Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:10 (4191001): wrapper (7.7.26015): starting
00:03:10 (4191001): wrapper: running run_atlas (--nthreads 9)
[2025-10-12 00:03:10] Arguments: --nthreads 9
[2025-10-12 00:03:10] Threads: 9
[2025-10-12 00:03:10] Checking for CVMFS
[2025-10-12 00:03:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 00:03:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 00:03:11] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 00:03:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 00:03:12] 2.13.2.0 129418 108648 511748 151606 0 113 30725816 39288833 19554 16776704 0 104412219 99.394 172440149 31344 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 00:03:12] CVMFS is ok
[2025-10-12 00:03:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 00:03:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 00:03:12] Further information can be found at the LHC@home message board.
[2025-10-12 00:03:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 00:03:12] Checking for apptainer binary...
[2025-10-12 00:03:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 00:03:12] Running /usr/bin/apptainer --version
[2025-10-12 00:03:12] apptainer version 1.4.3-1.el9
[2025-10-12 00:03:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 00:03:13] c-211-23.aglt2.org
[2025-10-12 00:03:13] apptainer works
[2025-10-12 00:03:13] Set ATHENA_PROC_NUMBER=9
[2025-10-12 00:03:13] Set ATHENA_CORE_NUMBER=9
[2025-10-12 00:03:13] Starting ATLAS job with PandaID=6839083799
[2025-10-12 00:03:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 18:18:05]  *** The last 200 lines of the pilot log: ***
[2025-10-12 18:18:05] 2025-10-12 17:25:38,374 | INFO     | sum of square deviations: 148283986185.95367
[2025-10-12 18:18:05] 2025-10-12 17:25:38,597 | INFO     | sum of deviations: 530852208994.803
[2025-10-12 18:18:05] 2025-10-12 17:25:38,598 | INFO     | mean x: 1760265986.9923275
[2025-10-12 18:18:05] 2025-10-12 17:25:38,598 | INFO     | mean y: 2522267.800511509
[2025-10-12 18:18:05] 2025-10-12 17:25:38,598 | INFO     | -- intersect: -6299177002.958706
[2025-10-12 18:18:05] 2025-10-12 17:25:38,598 | INFO     | intersect: -6299177002.958706
[2025-10-12 18:18:05] 2025-10-12 17:25:38,668 | INFO     | chi2: 7.448155362521284
[2025-10-12 18:18:05] 2025-10-12 17:25:38,669 | INFO     | sum of square deviations: 145458092582.24976
[2025-10-12 18:18:05] 2025-10-12 17:25:38,891 | INFO     | sum of deviations: 632052465525.5079
[2025-10-12 18:18:05] 2025-10-12 17:25:38,892 | INFO     | mean x: 1760265834.5006435
[2025-10-12 18:18:05] 2025-10-12 17:25:38,892 | INFO     | mean y: 2527706.985842986
[2025-10-12 18:18:05] 2025-10-12 17:25:38,892 | INFO     | -- intersect: -7646275745.096655
[2025-10-12 18:18:05] 2025-10-12 17:25:38,892 | INFO     | intersect: -7646275745.096655
[2025-10-12 18:18:05] 2025-10-12 17:25:38,893 | INFO     | chi2: 5.947657134810516
[2025-10-12 18:18:05] 2025-10-12 17:25:38,894 | INFO     | current chi2=5.947657134810516 (change=20.14590398128903 %)
[2025-10-12 18:18:05] 2025-10-12 17:25:38,894 | INFO     | right removable region: 776
[2025-10-12 18:18:05] 2025-10-12 17:25:38,956 | INFO     | sum of square deviations: 145457428412.2471
[2025-10-12 18:18:05] 2025-10-12 17:25:39,155 | INFO     | sum of deviations: 269215324438.74905
[2025-10-12 18:18:05] 2025-10-12 17:25:39,156 | INFO     | mean x: 1760266139.5019305
