Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:34 (807189): wrapper (7.7.26015): starting
00:01:34 (807189): wrapper: running run_atlas (--nthreads 9)
[2025-10-12 00:01:34] Arguments: --nthreads 9
[2025-10-12 00:01:34] Threads: 9
[2025-10-12 00:01:34] Checking for CVMFS
[2025-10-12 00:01:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 00:01:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 00:01:36] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 00:01:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 00:01:37] 2.13.2.0 360960 8007 195260 151606 1 251 28974810 32935937 25932 16776704 0 22923780 99.650 22301864 29332 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 00:01:37] CVMFS is ok
[2025-10-12 00:01:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 00:01:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 00:01:37] Further information can be found at the LHC@home message board.
[2025-10-12 00:01:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 00:01:37] Checking for apptainer binary...
[2025-10-12 00:01:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 00:01:37] Running /usr/bin/apptainer --version
[2025-10-12 00:01:37] apptainer version 1.4.3-1.el9
[2025-10-12 00:01:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 00:01:39] c-5-1.aglt2.org
[2025-10-12 00:01:39] apptainer works
[2025-10-12 00:01:39] Set ATHENA_PROC_NUMBER=9
[2025-10-12 00:01:39] Set ATHENA_CORE_NUMBER=9
[2025-10-12 00:01:39] Starting ATLAS job with PandaID=6839241487
[2025-10-12 00:01:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:01:41]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:01:41] 2025-10-12 17:00:47,848 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 13:01:41] 2025-10-12 17:00:47,849 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 13:01:41] 2025-10-12 17:00:47,849 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 13:01:41] 2025-10-12 17:00:47,866 | INFO     | fitting pss+swap vs Time
[2025-10-12 13:01:41] 2025-10-12 17:00:47,867 | INFO     | sum of square deviations: 136117643009.07365
[2025-10-12 13:01:41] 2025-10-12 17:00:47,884 | INFO     | sum of deviations: 324870935551.3102
[2025-10-12 13:01:41] 2025-10-12 17:00:47,884 | INFO     | mean x: 1760265259.2263157
[2025-10-12 13:01:41] 2025-10-12 17:00:47,884 | INFO     | mean y: 2243013.864473684
[2025-10-12 13:01:41] 2025-10-12 17:00:47,884 | INFO     | -- intersect: -4198968592.0785
[2025-10-12 13:01:41] 2025-10-12 17:00:47,884 | INFO     | intersect: -4198968592.0785
[2025-10-12 13:01:41] 2025-10-12 17:00:47,886 | INFO     | chi2: 7.0019178542317695
[2025-10-12 13:01:41] 2025-10-12 17:00:47,887 | INFO     | sum of square deviations: 133449072336.54846
[2025-10-12 13:01:41] 2025-10-12 17:00:47,903 | INFO     | sum of deviations: 427757562482.4963
[2025-10-12 13:01:41] 2025-10-12 17:00:47,904 | INFO     | mean x: 1760265106.7364237
[2025-10-12 13:01:41] 2025-10-12 17:00:47,905 | INFO     | mean y: 2248872.072847682
[2025-10-12 13:01:41] 2025-10-12 17:00:47,905 | INFO     | -- intersect: -5640103661.3463335
[2025-10-12 13:01:41] 2025-10-12 17:00:47,905 | INFO     | intersect: -5640103661.3463335
[2025-10-12 13:01:41] 2025-10-12 17:00:47,906 | INFO     | chi2: 5.303636813508041
[2025-10-12 13:01:41] 2025-10-12 17:00:47,906 | INFO     | current chi2=5.303636813508041 (change=24.254512493278295 %)
[2025-10-12 13:01:41] 2025-10-12 17:00:47,907 | INFO     | right removable region: 754
