Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:17 (864846): wrapper (7.7.26015): starting
00:02:17 (864846): wrapper: running run_atlas (--nthreads 9)
[2025-10-12 00:02:17] Arguments: --nthreads 9
[2025-10-12 00:02:17] Threads: 9
[2025-10-12 00:02:17] Checking for CVMFS
[2025-10-12 00:02:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 00:02:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 00:02:18] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 00:02:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 00:02:20] 2.13.2.0 1056763 128756 321340 151585 -877 855 32866706 32935936 29283 16776704 0 102704811 99.647 94012046 27835 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 00:02:20] CVMFS is ok
[2025-10-12 00:02:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 00:02:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 00:02:20] Further information can be found at the LHC@home message board.
[2025-10-12 00:02:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 00:02:20] Checking for apptainer binary...
[2025-10-12 00:02:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 00:02:20] Running /usr/bin/apptainer --version
[2025-10-12 00:02:20] apptainer version 1.4.3-1.el9
[2025-10-12 00:02:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 00:02:21] c-4-39.aglt2.org
[2025-10-12 00:02:21] apptainer works
[2025-10-12 00:02:21] Set ATHENA_PROC_NUMBER=9
[2025-10-12 00:02:21] Set ATHENA_CORE_NUMBER=9
[2025-10-12 00:02:21] Starting ATLAS job with PandaID=6838990760
[2025-10-12 00:02:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 21:37:03]  *** The last 200 lines of the pilot log: ***
[2025-10-12 21:37:03] 2025-10-13 01:36:02,469 | INFO     | time since job start (77515s) is within the limit (172800.0s)
[2025-10-12 21:37:03] 2025-10-13 01:36:02,476 | INFO     | sum of square deviations: 629179427533.5017
[2025-10-12 21:37:03] 2025-10-13 01:36:02,749 | INFO     | sum of deviations: 2131509722561.49
[2025-10-12 21:37:03] 2025-10-13 01:36:02,749 | INFO     | mean x: 1760280685.7401264
[2025-10-12 21:37:03] 2025-10-13 01:36:02,750 | INFO     | mean y: 2179315.439178515
[2025-10-12 21:37:03] 2025-10-13 01:36:02,750 | INFO     | -- intersect: -5961231489.012945
[2025-10-12 21:37:03] 2025-10-13 01:36:02,750 | INFO     | intersect: -5961231489.012945
[2025-10-12 21:37:03] 2025-10-13 01:36:02,752 | INFO     | chi2: 9.63958042698993
[2025-10-12 21:37:03] 2025-10-13 01:36:02,754 | INFO     | sum of square deviations: 621754106610.7118
[2025-10-12 21:37:03] 2025-10-13 01:36:02,915 | INFO     | sum of deviations: 2138860581953.0466
[2025-10-12 21:37:03] 2025-10-13 01:36:02,915 | INFO     | mean x: 1760280533.2410786
[2025-10-12 21:37:03] 2025-10-13 01:36:02,915 | INFO     | mean y: 2179467.40444092
[2025-10-12 21:37:03] 2025-10-13 01:36:02,915 | INFO     | -- intersect: -6053260465.678211
[2025-10-12 21:37:03] 2025-10-13 01:36:02,915 | INFO     | intersect: -6053260465.678211
[2025-10-12 21:37:03] 2025-10-13 01:36:02,917 | INFO     | chi2: 9.604690812293823
[2025-10-12 21:37:03] 2025-10-13 01:36:02,917 | INFO     | current chi2=9.604690812293823 (change=0.36194121684403807 %)
[2025-10-12 21:37:03] 2025-10-13 01:36:02,917 | INFO     | right removable region: 1260
[2025-10-12 21:37:03] 2025-10-13 01:36:02,920 | INFO     | sum of square deviations: 621753998152.1947