[2025-10-12 18:18:05] 2025-10-12 17:25:39,190 | INFO     | mean y: 2536379.5006435006
[2025-10-12 18:18:05] 2025-10-12 17:25:39,190 | INFO     | -- intersect: -3255397058.6011415
[2025-10-12 18:18:05] 2025-10-12 17:25:39,190 | INFO     | intersect: -3255397058.6011415
[2025-10-12 18:18:05] 2025-10-12 17:25:39,192 | INFO     | chi2: 3.522046939077718
[2025-10-12 18:18:05] 2025-10-12 17:25:39,192 | INFO     | current chi2=3.522046939077718 (change=52.71249366251853 %)
[2025-10-12 18:18:05] 2025-10-12 17:25:39,193 | INFO     | sum of square deviations: 142667105282.93665
[2025-10-12 18:18:05] 2025-10-12 17:25:39,544 | INFO     | sum of deviations: 106342342606.4429
[2025-10-12 18:18:05] 2025-10-12 17:25:39,544 | INFO     | mean x: 1760266292.0090673
[2025-10-12 18:18:05] 2025-10-12 17:25:39,544 | INFO     | mean y: 2545274.365284974
[2025-10-12 18:18:05] 2025-10-12 17:25:39,545 | INFO     | -- intersect: -1309536026.591689
[2025-10-12 18:18:05] 2025-10-12 17:25:39,545 | INFO     | intersect: -1309536026.591689
[2025-10-12 18:18:05] 2025-10-12 17:25:39,604 | INFO     | chi2: 1.9866275531444213
[2025-10-12 18:18:05] 2025-10-12 17:25:39,605 | INFO     | current chi2=1.9866275531444213 (change=43.594517974691186 %)
[2025-10-12 18:18:05] 2025-10-12 17:25:39,606 | INFO     | sum of square deviations: 139912690169.54584
[2025-10-12 18:18:05] 2025-10-12 17:25:40,536 | INFO     | monitor loop #1887: job 0:6839083799 is in state 'finished'
[2025-10-12 18:18:05] 2025-10-12 17:25:40,536 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:18:05] 2025-10-12 17:25:40,581 | INFO     | sum of deviations: 32005876223.21115
[2025-10-12 18:18:05] 2025-10-12 17:25:40,582 | INFO     | mean x: 1760266444.5162973
[2025-10-12 18:18:05] 2025-10-12 17:25:40,582 | INFO     | mean y: 2549388.8631029986
[2025-10-12 18:18:05] 2025-10-12 17:25:40,582 | INFO     | -- intersect: -400122233.5236105
[2025-10-12 18:18:05] 2025-10-12 17:25:40,582 | INFO     | intersect: -400122233.5236105
[2025-10-12 18:18:05] 2025-10-12 17:25:40,771 | INFO     | chi2: 1.6891084593159498
[2025-10-12 18:18:05] 2025-10-12 17:25:40,772 | INFO     | current chi2=1.6891084593159498 (change=14.976088162955367 %)
[2025-10-12 18:18:05] 2025-10-12 17:25:40,773 | INFO     | left removable region: 30
[2025-10-12 18:18:05] 2025-10-12 17:25:40,774 | INFO     | sum of square deviations: 128732535988.61273
[2025-10-12 18:18:05] 2025-10-12 17:25:41,573 | INFO     | sum of deviations: 85388042018.32304
[2025-10-12 18:18:05] 2025-10-12 17:25:41,574 | INFO     | mean x: 1760266719.0227883
[2025-10-12 18:18:05] 2025-10-12 17:25:41,574 | INFO     | mean y: 2557892.392761394
[2025-10-12 18:18:05] 2025-10-12 17:25:41,574 | INFO     | -- intersect: -1165023616.1442027
[2025-10-12 18:18:05] 2025-10-12 17:25:41,574 | INFO     | intersect: -1165023616.1442027
[2025-10-12 18:18:05] 2025-10-12 17:25:41,576 | INFO     | chi2: 0.030946268770885584
[2025-10-12 18:18:05] 2025-10-12 17:25:41,576 | INFO     | -- intersect: -1165023616.1442027
[2025-10-12 18:18:05] 2025-10-12 17:25:41,576 | INFO     | current memory leak: 0.66 B/s (using 746 data points, chi2=0.03)
[2025-10-12 18:18:05] 2025-10-12 17:25:41,623 | INFO     | could have reported an average CPU frequency of 2899 MHz (29 samples)
[2025-10-12 18:18:05] 2025-10-12 17:25:41,623 | INFO     | ..............................
