Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:40 (322143): wrapper (7.7.26015): starting
00:01:40 (322143): wrapper: running run_atlas (--nthreads 9)
[2025-10-12 00:01:41] Arguments: --nthreads 9
[2025-10-12 00:01:41] Threads: 9
[2025-10-12 00:01:41] Checking for CVMFS
[2025-10-12 00:01:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 00:01:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 00:01:42] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 00:01:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 00:01:43] 2.13.2.0 490696 128755 271556 151606 3 359 27077275 32935937 29583 16776704 0 93233758 99.656 83827154 29521 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 00:01:43] CVMFS is ok
[2025-10-12 00:01:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 00:01:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 00:01:44] Further information can be found at the LHC@home message board.
[2025-10-12 00:01:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 00:01:44] Checking for apptainer binary...
[2025-10-12 00:01:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 00:01:44] Running /usr/bin/apptainer --version
[2025-10-12 00:01:44] apptainer version 1.4.3-1.el9
[2025-10-12 00:01:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 00:01:45] c-8-17.aglt2.org
[2025-10-12 00:01:45] apptainer works
[2025-10-12 00:01:45] Set ATHENA_PROC_NUMBER=9
[2025-10-12 00:01:45] Set ATHENA_CORE_NUMBER=9
[2025-10-12 00:01:45] Starting ATLAS job with PandaID=6839241495
[2025-10-12 00:01:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 14:26:01]  *** The last 200 lines of the pilot log: ***
[2025-10-12 14:26:01] 2025-10-12 18:25:25,766 | INFO     | mean y: 2197925.776190476
[2025-10-12 14:26:01] 2025-10-12 18:25:25,767 | INFO     | -- intersect: -7262963033.632612
[2025-10-12 14:26:01] 2025-10-12 18:25:25,767 | INFO     | intersect: -7262963033.632612
[2025-10-12 14:26:01] 2025-10-12 18:25:25,800 | INFO     | monitor loop #2674: job 0:6839241495 is in state 'finished'
[2025-10-12 14:26:01] 2025-10-12 18:25:25,800 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 14:26:01] 2025-10-12 18:25:25,809 | INFO     | chi2: 5.201174852838557
[2025-10-12 14:26:01] 2025-10-12 18:25:25,809 | INFO     | current chi2=5.201174852838557 (change=12.628297607195432 %)
[2025-10-12 14:26:01] 2025-10-12 18:25:25,809 | INFO     | right removable region: 839
[2025-10-12 14:26:01] 2025-10-12 18:25:25,811 | INFO     | sum of square deviations: 183767574339.12347
[2025-10-12 14:26:01] 2025-10-12 18:25:25,986 | INFO     | sum of deviations: 481481080036.5621
[2025-10-12 14:26:01] 2025-10-12 18:25:25,987 | INFO     | mean x: 1760267843.0761905
[2025-10-12 14:26:01] 2025-10-12 18:25:25,987 | INFO     | mean y: 2204883.288095238
[2025-10-12 14:26:01] 2025-10-12 18:25:25,987 | INFO     | -- intersect: -4609792991.1242695
[2025-10-12 14:26:01] 2025-10-12 18:25:25,987 | INFO     | intersect: -4609792991.1242695
[2025-10-12 14:26:01] 2025-10-12 18:25:25,992 | INFO     | chi2: 2.9307490396859195
[2025-10-12 14:26:01] 2025-10-12 18:25:25,993 | INFO     | current chi2=2.9307490396859195 (change=50.76794375722863 %)
[2025-10-12 14:26:01] 2025-10-12 18:25:25,994 | INFO     | sum of square deviations: 180504746546.62772