[2025-10-12 21:37:03] 2025-10-13 01:36:03,119 | INFO     | sum of deviations: 1775991210918.8923
[2025-10-12 21:37:03] 2025-10-13 01:36:03,137 | INFO     | mean x: 1760280838.2402854
[2025-10-12 21:37:03] 2025-10-13 01:36:03,137 | INFO     | mean y: 2186614.970658208
[2025-10-12 21:37:03] 2025-10-13 01:36:03,137 | INFO     | -- intersect: -5025916632.864728
[2025-10-12 21:37:03] 2025-10-13 01:36:03,138 | INFO     | intersect: -5025916632.864728
[2025-10-12 21:37:03] 2025-10-13 01:36:03,139 | INFO     | chi2: 5.934569307463465
[2025-10-12 21:37:03] 2025-10-13 01:36:03,140 | INFO     | current chi2=5.934569307463465 (change=38.43539817514026 %)
[2025-10-12 21:37:03] 2025-10-13 01:36:03,161 | INFO     | sum of square deviations: 614387297831.8655
[2025-10-12 21:37:03] 2025-10-13 01:36:03,370 | INFO     | sum of deviations: 1520087441356.1992
[2025-10-12 21:37:03] 2025-10-13 01:36:03,370 | INFO     | mean x: 1760280990.7396498
[2025-10-12 21:37:03] 2025-10-13 01:36:03,371 | INFO     | mean y: 2191911.6305732485
[2025-10-12 21:37:03] 2025-10-13 01:36:03,371 | INFO     | -- intersect: -4353010477.357699
[2025-10-12 21:37:03] 2025-10-13 01:36:03,386 | INFO     | intersect: -4353010477.357699
[2025-10-12 21:37:03] 2025-10-13 01:36:03,388 | INFO     | chi2: 4.118656318045447
[2025-10-12 21:37:03] 2025-10-13 01:36:03,388 | INFO     | current chi2=4.118656318045447 (change=30.59890103792839 %)
[2025-10-12 21:37:03] 2025-10-13 01:36:03,405 | INFO     | sum of square deviations: 607079094437.014
[2025-10-12 21:37:03] 2025-10-13 01:36:03,603 | INFO     | sum of deviations: 1333353930966.956
[2025-10-12 21:37:03] 2025-10-13 01:36:03,604 | INFO     | mean x: 1760281143.2382095
[2025-10-12 21:37:03] 2025-10-13 01:36:03,620 | INFO     | mean y: 2195807.3021582733
[2025-10-12 21:37:03] 2025-10-13 01:36:03,620 | INFO     | -- intersect: -3863985392.892653
[2025-10-12 21:37:03] 2025-10-13 01:36:03,620 | INFO     | intersect: -3863985392.892653
[2025-10-12 21:37:03] 2025-10-13 01:36:03,622 | INFO     | chi2: 3.180717009578629
[2025-10-12 21:37:03] 2025-10-13 01:36:03,623 | INFO     | current chi2=3.180717009578629 (change=22.772944281787698 %)
[2025-10-12 21:37:03] 2025-10-13 01:36:03,623 | INFO     | left removable region: 30
[2025-10-12 21:37:03] 2025-10-13 01:36:03,643 | INFO     | sum of square deviations: 577017120578.6538
[2025-10-12 21:37:03] 2025-10-13 01:36:03,888 | INFO     | sum of deviations: 916474961689.2109
[2025-10-12 21:37:03] 2025-10-13 01:36:03,888 | INFO     | mean x: 1760281417.7365854
[2025-10-12 21:37:03] 2025-10-13 01:36:03,889 | INFO     | mean y: 2205537.664227642
[2025-10-12 21:37:03] 2025-10-13 01:36:03,889 | INFO     | -- intersect: -2793645377.9282546
[2025-10-12 21:37:03] 2025-10-13 01:36:03,889 | INFO     | intersect: -2793645377.9282546
[2025-10-12 21:37:03] 2025-10-13 01:36:03,891 | INFO     | chi2: 1.434188023337864
[2025-10-12 21:37:03] 2025-10-13 01:36:03,915 | INFO     | -- intersect: -2793645377.9282546
[2025-10-12 21:37:03] 2025-10-13 01:36:03,915 | INFO     | current memory leak: 1.59 B/s (using 1230 data points, chi2=1.43)
[2025-10-12 21:37:03] 2025-10-13 01:36:03,917 | INFO     | could have reported an average CPU frequency of 2601 MHz (22 samples)
[2025-10-12 21:37:03] 2025-10-13 01:36:03,917 | INFO     | ..............................