[2025-10-12 18:18:05] 2025-10-12 17:25:41,623 | INFO     | . Timing measurements:
[2025-10-12 18:18:05] 2025-10-12 17:25:41,624 | INFO     | . get job = 3 s
[2025-10-12 18:18:05] 2025-10-12 17:25:41,624 | INFO     | . initial setup = 5 s
[2025-10-12 18:18:05] 2025-10-12 17:25:41,624 | INFO     | . payload setup = 74 s
[2025-10-12 18:18:05] 2025-10-12 17:25:41,624 | INFO     | . stage-in = 0 s
[2025-10-12 18:18:05] 2025-10-12 17:25:41,624 | INFO     | . payload execution = 47734 s
[2025-10-12 18:18:05] 2025-10-12 17:25:41,624 | INFO     | . stage-out = 20 s
[2025-10-12 18:18:05] 2025-10-12 17:25:41,625 | INFO     | . log creation = 4 s
[2025-10-12 18:18:05] 2025-10-12 17:25:41,625 | INFO     | ..............................
[2025-10-12 18:18:05] 2025-10-12 17:25:46,569 | INFO     | 
[2025-10-12 18:18:05] 2025-10-12 17:25:46,569 | INFO     | job summary report
[2025-10-12 18:18:05] 2025-10-12 17:25:46,569 | INFO     | --------------------------------------------------
[2025-10-12 18:18:05] 2025-10-12 17:25:46,570 | INFO     | PanDA job id: 6839083799
[2025-10-12 18:18:05] 2025-10-12 17:25:46,570 | INFO     | task id: 46676269
[2025-10-12 18:18:05] 2025-10-12 17:25:46,570 | INFO     | errors: (none)
[2025-10-12 18:18:05] 2025-10-12 17:25:46,570 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 18:18:05] 2025-10-12 17:25:46,570 | INFO     | pilot state: finished 
[2025-10-12 18:18:05] 2025-10-12 17:25:46,570 | INFO     | transexitcode: 0
[2025-10-12 18:18:05] 2025-10-12 17:25:46,571 | INFO     | exeerrorcode: 0
[2025-10-12 18:18:05] 2025-10-12 17:25:46,571 | INFO     | exeerrordiag: 
[2025-10-12 18:18:05] 2025-10-12 17:25:46,571 | INFO     | exitcode: 0
[2025-10-12 18:18:05] 2025-10-12 17:25:46,571 | INFO     | exitmsg: OK
[2025-10-12 18:18:05] 2025-10-12 17:25:46,571 | INFO     | cpuconsumptiontime: 76552 s
[2025-10-12 18:18:05] 2025-10-12 17:25:46,571 | INFO     | nevents: 400
[2025-10-12 18:18:05] 2025-10-12 17:25:46,571 | INFO     | neventsw: 0
[2025-10-12 18:18:05] 2025-10-12 17:25:46,572 | INFO     | pid: 24323
[2025-10-12 18:18:05] 2025-10-12 17:25:46,572 | INFO     | pgrp: 24323
[2025-10-12 18:18:05] 2025-10-12 17:25:46,572 | INFO     | corecount: 9
[2025-10-12 18:18:05] 2025-10-12 17:25:46,572 | INFO     | event service: False
[2025-10-12 18:18:05] 2025-10-12 17:25:46,572 | INFO     | sizes: {0: 2347979, 1: 2348580, 3: 2348664, 6: 2348692, 9: 2348891, 12: 2348919, 13: 2349075, 24: 2349131, 36: 2349159, 47: 2349187, 60: 2349243, 63: 2349813, 74: 
[2025-10-12 18:18:05] 2025-10-12 17:25:46,572 | INFO     | --------------------------------------------------
[2025-10-12 18:18:05] 2025-10-12 17:25:46,572 | INFO     | 
[2025-10-12 18:18:05] 2025-10-12 17:25:46,573 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-12 18:18:05] 2025-10-12 17:25:46,840 | INFO     | PID=7392 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 18:18:05] 2025-10-12 17:25:46,840 | INFO     | .. there are 20 such processes running