[2025-10-12 14:26:01] 2025-10-12 18:25:26,013 | INFO     | sum of deviations: 365076485947.6671
[2025-10-12 14:26:01] 2025-10-12 18:25:26,013 | INFO     | mean x: 1760267995.5856287
[2025-10-12 14:26:01] 2025-10-12 18:25:26,013 | INFO     | mean y: 2210324.7389221555
[2025-10-12 14:26:01] 2025-10-12 18:25:26,014 | INFO     | -- intersect: -3557986658.7156987
[2025-10-12 14:26:01] 2025-10-12 18:25:26,014 | INFO     | intersect: -3557986658.7156987
[2025-10-12 14:26:01] 2025-10-12 18:25:26,015 | INFO     | chi2: 2.1247620340796933
[2025-10-12 14:26:01] 2025-10-12 18:25:26,015 | INFO     | current chi2=2.1247620340796933 (change=27.501058421999915 %)
[2025-10-12 14:26:01] 2025-10-12 18:25:26,016 | INFO     | sum of square deviations: 177280807628.6704
[2025-10-12 14:26:01] 2025-10-12 18:25:26,037 | INFO     | sum of deviations: 270374437827.61636
[2025-10-12 14:26:01] 2025-10-12 18:25:26,037 | INFO     | mean x: 1760268148.093976
[2025-10-12 14:26:01] 2025-10-12 18:25:26,038 | INFO     | mean y: 2214802.043373494
[2025-10-12 14:26:01] 2025-10-12 18:25:26,038 | INFO     | -- intersect: -2682404685.7223115
[2025-10-12 14:26:01] 2025-10-12 18:25:26,038 | INFO     | intersect: -2682404685.7223115
[2025-10-12 14:26:01] 2025-10-12 18:25:26,039 | INFO     | chi2: 1.578124962510011
[2025-10-12 14:26:01] 2025-10-12 18:25:26,039 | INFO     | current chi2=1.578124962510011 (change=25.726978494627012 %)
[2025-10-12 14:26:01] 2025-10-12 18:25:26,040 | INFO     | sum of square deviations: 174095473841.59497
[2025-10-12 14:26:01] 2025-10-12 18:25:26,062 | INFO     | sum of deviations: 210845283917.54178
[2025-10-12 14:26:01] 2025-10-12 18:25:26,062 | INFO     | mean x: 1760268300.6024241
[2025-10-12 14:26:01] 2025-10-12 18:25:26,062 | INFO     | mean y: 2217652.0290909093
[2025-10-12 14:26:01] 2025-10-12 18:25:26,062 | INFO     | -- intersect: -2129625648.7867682
[2025-10-12 14:26:01] 2025-10-12 18:25:26,062 | INFO     | intersect: -2129625648.7867682
[2025-10-12 14:26:01] 2025-10-12 18:25:26,063 | INFO     | chi2: 1.3764404480620014
[2025-10-12 14:26:01] 2025-10-12 18:25:26,064 | INFO     | current chi2=1.3764404480620014 (change=12.78000913991184 %)
[2025-10-12 14:26:01] 2025-10-12 18:25:26,064 | INFO     | left removable region: 40
[2025-10-12 14:26:01] 2025-10-12 18:25:26,065 | INFO     | sum of square deviations: 158147710852.81348
[2025-10-12 14:26:01] 2025-10-12 18:25:26,088 | INFO     | sum of deviations: 211581465023.50458
[2025-10-12 14:26:01] 2025-10-12 18:25:26,088 | INFO     | mean x: 1760268727.6057572
[2025-10-12 14:26:01] 2025-10-12 18:25:26,089 | INFO     | mean y: 2224117.455569462
[2025-10-12 14:26:01] 2025-10-12 18:25:26,089 | INFO     | -- intersect: -2352790913.8306746
[2025-10-12 14:26:01] 2025-10-12 18:25:26,089 | INFO     | intersect: -2352790913.8306746
[2025-10-12 14:26:01] 2025-10-12 18:25:26,090 | INFO     | chi2: 0.5014371703717757
[2025-10-12 14:26:01] 2025-10-12 18:25:26,090 | INFO     | -- intersect: -2352790913.8306746
[2025-10-12 14:26:01] 2025-10-12 18:25:26,090 | INFO     | current memory leak: 1.34 B/s (using 799 data points, chi2=0.50)
[2025-10-12 14:26:01] 2025-10-12 18:25:26,091 | INFO     | could have reported an average CPU frequency of 2600 MHz (31 samples)
[2025-10-12 14:26:01] 2025-10-12 18:25:26,091 | INFO     | ..............................