[2025-10-12 21:37:03] 2025-10-13 01:36:03,917 | INFO     | . Timing measurements:
[2025-10-12 21:37:03] 2025-10-13 01:36:03,917 | INFO     | . get job = 0 s
[2025-10-12 21:37:03] 2025-10-13 01:36:03,917 | INFO     | . initial setup = 6 s
[2025-10-12 21:37:03] 2025-10-13 01:36:03,918 | INFO     | . payload setup = 65 s
[2025-10-12 21:37:03] 2025-10-13 01:36:03,918 | INFO     | . stage-in = 1 s
[2025-10-12 21:37:03] 2025-10-13 01:36:03,918 | INFO     | . payload execution = 77278 s
[2025-10-12 21:37:03] 2025-10-13 01:36:03,918 | INFO     | . stage-out = 5 s
[2025-10-12 21:37:03] 2025-10-13 01:36:03,918 | INFO     | . log creation = 0 s
[2025-10-12 21:37:03] 2025-10-13 01:36:03,918 | INFO     | ..............................
[2025-10-12 21:37:03] 2025-10-13 01:36:04,486 | INFO     | time since job start (77517s) is within the limit (172800.0s)
[2025-10-12 21:37:03] 2025-10-13 01:36:04,745 | INFO     | 
[2025-10-12 21:37:03] 2025-10-13 01:36:04,746 | INFO     | job summary report
[2025-10-12 21:37:03] 2025-10-13 01:36:04,746 | INFO     | --------------------------------------------------
[2025-10-12 21:37:03] 2025-10-13 01:36:04,746 | INFO     | PanDA job id: 6838990760
[2025-10-12 21:37:03] 2025-10-13 01:36:04,746 | INFO     | task id: 46676269
[2025-10-12 21:37:03] 2025-10-13 01:36:04,746 | INFO     | errors: (none)
[2025-10-12 21:37:03] 2025-10-13 01:36:04,746 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 21:37:03] 2025-10-13 01:36:04,746 | INFO     | pilot state: finished 
[2025-10-12 21:37:03] 2025-10-13 01:36:04,746 | INFO     | transexitcode: 0
[2025-10-12 21:37:03] 2025-10-13 01:36:04,746 | INFO     | exeerrorcode: 0
[2025-10-12 21:37:03] 2025-10-13 01:36:04,747 | INFO     | exeerrordiag: 
[2025-10-12 21:37:03] 2025-10-13 01:36:04,747 | INFO     | exitcode: 0
[2025-10-12 21:37:03] 2025-10-13 01:36:04,747 | INFO     | exitmsg: OK
[2025-10-12 21:37:03] 2025-10-13 01:36:04,747 | INFO     | cpuconsumptiontime: 51112 s
[2025-10-12 21:37:03] 2025-10-13 01:36:04,747 | INFO     | nevents: 400
[2025-10-12 21:37:03] 2025-10-13 01:36:04,747 | INFO     | neventsw: 0
[2025-10-12 21:37:03] 2025-10-13 01:36:04,747 | INFO     | pid: 915035
[2025-10-12 21:37:03] 2025-10-13 01:36:04,747 | INFO     | pgrp: 915035
[2025-10-12 21:37:03] 2025-10-13 01:36:04,747 | INFO     | corecount: 9
[2025-10-12 21:37:03] 2025-10-13 01:36:04,747 | INFO     | event service: False
[2025-10-12 21:37:03] 2025-10-13 01:36:04,747 | INFO     | sizes: {0: 2348686, 4: 2348885, 5: 2348941, 17: 2348941, 29: 2348969, 40: 2348997, 52: 2349153, 66: 2349471, 78: 2349471, 77350: 2387483, 77351: 2387482, 77357: 23
[2025-10-12 21:37:03] 2025-10-13 01:36:04,748 | INFO     | --------------------------------------------------
[2025-10-12 21:37:03] 2025-10-13 01:36:04,748 | INFO     | 
[2025-10-12 21:37:03] 2025-10-13 01:36:04,801 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-12 21:37:03] 2025-10-13 01:36:04,947 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 21:37:03] 2025-10-13 01:36:04,947 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 21:37:03] 2025-10-13 01:36:04,948 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 21:37:03] 2025-10-13 01:36:04,948 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 21:37:03] 2025-10-13 01:36:04,948 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 21:37:03] 2025-10-13 01:36:04,948 