[2025-10-12 18:18:05] 2025-10-12 17:25:47,016 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 18:18:05] 2025-10-12 17:25:47,017 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 18:18:05] 2025-10-12 17:25:47,033 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 18:18:05] 2025-10-12 17:25:47,033 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 18:18:05] 2025-10-12 17:25:47,033 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 18:18:05] 2025-10-12 17:25:47,033 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 18:18:05] 2025-10-12 17:25:47,033 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 18:18:05] 2025-10-12 17:25:47,034 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 18:18:05] 2025-10-12 17:25:47,034 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 18:18:05] 2025-10-12 17:25:47,034 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 18:18:05] 2025-10-12 17:25:47,035 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 18:18:05] 2025-10-12 17:25:47,035 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 18:18:05] 2025-10-12 17:25:47,035 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 18:18:05] 2025-10-12 17:25:47,035 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 18:18:05] 2025-10-12 17:25:47,035 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 18:18:05] 2025-10-12 17:25:47,035 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 18:18:05] 2025-10-12 17:25:47,036 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 18:18:05] 2025-10-12 17:25:47,036 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 18:18:05] 2025-10-12 17:25:47,036 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 18:18:05] 2025-10-12 17:25:47,036 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 18:18:05] 2025-10-12 17:25:47,036 | INFO     | job 6839083799 has completed (purged errors)
[2025-10-12 18:18:05] 2025-10-12 17:25:47,037 | INFO     | overall cleanup function is called
[2025-10-12 18:18:05] 2025-10-12 17:25:48,097 | INFO     | --- collectZombieJob: --- 10, [24323]
[2025-10-12 18:18:05] 2025-10-12 17:25:48,097 | INFO     | zombie collector waiting for pid 24323
[2025-10-12 18:18:05] 2025-10-12 17:25:48,098 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 18:18:05] 2025-10-12 17:25:48,098 | INFO     | collected zombie processes
[2025-10-12 18:18:05] 2025-10-12 17:25:48,098 | INFO     | will attempt to kill all subprocesses of pid=24323
[2025-10-12 18:18:05] 2025-10-12 17:25:50,290 | INFO     | process IDs to be killed: [24323] (in reverse order)
[2025-10-12 18:18:05] 2025-10-12 17:25:51,081 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 18:18:05] 2025-10-12 17:25:51,081 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 18:18:05] 2025-10-12 17:25:51,357 | INFO     | did not find any defunct processes belonging to 24323
[2025-10-12 18:18:05] 2025-10-12 17:25:51,646 | INFO     | did not find any defunct processes belonging to 24323
[2025-10-12 18:18:05] 2025-10-12 17:25:51,648 | INFO     | ready for new job
[2025-10-12 18:18:05] 2025-10-12 17:25:51,648 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 18:18:05] 2025-10-12 17:25:51,664 | INFO     | ***************************************
[2025-10-12 18:18:05] 2025-10-12 17:25:51,664 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-12 18:18:05] 2025-10-12 17:25:51,664 | INFO     | ***************************************
[2025-10-12 18:18:05] 2025-10-12 17:25:51,664 | INFO     | 
[2025-10-12 18:18:05] 2025-10-12 17:25:51,667 | INFO     | architecture information:
[2025-10-12 18:18:05] 2025-10-12 17:25:51,719 | INFO     | executing command: cat /etc/os-release
[2025-10-12 18:18:05] 2025-10-12 17:25:51,940 | INFO     | cat /etc/os-release:
[2025-10-12 18:18:05] NAME="CentOS Linux"
[2025-10-12 18:18:05] VERSION="7 (Core)"
[2025-10-12 18:18:05] ID="centos"
[2025-10-12 18:18:05] ID_LIKE="rhel fedora"
[2025-10-12 18:18:05] VERSION_ID="7"
[2025-10-12 18:18:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 18:18:05] ANSI_COLOR="0;31"
[2025-10-12 18:18:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 18:18:05] HOME_URL="https://www.centos.org/"
[2025-10-12 18:18:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 18:18:05] 
[2025-10-12 18:18:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 18:18:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 18:18:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 18:18:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 18:18:05] 
[2025-10-12 18:18:05] 2025-10-12 17:25:51,940 | INFO     | ***************************************
[2025-10-12 18:18:05] 2025-10-12 17:25:52,444 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-12 18:18:05] 2025-10-12 17:25:52,669 | INFO     | sufficient remaining disk space (51860471808 B)
[2025-10-12 18:18:05] 2025-10-12 17:25:52,670 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 18:18:05] 2025-10-12 17:25:52,670 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 18:18:05] 2025-10-12 17:25:52,670 | INFO     | update_server=False
[2025-10-12 18:18:05] 2025-10-12 17:25:52,670 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 18:18:05] 2025-10-12 17:25:52,693 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:18:05] 2025-10-12 17:25:52,693 | INFO     | aborting loop
[2025-10-12 18:18:05] 2025-10-12 17:25:53,148 | INFO     | all payload control threads have been joined
[2025-10-12 18:18:05] 2025-10-12 17:25:53,425 | INFO     | all data control threads have been joined
[2025-10-12 18:18:05] 2025-10-12 17:25:53,676 | INFO     | [job] retrieve thread has finished
[2025-10-12 18:18:05] 2025-10-12 17:25:53,700 | INFO     | [job] job monitor thread has finished
[2025-10-12 18:18:05] 2025-10-12 17:25:53,718 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 18:18:05] 2025-10-12 17:25:53,728 | INFO     | [data] copytool_in thread has finished
[2025-10-12 18:18:05] 2025-10-12 17:25:53,733 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 18:18:05] 2025-10-12 17:25:53,757 | INFO     | [job] validate thread has finished
[2025-10-12 18:18:05] 2025-10-12 17:25:53,813 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 18:18:05] 2025-10-12 17:25:53,903 | INFO     | [payload] validate_post thread has finished
[2025-10-12 18:18:05] 2025-10-12 17:25:54,043 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 18:18:05] 2025-10-12 17:25:54,115 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 18:18:05] 2025-10-12 17:25:54,154 | INFO     | [payload] control thread has finished
[2025-10-12 18:18:05] 2025-10-12 17:25:54,221 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 18:18:05] 2025-10-12 17:25:54,243 | INFO     | all job control threads have been joined
[2025-10-12 18:18:05] 2025-10-12 17:25:54,434 | INFO     | [payload] failed_post thread has finished
[2025-10-12 18:18:05] 2025-10-12 17:25:54,454 | INFO     | [data] control thread has finished
[2025-10-12 18:18:05] 2025-10-12 17:25:55,251 | INFO     | [job] control thread has finished