[2025-10-12 14:26:01] 2025-10-12 18:25:26,092 | INFO     | . Timing measurements:
[2025-10-12 14:26:01] 2025-10-12 18:25:26,092 | INFO     | . get job = 0 s
[2025-10-12 14:26:01] 2025-10-12 18:25:26,092 | INFO     | . initial setup = 8 s
[2025-10-12 14:26:01] 2025-10-12 18:25:26,092 | INFO     | . payload setup = 50 s
[2025-10-12 14:26:01] 2025-10-12 18:25:26,092 | INFO     | . stage-in = 0 s
[2025-10-12 14:26:01] 2025-10-12 18:25:26,101 | INFO     | . payload execution = 51573 s
[2025-10-12 14:26:01] 2025-10-12 18:25:26,101 | INFO     | . stage-out = 6 s
[2025-10-12 14:26:01] 2025-10-12 18:25:26,102 | INFO     | . log creation = 1 s
[2025-10-12 14:26:01] 2025-10-12 18:25:26,102 | INFO     | ..............................
[2025-10-12 14:26:01] 2025-10-12 18:25:26,414 | INFO     | 
[2025-10-12 14:26:01] 2025-10-12 18:25:26,415 | INFO     | job summary report
[2025-10-12 14:26:01] 2025-10-12 18:25:26,415 | INFO     | --------------------------------------------------
[2025-10-12 14:26:01] 2025-10-12 18:25:26,415 | INFO     | PanDA job id: 6839241495
[2025-10-12 14:26:01] 2025-10-12 18:25:26,415 | INFO     | task id: 46676269
[2025-10-12 14:26:01] 2025-10-12 18:25:26,415 | INFO     | errors: (none)
[2025-10-12 14:26:01] 2025-10-12 18:25:26,415 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 14:26:01] 2025-10-12 18:25:26,415 | INFO     | pilot state: finished 
[2025-10-12 14:26:01] 2025-10-12 18:25:26,415 | INFO     | transexitcode: 0
[2025-10-12 14:26:01] 2025-10-12 18:25:26,416 | INFO     | exeerrorcode: 0
[2025-10-12 14:26:01] 2025-10-12 18:25:26,416 | INFO     | exeerrordiag: 
[2025-10-12 14:26:01] 2025-10-12 18:25:26,416 | INFO     | exitcode: 0
[2025-10-12 14:26:01] 2025-10-12 18:25:26,416 | INFO     | exitmsg: OK
[2025-10-12 14:26:01] 2025-10-12 18:25:26,416 | INFO     | cpuconsumptiontime: 47676 s
[2025-10-12 14:26:01] 2025-10-12 18:25:26,416 | INFO     | nevents: 400
[2025-10-12 14:26:01] 2025-10-12 18:25:26,416 | INFO     | neventsw: 0
[2025-10-12 14:26:01] 2025-10-12 18:25:26,416 | INFO     | pid: 358247
[2025-10-12 14:26:01] 2025-10-12 18:25:26,416 | INFO     | pgrp: 358247
[2025-10-12 14:26:01] 2025-10-12 18:25:26,416 | INFO     | corecount: 9
[2025-10-12 14:26:01] 2025-10-12 18:25:26,416 | INFO     | event service: False
[2025-10-12 14:26:01] 2025-10-12 18:25:26,417 | INFO     | sizes: {0: 2347979, 1: 2348580, 2: 2348664, 3: 2348720, 4: 2348919, 15: 2348919, 26: 2349075, 33: 2349365, 37: 2349421, 51629: 2396886, 51637: 2405884, 51639: 2406
[2025-10-12 14:26:01] 2025-10-12 18:25:26,417 | INFO     | --------------------------------------------------
[2025-10-12 14:26:01] 2025-10-12 18:25:26,417 | INFO     | 
[2025-10-12 14:26:01] 2025-10-12 18:25:26,417 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 14:26:01] 2025-10-12 18:25:26,691 | INFO     | PID=332538 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 14:26:01] 2025-10-12 18:25:26,692 | INFO     | .. there are 42 such processes running