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 21:37:03] 2025-10-13 01:36:04,948 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 21:37:03] 2025-10-13 01:36:04,948 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 21:37:03] 2025-10-13 01:36:04,948 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 21:37:03] 2025-10-13 01:36:04,948 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 21:37:03] 2025-10-13 01:36:04,949 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 21:37:03] 2025-10-13 01:36:04,949 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 21:37:03] 2025-10-13 01:36:04,949 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 21:37:03] 2025-10-13 01:36:04,949 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 21:37:03] 2025-10-13 01:36:04,949 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 21:37:03] 2025-10-13 01:36:04,949 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 21:37:03] 2025-10-13 01:36:04,949 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 21:37:03] 2025-10-13 01:36:04,949 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 21:37:03] 2025-10-13 01:36:04,950 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 21:37:03] 2025-10-13 01:36:04,950 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 21:37:03] 2025-10-13 01:36:04,950 | INFO     | job 6838990760 has completed (purged errors)
[2025-10-12 21:37:03] 2025-10-13 01:36:04,950 | INFO     | overall cleanup function is called
[2025-10-12 21:37:03] 2025-10-13 01:36:05,960 | INFO     | --- collectZombieJob: --- 10, [915035]
[2025-10-12 21:37:03] 2025-10-13 01:36:05,960 | INFO     | zombie collector waiting for pid 915035
[2025-10-12 21:37:03] 2025-10-13 01:36:05,960 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 21:37:03] 2025-10-13 01:36:05,961 | INFO     | collected zombie processes
[2025-10-12 21:37:03] 2025-10-13 01:36:05,961 | INFO     | will attempt to kill all subprocesses of pid=915035
[2025-10-12 21:37:03] 2025-10-13 01:36:08,000 | INFO     | process IDs to be killed: [915035] (in reverse order)
[2025-10-12 21:37:03] 2025-10-13 01:36:08,295 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 21:37:03] 2025-10-13 01:36:08,295 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 21:37:03] 2025-10-13 01:36:08,320 | INFO     | did not find any defunct processes belonging to 915035
[2025-10-12 21:37:03] 2025-10-13 01:36:08,354 | INFO     | did not find any defunct processes belonging to 915035
[2025-10-12 21:37:03] 2025-10-13 01:36:08,354 | INFO     | ready for new job
[2025-10-12 21:37:03] 2025-10-13 01:36:08,355 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 21:37:03] 2025-10-13 01:36:08,362 | INFO     | ***************************************
[2025-10-12 21:37:03] 2025-10-13 01:36:08,363 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 21:37:03] 2025-10-13 01:36:08,363 | INFO     | ***************************************
[2025-10-12 21:37:03] 2025-10-13 01:36:08,363 | INFO     | 
[2025-10-12 21:37:03] 2025-10-13 01:36:08,379 | INFO     | architecture information:
[2025-10-12 21:37:03] 2025-10-13 01:36:08,383 | INFO     | executing command: cat /etc/os-release
[2025-10-12 21:37:03] 2025-10-13 01:36:08,428 | INFO     | cat /etc/os-release:
[2025-10-12 21:37:03] NAME="CentOS Linux"
[2025-10-12 21:37:03] VERSION="7 (Core)"
[2025-10-12 21:37:03] ID="centos"