[2025-10-12 18:18:05] 2025-10-12 17:25:55,659 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:18:05] 2025-10-12 17:25:56,122 | INFO     | [data] copytool_out thread has finished
[2025-10-12 18:18:05] 2025-10-12 17:25:56,665 | INFO     | [job] queue monitor thread has finished
[2025-10-12 18:18:05] 2025-10-12 17:25:58,105 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 18:18:05] 2025-10-12 17:26:22,153 | INFO     | PID=7392 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 18:18:05] 2025-10-12 17:26:22,154 | INFO     | .. there are 20 such processes running
[2025-10-12 18:18:05] 2025-10-12 17:26:22,154 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 18:18:05] 2025-10-12 17:26:22,154 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 18:18:05] 2025-10-12 17:26:22,154 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 18:18:05] 2025-10-12 17:26:49,077 | INFO     | [monitor] cgroup control has ended
[2025-10-12 18:18:05] 2025-10-12 17:26:50,495 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139662958282560)>', '<ExcThread(monitor, started 139662685345536)>']
[2025-10-12 18:18:05] 2025-10-12 17:26:50,671 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 18:18:05] 2025-10-12 17:26:50,671 | INFO     | [monitor] control thread has ended
[2025-10-12 18:18:05] 2025-10-12 17:26:55,521 | INFO     | all workflow threads have been joined
[2025-10-12 18:18:05] 2025-10-12 17:26:55,521 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 18:18:05] 2025-10-12 17:26:55,522 | INFO     | traces error code: 0
[2025-10-12 18:18:05] 2025-10-12 17:26:55,522 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 18:18:05] 2025-10-12 17:26:58,907 [wrapper] ==== pilot stdout END ====
[2025-10-12 18:18:05] 2025-10-12 17:26:58,927 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 18:18:05] 2025-10-12 17:26:58,946 [wrapper] pilotpid: 7392
[2025-10-12 18:18:05] 2025-10-12 17:26:59,024 [wrapper] Pilot exit status: 0
[2025-10-12 18:18:05] 2025-10-12 17:26:59,341 [wrapper] pandaids: 6839083799
[2025-10-12 18:18:05] 2025-10-12 17:27:00,505 [wrapper] cleanup supervisor_pilot 2630284 7393
[2025-10-12 18:18:05] 2025-10-12 17:27:00,595 [wrapper] Test setup, not cleaning
[2025-10-12 18:18:05] 2025-10-12 17:27:00,615 [wrapper] apfmon messages muted
[2025-10-12 18:18:05] 2025-10-12 17:27:00,670 [wrapper] ==== wrapper stdout END ====
[2025-10-12 18:18:05] 2025-10-12 17:27:00,737 [wrapper] ==== wrapper stderr END ====
[2025-10-12 18:18:05]  *** Error codes and diagnostics ***
[2025-10-12 18:18:05]     "exeErrorCode": 0,
[2025-10-12 18:18:05]     "exeErrorDiag": "",
[2025-10-12 18:18:05]     "pilotErrorCode": 0,
[2025-10-12 18:18:05]     "pilotErrorDiag": "",
[2025-10-12 18:18:05]  *** Listing of results directory ***
[2025-10-12 18:18:05] total 414276
[2025-10-12 18:18:05] -rw-r--r--. 1 boincer umatlas    563267 Oct  7 03:02 pilot3.tar.gz
[2025-10-12 18:18:05] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 18:59 queuedata.json
[2025-10-12 18:18:05] -rwx------. 1 boincer umatlas     36292 Oct 11 19:00 runpilot2-wrapper.sh
[2025-10-12 18:18:05] -rw-r--r--. 1 boincer umatlas       100 Oct 12 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 18:18:05] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 00:03 run_atlas
[2025-10-12 18:18:05] -rw-r--r--. 1 boincer umatlas       105 Oct 12 00:03 job.xml
[2025-10-12 18:18:05] -rw-r--r--. 2 boincer umatlas 221035819 Oct 12 00:03 EVNT.46676267._001294.pool.root.1