[2025-10-12 13:01:41] 2025-10-12 17:00:47,908 | INFO     | sum of square deviations: 133448364492.54848
[2025-10-12 13:01:41] 2025-10-12 17:00:47,924 | INFO     | sum of deviations: 101731131793.63295
[2025-10-12 13:01:41] 2025-10-12 17:00:47,924 | INFO     | mean x: 1760265411.7364237
[2025-10-12 13:01:41] 2025-10-12 17:00:47,924 | INFO     | mean y: 2255756.671523179
[2025-10-12 13:01:41] 2025-10-12 17:00:47,925 | INFO     | -- intersect: -1339639989.1030972
[2025-10-12 13:01:41] 2025-10-12 17:00:47,925 | INFO     | intersect: -1339639989.1030972
[2025-10-12 13:01:41] 2025-10-12 17:00:47,926 | INFO     | chi2: 3.1701877023746774
[2025-10-12 13:01:41] 2025-10-12 17:00:47,926 | INFO     | current chi2=3.1701877023746774 (change=54.724008930514636 %)
[2025-10-12 13:01:41] 2025-10-12 17:00:47,927 | INFO     | sum of square deviations: 130814249214.85858
[2025-10-12 13:01:41] 2025-10-12 17:00:47,942 | INFO     | sum of deviations: -11085789654.186684
[2025-10-12 13:01:41] 2025-10-12 17:00:47,943 | INFO     | mean x: 1760265564.2453334
[2025-10-12 13:01:41] 2025-10-12 17:00:47,943 | INFO     | mean y: 2262284.446666667
[2025-10-12 13:01:41] 2025-10-12 17:00:47,943 | INFO     | -- intersect: 151435129.89625478
[2025-10-12 13:01:41] 2025-10-12 17:00:47,943 | INFO     | intersect: 151435129.89625478
[2025-10-12 13:01:41] 2025-10-12 17:00:47,944 | INFO     | chi2: 2.2022467173575286
[2025-10-12 13:01:41] 2025-10-12 17:00:47,945 | INFO     | current chi2=2.2022467173575286 (change=30.532608031130078 %)
[2025-10-12 13:01:41] 2025-10-12 17:00:47,946 | INFO     | sum of square deviations: 128214972315.53835
[2025-10-12 13:01:41] 2025-10-12 17:00:47,961 | INFO     | sum of deviations: -62808515493.76645
[2025-10-12 13:01:41] 2025-10-12 17:00:47,961 | INFO     | mean x: 1760265716.7557046
[2025-10-12 13:01:41] 2025-10-12 17:00:47,961 | INFO     | mean y: 2265315.2979865773
[2025-10-12 13:01:41] 2025-10-12 17:00:47,961 | INFO     | -- intersect: 864564581.5015318
[2025-10-12 13:01:41] 2025-10-12 17:00:47,961 | INFO     | intersect: 864564581.5015318
[2025-10-12 13:01:41] 2025-10-12 17:00:47,963 | INFO     | chi2: 1.9687175937833323
[2025-10-12 13:01:41] 2025-10-12 17:00:47,963 | INFO     | current chi2=1.9687175937833323 (change=10.604130851170364 %)
[2025-10-12 13:01:41] 2025-10-12 17:00:47,963 | INFO     | left removable region: 30
[2025-10-12 13:01:41] 2025-10-12 17:00:47,964 | INFO     | sum of square deviations: 117675635975.08261
[2025-10-12 13:01:41] 2025-10-12 17:00:47,978 | INFO     | sum of deviations: -3520489768.441985
[2025-10-12 13:01:41] 2025-10-12 17:00:47,978 | INFO     | mean x: 1760265991.2651935
[2025-10-12 13:01:41] 2025-10-12 17:00:47,978 | INFO     | mean y: 2274390.835635359
[2025-10-12 13:01:41] 2025-10-12 17:00:47,979 | INFO     | -- intersect: 54936085.5070599
[2025-10-12 13:01:41] 2025-10-12 17:00:47,979 | INFO     | intersect: 54936085.5070599
[2025-10-12 13:01:41] 2025-10-12 17:00:47,980 | INFO     | chi2: 0.14701311633228872
[2025-10-12 13:01:41] 2025-10-12 17:00:47,980 | INFO     | -- intersect: 54936085.5070599
[2025-10-12 13:01:41] 2025-10-12 17:00:47,980 | INFO     | current memory leak: -0.03 B/s (using 724 data points, chi2=0.15)
[2025-10-12 13:01:41] 2025-10-12 17:00:47,983 | INFO     | could have reported an average CPU frequency of 2600 MHz (28 samples)
[2025-10-12 13:01:41] 2025-10-12 17:00:47,984 | INFO     | ..............................