[2025-10-12 14:26:01] 2025-10-12 18:25:26,739 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 14:26:01] 2025-10-12 18:25:26,739 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 14:26:01] 2025-10-12 18:25:26,739 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 14:26:01] 2025-10-12 18:25:26,739 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 14:26:01] 2025-10-12 18:25:26,739 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 14:26:01] 2025-10-12 18:25:26,739 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 14:26:01] 2025-10-12 18:25:26,739 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 14:26:01] 2025-10-12 18:25:26,739 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 14:26:01] 2025-10-12 18:25:26,739 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 14:26:01] 2025-10-12 18:25:26,740 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 14:26:01] 2025-10-12 18:25:26,740 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 14:26:01] 2025-10-12 18:25:26,740 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 14:26:01] 2025-10-12 18:25:26,740 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 14:26:01] 2025-10-12 18:25:26,740 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 14:26:01] 2025-10-12 18:25:26,740 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 14:26:01] 2025-10-12 18:25:26,740 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 14:26:01] 2025-10-12 18:25:26,740 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 14:26:01] 2025-10-12 18:25:26,740 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 14:26:01] 2025-10-12 18:25:26,741 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 14:26:01] 2025-10-12 18:25:26,741 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 14:26:01] 2025-10-12 18:25:26,741 | INFO     | job 6839241495 has completed (purged errors)
[2025-10-12 14:26:01] 2025-10-12 18:25:26,741 | INFO     | overall cleanup function is called
[2025-10-12 14:26:01] 2025-10-12 18:25:27,757 | INFO     | --- collectZombieJob: --- 10, [358247]
[2025-10-12 14:26:01] 2025-10-12 18:25:27,758 | INFO     | zombie collector waiting for pid 358247
[2025-10-12 14:26:01] 2025-10-12 18:25:27,758 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 14:26:01] 2025-10-12 18:25:27,758 | INFO     | collected zombie processes
[2025-10-12 14:26:01] 2025-10-12 18:25:27,758 | INFO     | will attempt to kill all subprocesses of pid=358247
[2025-10-12 14:26:01] 2025-10-12 18:25:28,783 | INFO     | process IDs to be killed: [358247] (in reverse order)
[2025-10-12 14:26:01] 2025-10-12 18:25:29,198 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 14:26:01] 2025-10-12 18:25:29,198 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 14:26:01] 2025-10-12 18:25:29,379 | INFO     | did not find any defunct processes belonging to 358247
[2025-10-12 14:26:01] 2025-10-12 18:25:29,570 | INFO     | did not find any defunct processes belonging to 358247
[2025-10-12 14:26:01] 2025-10-12 18:25:29,571 | INFO     | ready for new job
[2025-10-12 14:26:01] 2025-10-12 18:25:29,571 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 14:26:01] 2025-10-12 18:25:29,603 | INFO     | ***************************************
[2025-10-12 14:26:01] 2025-10-12 18:25:29,603 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 14:26:01] 2025-10-12 18:25:29,603 | INFO     | ***************************************
[2025-10-12 14:26:01] 2025-10-12 18:25:29,646 | INFO     | 
[2025-10-12 14:26:01] 2025-10-12 18:25:29,707 | INFO     | architecture information:
[2025-10-12 14:26:01] 2025-10-12 18:25:29,731 | INFO     | executing command: cat /etc/os-release
[2025-10-12 14:26:01] 2025-10-12 18:25:29,931 | INFO     | cat /etc/os-release:
[2025-10-12 14:26:01] NAME="CentOS Linux"
[2025-10-12 14:26:01] VERSION="7 (Core)"