[2025-10-12 18:18:05] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 00:03 start_atlas.sh
[2025-10-12 18:18:05] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 00:03 shared
[2025-10-12 18:18:05] -rw-r--r--. 2 boincer umatlas    576713 Oct 12 00:03 input.tar.gz
[2025-10-12 18:18:05] -rw-r--r--. 1 boincer umatlas         0 Oct 12 00:03 boinc_lockfile
[2025-10-12 18:18:05] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 00:03 pandaJob.out
[2025-10-12 18:18:05] -rw-------. 1 boincer umatlas    975512 Oct 12 00:04 agis_schedconf.cvmfs.json
[2025-10-12 18:18:05] drwx------. 4 boincer umatlas      4096 Oct 12 00:05 pilot3
[2025-10-12 18:18:05] -rw-------. 1 boincer umatlas 188699126 Oct 12 13:22 HITS.46676269._066563.pool.root.1
[2025-10-12 18:18:05] -rw-r--r--. 1 boincer umatlas       530 Oct 12 13:22 boinc_task_state.xml
[2025-10-12 18:18:05] -rw-------. 1 boincer umatlas      1055 Oct 12 13:23 memory_monitor_summary.json
[2025-10-12 18:18:05] -rw-------. 1 boincer umatlas   1560580 Oct 12 13:24 agis_ddmendpoints.agis.ALL.json
[2025-10-12 18:18:05] -rw-------. 1 boincer umatlas    793155 Oct 12 13:24 log.46676269._066563.job.log.tgz.1
[2025-10-12 18:18:05] -rw-------. 1 boincer umatlas        95 Oct 12 13:25 pilot_heartbeat.json
[2025-10-12 18:18:05] -rw-------. 1 boincer umatlas      7825 Oct 12 13:25 heartbeat.json
[2025-10-12 18:18:05] -rw-------. 1 boincer umatlas      4821 Oct 12 13:26 pilotlog.txt
[2025-10-12 18:18:05] -rw-------. 1 boincer umatlas   4492444 Oct 12 13:27 log.46676269._066563.job.log.1
[2025-10-12 18:18:05] -rw-------. 1 boincer umatlas       357 Oct 12 13:27 output.list
[2025-10-12 18:18:05] -rw-r--r--. 1 boincer umatlas       620 Oct 12 13:27 runtime_log
[2025-10-12 18:18:05] -rw-------. 1 boincer umatlas   5304320 Oct 12 13:27 result.tar.gz
[2025-10-12 18:18:05] -rw-r--r--. 1 boincer umatlas      8704 Oct 12 13:27 runtime_log.err
[2025-10-12 18:18:05] -rw-------. 1 boincer umatlas       659 Oct 12 13:27 mBzLDmGlxR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbshNDmC1gxlm.diag
[2025-10-12 18:18:05] -rw-r--r--. 1 boincer umatlas      6523 Oct 12 18:10 init_data.xml
[2025-10-12 18:18:05] -rw-r--r--. 1 boincer umatlas        27 Oct 12 18:17 wrapper_checkpoint.txt
[2025-10-12 18:18:05] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 18:18 boinc_mmap_file
[2025-10-12 18:18:05] -rw-r--r--. 1 boincer umatlas     21206 Oct 12 18:18 stderr.txt
[2025-10-12 18:18:05] HITS file was successfully produced:
[2025-10-12 18:18:05] -rw-------. 1 boincer umatlas 188699126 Oct 12 13:22 shared/HITS.pool.root.1
[2025-10-12 18:18:05]  *** Contents of shared directory: ***
[2025-10-12 18:18:05] total 405904
[2025-10-12 18:18:05] -rw-r--r--. 2 boincer umatlas 221035819 Oct 12 00:03 ATLAS.root_0
[2025-10-12 18:18:05] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 00:03 start_atlas.sh
[2025-10-12 18:18:05] -rw-r--r--. 2 boincer umatlas    576713 Oct 12 00:03 input.tar.gz
[2025-10-12 18:18:05] -rw-------. 1 boincer umatlas 188699126 Oct 12 13:22 HITS.pool.root.1
[2025-10-12 18:18:05] -rw-------. 1 boincer umatlas   5304320 Oct 12 13:27 result.tar.gz
18:18:28 (4191001): run_atlas exited; CPU time 77876.806311
18:18:28 (4191001): called boinc_finish(0)

</stderr_txt>
]]>

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