[2025-10-12 21:37:03] ID_LIKE="rhel fedora"
[2025-10-12 21:37:03] VERSION_ID="7"
[2025-10-12 21:37:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 21:37:03] ANSI_COLOR="0;31"
[2025-10-12 21:37:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 21:37:03] HOME_URL="https://www.centos.org/"
[2025-10-12 21:37:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 21:37:03] 
[2025-10-12 21:37:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 21:37:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 21:37:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 21:37:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 21:37:03] 
[2025-10-12 21:37:03] 2025-10-13 01:36:08,429 | INFO     | ***************************************
[2025-10-12 21:37:03] 2025-10-13 01:36:08,932 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-12 21:37:03] 2025-10-13 01:36:08,993 | INFO     | sufficient remaining disk space (75002544128 B)
[2025-10-12 21:37:03] 2025-10-13 01:36:08,994 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 21:37:03] 2025-10-13 01:36:08,994 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 21:37:03] 2025-10-13 01:36:08,994 | INFO     | update_server=False
[2025-10-12 21:37:03] 2025-10-13 01:36:08,994 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 21:37:03] 2025-10-13 01:36:09,219 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 21:37:03] 2025-10-13 01:36:09,219 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 21:37:03] 2025-10-13 01:36:09,219 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:37:03] 2025-10-13 01:36:09,220 | INFO     | will abort loop
[2025-10-12 21:37:03] 2025-10-13 01:36:09,251 | INFO     | all job control threads have been joined
[2025-10-12 21:37:03] 2025-10-13 01:36:09,314 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:37:03] 2025-10-13 01:36:09,757 | INFO     | all data control threads have been joined
[2025-10-12 21:37:03] 2025-10-13 01:36:10,000 | INFO     | [job] retrieve thread has finished
[2025-10-12 21:37:03] 2025-10-13 01:36:10,212 | INFO     | [data] copytool_in thread has finished
[2025-10-12 21:37:03] 2025-10-13 01:36:10,225 | INFO     | [job] job monitor thread has finished
[2025-10-12 21:37:03] 2025-10-13 01:36:10,307 | INFO     | [job] control thread has finished
[2025-10-12 21:37:03] 2025-10-13 01:36:10,320 | INFO     | [job] queue monitor thread has finished
[2025-10-12 21:37:03] 2025-10-13 01:36:10,350 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 21:37:03] 2025-10-13 01:36:10,374 | INFO     | all payload control threads have been joined
[2025-10-12 21:37:03] 2025-10-13 01:36:10,426 | INFO     | [payload] validate_post thread has finished
[2025-10-12 21:37:03] 2025-10-13 01:36:10,764 | INFO     | [data] control thread has finished
[2025-10-12 21:37:03] 2025-10-13 01:36:10,859 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 21:37:03] 2025-10-13 01:36:10,866 | INFO     | [payload] failed_post thread has finished
[2025-10-12 21:37:03] 2025-10-13 01:36:10,882 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 21:37:03] 2025-10-13 01:36:11,177 | INFO     | [job] validate thread has finished
[2025-10-12 21:37:03] 2025-10-13 01:36:11,380 | INFO     | [payload] control thread has finished