[2025-10-12 14:26:01] ID="centos"
[2025-10-12 14:26:01] ID_LIKE="rhel fedora"
[2025-10-12 14:26:01] VERSION_ID="7"
[2025-10-12 14:26:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 14:26:01] ANSI_COLOR="0;31"
[2025-10-12 14:26:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 14:26:01] HOME_URL="https://www.centos.org/"
[2025-10-12 14:26:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 14:26:01] 
[2025-10-12 14:26:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 14:26:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 14:26:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 14:26:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 14:26:01] 
[2025-10-12 14:26:01] 2025-10-12 18:25:29,932 | INFO     | ***************************************
[2025-10-12 14:26:01] 2025-10-12 18:25:30,436 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 14:26:01] 2025-10-12 18:25:30,710 | INFO     | sufficient remaining disk space (74996252672 B)
[2025-10-12 14:26:01] 2025-10-12 18:25:30,710 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 14:26:01] 2025-10-12 18:25:30,710 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 14:26:01] 2025-10-12 18:25:30,711 | INFO     | update_server=False
[2025-10-12 14:26:01] 2025-10-12 18:25:30,711 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 14:26:01] 2025-10-12 18:25:30,815 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 14:26:01] 2025-10-12 18:25:30,841 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 14:26:01] 2025-10-12 18:25:30,842 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 14:26:01] 2025-10-12 18:25:30,842 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:26:01] 2025-10-12 18:25:30,842 | INFO     | will abort loop
[2025-10-12 14:26:01] 2025-10-12 18:25:30,894 | INFO     | all payload control threads have been joined
[2025-10-12 14:26:01] 2025-10-12 18:25:31,281 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:26:01] 2025-10-12 18:25:31,639 | INFO     | all data control threads have been joined
[2025-10-12 14:26:01] 2025-10-12 18:25:31,716 | INFO     | [job] retrieve thread has finished
[2025-10-12 14:26:01] 2025-10-12 18:25:31,852 | INFO     | [job] job monitor thread has finished
[2025-10-12 14:26:01] 2025-10-12 18:25:31,912 | INFO     | [payload] control thread has finished
[2025-10-12 14:26:01] 2025-10-12 18:25:31,975 | INFO     | all job control threads have been joined
[2025-10-12 14:26:01] 2025-10-12 18:25:32,012 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 14:26:01] 2025-10-12 18:25:32,287 | INFO     | [job] queue monitor thread has finished
[2025-10-12 14:26:01] 2025-10-12 18:25:32,336 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 14:26:01] 2025-10-12 18:25:32,620 | INFO     | [payload] failed_post thread has finished
[2025-10-12 14:26:01] 2025-10-12 18:25:32,645 | INFO     | [data] control thread has finished
[2025-10-12 14:26:01] 2025-10-12 18:25:32,846 | INFO     | [data] copytool_out thread has finished
[2025-10-12 14:26:01] 2025-10-12 18:25:32,938 | INFO     | [data] copytool_in thread has finished
[2025-10-12 14:26:01] 2025-10-12 18:25:32,981 | INFO     | [job] control thread has finished
[2025-10-12 14:26:01] 2025-10-12 18:25:33,026 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 14:26:01] 2025-10-12 18:25:33,079 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 14:26:01] 2025-10-12 18:25:33,091 | INFO     | [job] validate thread has finished
