapper] ==== pilot stdout END ====
[2025-10-12 15:10:16] 2025-10-12 13:10:16,674 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 15:10:16] 2025-10-12 13:10:16,678 [wrapper] pilotpid: 1884157
[2025-10-12 15:10:16] 2025-10-12 13:10:16,682 [wrapper] Pilot exit status: 0
[2025-10-12 15:10:16] 2025-10-12 13:10:16,694 [wrapper] pandaids: 6839242161
[2025-10-12 15:10:16] 2025-10-12 13:10:16,715 [wrapper] cleanup supervisor_pilot 1884163 1884158
[2025-10-12 15:10:16] 2025-10-12 13:10:16,719 [wrapper] Test setup, not cleaning
[2025-10-12 15:10:16] 2025-10-12 13:10:16,723 [wrapper] apfmon messages muted
[2025-10-12 15:10:16] 2025-10-12 13:10:16,726 [wrapper] ==== wrapper stdout END ====
[2025-10-12 15:10:16] 2025-10-12 13:10:16,730 [wrapper] ==== wrapper stderr END ====
[2025-10-12 15:10:16]  *** Error codes and diagnostics ***
[2025-10-12 15:10:16]     "exeErrorCode": 65,
[2025-10-12 15:10:16]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possible memory leak: 'pss' slope: 8066.29 KB/s",
[2025-10-12 15:10:16]     "pilotErrorCode": 1305,
[2025-10-12 15:10:16]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possib",
[2025-10-12 15:10:16]  *** Listing of results directory ***
[2025-10-12 15:10:16] total 221888
[2025-10-12 15:10:16] -rw-r--r-- 1 boinc boinc    557409 Oct 12 03:26 pilot3.tar.gz
[2025-10-12 15:10:16] -rwx------ 1 boinc boinc     36292 Oct 12 03:43 runpilot2-wrapper.sh
[2025-10-12 15:10:16] -rw-r--r-- 1 boinc boinc      5112 Oct 12 03:43 queuedata.json
[2025-10-12 15:10:16] -rw-r--r-- 1 boinc boinc       100 Oct 12 15:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 15:10:16] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 15:02 run_atlas
[2025-10-12 15:10:16] -rw-r--r-- 1 boinc boinc       105 Oct 12 15:02 job.xml
[2025-10-12 15:10:16] -rw-r--r-- 2 boinc boinc 222809684 Oct 12 15:02 EVNT.46676267._003160.pool.root.1
[2025-10-12 15:10:16] -rw-r--r-- 2 boinc boinc    569672 Oct 12 15:02 input.tar.gz
[2025-10-12 15:10:16] -rw-r--r-- 2 boinc boinc     15120 Oct 12 15:02 start_atlas.sh
[2025-10-12 15:10:16] drwxrwx--x 2 boinc boinc      4096 Oct 12 15:02 shared
[2025-10-12 15:10:16] -rw-r--r-- 1 boinc boinc         0 Oct 12 15:02 boinc_setup_complete
[2025-10-12 15:10:16] -rw-r--r-- 1 boinc boinc      6376 Oct 12 15:02 init_data.xml
[2025-10-12 15:10:16] -rw-r--r-- 1 boinc boinc         0 Oct 12 15:02 boinc_lockfile
[2025-10-12 15:10:16] -rw-r--r-- 1 boinc boinc      2549 Oct 12 15:02 pandaJob.out
[2025-10-12 15:10:16] -rw------- 1 boinc boinc    975512 Oct 12 15:03 agis_schedconf.cvmfs.json
[2025-10-12 15:10:16] -rw------- 1 boinc boinc   1560580 Oct 12 15:03 agis_ddmendpoints.agis.ALL.json
[2025-10-12 15:10:16] drwx------ 5 boinc boinc      4096 Oct 12 15:03 pilot3
[2025-10-12 15:10:16] -rw-r--r-- 1 boinc boinc       526 Oct 12 15:07 boinc_task_state.xml
[2025-10-12 15:10:16] -rw------- 1 boinc boinc      1004 Oct 12 15:07 memory_monitor_summary.json
[2025-10-12 15:10:16] -rw------- 1 boinc boinc    140561 Oct 12 15:07 log.46676269._068820.job.log.tgz.1
[2025-10-12 15:10:16] -rw------- 1 boinc boinc      9844 Oct 12 15:09 heartbeat.json
[2025-10-12 15:10:16] -rw-r--r-- 1 boinc boinc        24 Oct 12 15:10 wrapper_checkpoint.txt
[2025-10-12 15:10:16] -rw-r--r-- 1 boinc boinc      8192 Oct 12 15:10 boinc_mmap_file
[2025-10-12 15:10:16] -rw------- 1 boinc boinc       817 Oct 12 15:10 pilotlog.txt
[2025-10-12 15:10:16] -rw------- 1 boinc boinc        95 Oct 12 15:10 pilot_heartbeat.json
[2025-10-12 15:10:16] -rw------- 1 boinc boinc    113483 Oct 12 15:10 log.46676269._068820.job.log.1
[2025-10-12 15:10:16] -rw------- 1 boinc boinc       188 Oct 12 15:10 output.list
[2025-10-12 15:10:16] -rw-r--r-- 1 boinc boinc       620 Oct 12 15:10 runtime_log
[2025-10-12 15:10:16] -rw------- 1 boinc boinc    276480 Oct 12 15:10 result.tar.gz
[2025-10-12 15:10:16] -rw-r--r-- 1 boinc boinc      8629 Oct 12 15:10 runtime_log.err
[2025-10-12 15:10:16] -rw------- 1 boinc boinc       651 Oct 12 15:10 0wTNDm7H0R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmwxSMDmEzzJ0n.diag
[2025-10-12 15:10:16] -rw-r--r-- 1 boinc boinc     12726 Oct 12 15:10 stderr.txt
[2025-10-12 15:10:16] No HITS result produced
[2025-10-12 15:10:16]  *** Contents of shared directory: ***
[2025-10-12 15:10:16] total 218440
[2025-10-12 15:10:16] -rw-r--r-- 2 boinc boinc 222809684 Oct 12 15:02 ATLAS.root_0
[2025-10-12 15:10:16] -rw-r--r-- 2 boinc boinc    569672 Oct 12 15:02 input.tar.gz
[2025-10-12 15:10:16] -rw-r--r-- 2 boinc boinc     15120 Oct 12 15:02 start_atlas.sh
[2025-10-12 15:10:16] -rw------- 1 boinc boinc    276480 Oct 12 15:10 result.tar.gz
15:10:18 (1880365): run_atlas exited; CPU time 138.635648
15:10:18 (1880365): called boinc_finish(0)

</stderr_txt>
]]>

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