[2025-10-12 21:37:03] 2025-10-13 01:36:11,397 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 21:37:03] 2025-10-13 01:36:11,403 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 21:37:03] 2025-10-13 01:36:12,175 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 21:37:03] 2025-10-13 01:36:12,384 | INFO     | [data] copytool_out thread has finished
[2025-10-12 21:37:03] 2025-10-13 01:36:16,184 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 21:37:03] 2025-10-13 01:36:41,077 | INFO     | PID=882212 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 21:37:03] 2025-10-13 01:36:41,077 | INFO     | .. there are 33 such processes running
[2025-10-12 21:37:03] 2025-10-13 01:36:41,078 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 21:37:03] 2025-10-13 01:36:41,079 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 21:37:03] 2025-10-13 01:36:41,079 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 21:37:03] 2025-10-13 01:36:55,596 | INFO     | [monitor] cgroup control has ended
[2025-10-12 21:37:03] 2025-10-13 01:36:57,543 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140305088816960)>', '<ExcThread(monitor, started 140304158025472)>']
[2025-10-12 21:37:03] 2025-10-13 01:36:58,240 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 21:37:03] 2025-10-13 01:36:58,240 | INFO     | [monitor] control thread has ended
[2025-10-12 21:37:03] 2025-10-13 01:37:02,569 | INFO     | all workflow threads have been joined
[2025-10-12 21:37:03] 2025-10-13 01:37:02,569 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 21:37:03] 2025-10-13 01:37:02,569 | INFO     | traces error code: 0
[2025-10-12 21:37:03] 2025-10-13 01:37:02,570 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 21:37:03] 2025-10-13 01:37:02,726 [wrapper] ==== pilot stdout END ====
[2025-10-12 21:37:03] 2025-10-13 01:37:02,732 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 21:37:03] 2025-10-13 01:37:02,735 [wrapper] pilotpid: 882212
[2025-10-12 21:37:03] 2025-10-13 01:37:02,786 [wrapper] Pilot exit status: 0
[2025-10-12 21:37:03] 2025-10-13 01:37:02,936 [wrapper] pandaids: 6838990760
[2025-10-12 21:37:03] 2025-10-13 01:37:03,096 [wrapper] cleanup supervisor_pilot  328852 882213
[2025-10-12 21:37:03] 2025-10-13 01:37:03,101 [wrapper] Test setup, not cleaning
[2025-10-12 21:37:03] 2025-10-13 01:37:03,104 [wrapper] apfmon messages muted
[2025-10-12 21:37:03] 2025-10-13 01:37:03,107 [wrapper] ==== wrapper stdout END ====
[2025-10-12 21:37:03] 2025-10-13 01:37:03,110 [wrapper] ==== wrapper stderr END ====
[2025-10-12 21:37:03]  *** Error codes and diagnostics ***
[2025-10-12 21:37:03]     "exeErrorCode": 0,
[2025-10-12 21:37:03]     "exeErrorDiag": "",
[2025-10-12 21:37:03]     "pilotErrorCode": 0,
[2025-10-12 21:37:03]     "pilotErrorDiag": "",
[2025-10-12 21:37:03]  *** Listing of results directory ***
[2025-10-12 21:37:03] total 422592
[2025-10-12 21:37:03] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 18:51 queuedata.json
[2025-10-12 21:37:03] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 18:51 pilot3.tar.gz
[2025-10-12 21:37:03] -rwx------. 1 boincer umatlas     36292 Oct 11 18:52 runpilot2-wrapper.sh
[2025-10-12 21:37:03] -rw-r--r--. 1 boincer umatlas       100 Oct 12 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 21:37:03] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 00:02 run_atlas
[2025-10-12 21:37:03] -rw-r--r--. 1 boincer umatlas       105 Oct 12 00:02 job.xml