[2025-10-12 14:26:01] 2025-10-12 18:25:33,122 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 14:26:01] 2025-10-12 18:25:33,149 | INFO     | [payload] validate_post thread has finished
[2025-10-12 14:26:01] 2025-10-12 18:25:36,349 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 14:26:01] 2025-10-12 18:25:41,529 | INFO     | [monitor] cgroup control has ended
[2025-10-12 14:26:01] 2025-10-12 18:25:43,353 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139861210777408)>', '<ExcThread(monitor, started 139860417431296)>']
[2025-10-12 14:26:01] 2025-10-12 18:25:48,379 | INFO     | all workflow threads have been joined
[2025-10-12 14:26:01] 2025-10-12 18:25:48,379 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 14:26:01] 2025-10-12 18:25:48,380 | INFO     | traces error code: 0
[2025-10-12 14:26:01] 2025-10-12 18:25:48,380 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 14:26:01] 2025-10-12 18:25:59,840 | INFO     | PID=332538 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 14:26:01] 2025-10-12 18:25:59,840 | INFO     | .. there are 42 such processes running
[2025-10-12 14:26:01] 2025-10-12 18:25:59,841 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 14:26:01] 2025-10-12 18:25:59,841 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 14:26:01] 2025-10-12 18:25:59,842 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 14:26:01] 2025-10-12 18:25:59,842 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 14:26:01] 2025-10-12 18:25:59,842 | INFO     | [monitor] control thread has ended
[2025-10-12 14:26:01] 2025-10-12 18:26:00,327 [wrapper] ==== pilot stdout END ====
[2025-10-12 14:26:01] 2025-10-12 18:26:00,336 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 14:26:01] 2025-10-12 18:26:00,346 [wrapper] pilotpid: 332538
[2025-10-12 14:26:01] 2025-10-12 18:26:00,360 [wrapper] Pilot exit status: 0
[2025-10-12 14:26:01] 2025-10-12 18:26:00,442 [wrapper] pandaids: 6839241495
[2025-10-12 14:26:01] 2025-10-12 18:26:00,709 [wrapper] cleanup supervisor_pilot 3185565 332539
[2025-10-12 14:26:01] 2025-10-12 18:26:00,713 [wrapper] Test setup, not cleaning
[2025-10-12 14:26:01] 2025-10-12 18:26:00,716 [wrapper] apfmon messages muted
[2025-10-12 14:26:01] 2025-10-12 18:26:00,719 [wrapper] ==== wrapper stdout END ====
[2025-10-12 14:26:01] 2025-10-12 18:26:00,722 [wrapper] ==== wrapper stderr END ====
[2025-10-12 14:26:01]  *** Error codes and diagnostics ***
[2025-10-12 14:26:01]     "exeErrorCode": 0,
[2025-10-12 14:26:01]     "exeErrorDiag": "",
[2025-10-12 14:26:01]     "pilotErrorCode": 0,
[2025-10-12 14:26:01]     "pilotErrorDiag": "",
[2025-10-12 14:26:01]  *** Listing of results directory ***
[2025-10-12 14:26:01] total 414840
[2025-10-12 14:26:01] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 21:26 pilot3.tar.gz
[2025-10-12 14:26:01] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 21:36 queuedata.json
[2025-10-12 14:26:01] -rwx------. 1 boincer umatlas     36292 Oct 11 21:37 runpilot2-wrapper.sh
[2025-10-12 14:26:01] -rw-r--r--. 1 boincer umatlas       100 Oct 12 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 14:26:01] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 00:01 run_atlas
[2025-10-12 14:26:01] -rw-r--r--. 1 boincer umatlas       105 Oct 12 00:01 job.xml