[2025-10-12 21:37:03] -rw-r--r--. 2 boincer umatlas 222468850 Oct 12 00:02 EVNT.46676267._002665.pool.root.1
[2025-10-12 21:37:03] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 00:02 start_atlas.sh
[2025-10-12 21:37:03] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 00:02 shared
[2025-10-12 21:37:03] -rw-r--r--. 2 boincer umatlas    569682 Oct 12 00:02 input.tar.gz
[2025-10-12 21:37:03] -rw-r--r--. 1 boincer umatlas         0 Oct 12 00:02 boinc_lockfile
[2025-10-12 21:37:03] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 00:02 pandaJob.out
[2025-10-12 21:37:03] -rw-------. 1 boincer umatlas    975520 Oct 12 00:04 agis_schedconf.cvmfs.json
[2025-10-12 21:37:03] drwx------. 5 boincer umatlas      4096 Oct 12 00:04 pilot3
[2025-10-12 21:37:03] -rw-r--r--. 1 boincer umatlas      6657 Oct 12 21:28 init_data.xml
[2025-10-12 21:37:03] -rw-------. 1 boincer umatlas 193343415 Oct 12 21:34 HITS.46676269._066249.pool.root.1
[2025-10-12 21:37:03] -rw-r--r--. 1 boincer umatlas       531 Oct 12 21:34 boinc_task_state.xml
[2025-10-12 21:37:03] -rw-------. 1 boincer umatlas      1045 Oct 12 21:35 memory_monitor_summary.json
[2025-10-12 21:37:03] -rw-------. 1 boincer umatlas   1560580 Oct 12 21:35 agis_ddmendpoints.agis.ALL.json
[2025-10-12 21:37:03] -rw-------. 1 boincer umatlas    945849 Oct 12 21:35 log.46676269._066249.job.log.tgz.1
[2025-10-12 21:37:03] -rw-------. 1 boincer umatlas      7830 Oct 12 21:36 heartbeat.json
[2025-10-12 21:37:03] -rw-------. 1 boincer umatlas        95 Oct 12 21:36 pilot_heartbeat.json
[2025-10-12 21:37:03] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 21:36 boinc_mmap_file
[2025-10-12 21:37:03] -rw-r--r--. 1 boincer umatlas        28 Oct 12 21:36 wrapper_checkpoint.txt
[2025-10-12 21:37:03] -rw-------. 1 boincer umatlas      5009 Oct 12 21:37 pilotlog.txt
[2025-10-12 21:37:03] -rw-------. 1 boincer umatlas   5565077 Oct 12 21:37 log.46676269._066249.job.log.1
[2025-10-12 21:37:03] -rw-------. 1 boincer umatlas       357 Oct 12 21:37 output.list
[2025-10-12 21:37:03] -rw-r--r--. 1 boincer umatlas       620 Oct 12 21:37 runtime_log
[2025-10-12 21:37:03] -rw-------. 1 boincer umatlas   6533120 Oct 12 21:37 result.tar.gz
[2025-10-12 21:37:03] -rw-r--r--. 1 boincer umatlas      8694 Oct 12 21:37 runtime_log.err
[2025-10-12 21:37:03] -rw-------. 1 boincer umatlas       653 Oct 12 21:37 BrdNDmAdxR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmaphNDm7ihl9m.diag
[2025-10-12 21:37:03] -rw-r--r--. 1 boincer umatlas     21097 Oct 12 21:37 stderr.txt
[2025-10-12 21:37:03] HITS file was successfully produced:
[2025-10-12 21:37:03] -rw-------. 1 boincer umatlas 193343415 Oct 12 21:34 shared/HITS.pool.root.1
[2025-10-12 21:37:03]  *** Contents of shared directory: ***
[2025-10-12 21:37:03] total 413028
[2025-10-12 21:37:03] -rw-r--r--. 2 boincer umatlas 222468850 Oct 12 00:02 ATLAS.root_0
[2025-10-12 21:37:03] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 00:02 start_atlas.sh
[2025-10-12 21:37:03] -rw-r--r--. 2 boincer umatlas    569682 Oct 12 00:02 input.tar.gz
[2025-10-12 21:37:03] -rw-------. 1 boincer umatlas 193343415 Oct 12 21:34 HITS.pool.root.1
[2025-10-12 21:37:03] -rw-------. 1 boincer umatlas   6533120 Oct 12 21:37 result.tar.gz
21:37:04 (864846): run_atlas exited; CPU time 52915.382157
21:37:04 (864846): called boinc_finish(0)

</stderr_txt>
]]>

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