[2025-10-12 14:26:01] -rw-r--r--. 2 boincer umatlas 219285544 Oct 12 00:01 EVNT.46676267._001418.pool.root.1
[2025-10-12 14:26:01] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 00:01 start_atlas.sh
[2025-10-12 14:26:01] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 00:01 shared
[2025-10-12 14:26:01] -rw-r--r--. 2 boincer umatlas    569689 Oct 12 00:01 input.tar.gz
[2025-10-12 14:26:01] -rw-r--r--. 1 boincer umatlas         0 Oct 12 00:01 boinc_lockfile
[2025-10-12 14:26:01] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 00:01 pandaJob.out
[2025-10-12 14:26:01] -rw-------. 1 boincer umatlas    975512 Oct 12 00:02 agis_schedconf.cvmfs.json
[2025-10-12 14:26:01] drwx------. 5 boincer umatlas      4096 Oct 12 00:03 pilot3
[2025-10-12 14:26:01] -rw-r--r--. 1 boincer umatlas      6659 Oct 12 14:18 init_data.xml
[2025-10-12 14:26:01] -rw-------. 1 boincer umatlas 188027325 Oct 12 14:23 HITS.46676269._068724.pool.root.1
[2025-10-12 14:26:01] -rw-r--r--. 1 boincer umatlas       531 Oct 12 14:23 boinc_task_state.xml
[2025-10-12 14:26:01] -rw-------. 1 boincer umatlas      1042 Oct 12 14:24 memory_monitor_summary.json
[2025-10-12 14:26:01] -rw-------. 1 boincer umatlas   1560580 Oct 12 14:24 agis_ddmendpoints.agis.ALL.json
[2025-10-12 14:26:01] -rw-------. 1 boincer umatlas    906901 Oct 12 14:24 log.46676269._068724.job.log.tgz.1
[2025-10-12 14:26:01] -rw-------. 1 boincer umatlas      7819 Oct 12 14:25 heartbeat.json
[2025-10-12 14:26:01] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 14:25 boinc_mmap_file
[2025-10-12 14:26:01] -rw-r--r--. 1 boincer umatlas        28 Oct 12 14:25 wrapper_checkpoint.txt
[2025-10-12 14:26:01] -rw-------. 1 boincer umatlas        95 Oct 12 14:25 pilot_heartbeat.json
[2025-10-12 14:26:01] -rw-------. 1 boincer umatlas       822 Oct 12 14:25 pilotlog.txt
[2025-10-12 14:26:01] -rw-------. 1 boincer umatlas   5879871 Oct 12 14:26 log.46676269._068724.job.log.1
[2025-10-12 14:26:01] -rw-------. 1 boincer umatlas       357 Oct 12 14:26 output.list
[2025-10-12 14:26:01] -rw-r--r--. 1 boincer umatlas       620 Oct 12 14:26 runtime_log
[2025-10-12 14:26:01] -rw-------. 1 boincer umatlas   6809600 Oct 12 14:26 result.tar.gz
[2025-10-12 14:26:01] -rw-r--r--. 1 boincer umatlas      8694 Oct 12 14:26 runtime_log.err
[2025-10-12 14:26:01] -rw-------. 1 boincer umatlas       655 Oct 12 14:26 DLpKDmzC0R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm5EiNDmXa7pjn.diag
[2025-10-12 14:26:01] -rw-r--r--. 1 boincer umatlas     21283 Oct 12 14:26 stderr.txt
[2025-10-12 14:26:01] HITS file was successfully produced:
[2025-10-12 14:26:01] -rw-------. 1 boincer umatlas 188027325 Oct 12 14:23 shared/HITS.pool.root.1
[2025-10-12 14:26:01]  *** Contents of shared directory: ***
[2025-10-12 14:26:01] total 405008
[2025-10-12 14:26:01] -rw-r--r--. 2 boincer umatlas 219285544 Oct 12 00:01 ATLAS.root_0
[2025-10-12 14:26:01] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 00:01 start_atlas.sh
[2025-10-12 14:26:01] -rw-r--r--. 2 boincer umatlas    569689 Oct 12 00:01 input.tar.gz
[2025-10-12 14:26:01] -rw-------. 1 boincer umatlas 188027325 Oct 12 14:23 HITS.pool.root.1
[2025-10-12 14:26:01] -rw-------. 1 boincer umatlas   6809600 Oct 12 14:26 result.tar.gz
14:26:03 (322143): run_atlas exited; CPU time 49928.037210
14:26:03 (322143): called boinc_finish(0)

</stderr_txt>
]]>

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