[2025-10-12 13:01:41] 2025-10-12 17:00:47,984 | INFO     | . Timing measurements:
[2025-10-12 13:01:41] 2025-10-12 17:00:47,984 | INFO     | . get job = 2 s
[2025-10-12 13:01:41] 2025-10-12 17:00:47,984 | INFO     | . initial setup = 20 s
[2025-10-12 13:01:41] 2025-10-12 17:00:47,984 | INFO     | . payload setup = 83 s
[2025-10-12 13:01:41] 2025-10-12 17:00:47,984 | INFO     | . stage-in = 1 s
[2025-10-12 13:01:41] 2025-10-12 17:00:47,984 | INFO     | . payload execution = 46358 s
[2025-10-12 13:01:41] 2025-10-12 17:00:47,984 | INFO     | . stage-out = 8 s
[2025-10-12 13:01:41] 2025-10-12 17:00:47,985 | INFO     | . log creation = 1 s
[2025-10-12 13:01:41] 2025-10-12 17:00:47,985 | INFO     | ..............................
[2025-10-12 13:01:41] 2025-10-12 17:00:48,100 | INFO     | 
[2025-10-12 13:01:41] 2025-10-12 17:00:48,101 | INFO     | job summary report
[2025-10-12 13:01:41] 2025-10-12 17:00:48,101 | INFO     | --------------------------------------------------
[2025-10-12 13:01:41] 2025-10-12 17:00:48,101 | INFO     | PanDA job id: 6839241487
[2025-10-12 13:01:41] 2025-10-12 17:00:48,101 | INFO     | task id: 46676269
[2025-10-12 13:01:41] 2025-10-12 17:00:48,101 | INFO     | errors: (none)
[2025-10-12 13:01:41] 2025-10-12 17:00:48,101 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 13:01:41] 2025-10-12 17:00:48,101 | INFO     | pilot state: finished 
[2025-10-12 13:01:41] 2025-10-12 17:00:48,101 | INFO     | transexitcode: 0
[2025-10-12 13:01:41] 2025-10-12 17:00:48,101 | INFO     | exeerrorcode: 0
[2025-10-12 13:01:41] 2025-10-12 17:00:48,102 | INFO     | exeerrordiag: 
[2025-10-12 13:01:41] 2025-10-12 17:00:48,102 | INFO     | exitcode: 0
[2025-10-12 13:01:41] 2025-10-12 17:00:48,102 | INFO     | exitmsg: OK
[2025-10-12 13:01:41] 2025-10-12 17:00:48,102 | INFO     | cpuconsumptiontime: 49321 s
[2025-10-12 13:01:41] 2025-10-12 17:00:48,102 | INFO     | nevents: 400
[2025-10-12 13:01:41] 2025-10-12 17:00:48,102 | INFO     | neventsw: 0
[2025-10-12 13:01:41] 2025-10-12 17:00:48,102 | INFO     | pid: 834857
[2025-10-12 13:01:41] 2025-10-12 17:00:48,102 | INFO     | pgrp: 834857
[2025-10-12 13:01:41] 2025-10-12 17:00:48,102 | INFO     | corecount: 9
[2025-10-12 13:01:41] 2025-10-12 17:00:48,103 | INFO     | event service: False
[2025-10-12 13:01:41] 2025-10-12 17:00:48,103 | INFO     | sizes: {0: 2347928, 1: 2348529, 2: 2348641, 4: 2348812, 6: 2348840, 8: 2348868, 21: 2349024, 32: 2349052, 44: 2349080, 57: 2349310, 59: 2349398, 69: 2349706, 46447
[2025-10-12 13:01:41] 2025-10-12 17:00:48,103 | INFO     | --------------------------------------------------
[2025-10-12 13:01:41] 2025-10-12 17:00:48,103 | INFO     | 
[2025-10-12 13:01:41] 2025-10-12 17:00:48,103 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-12 13:01:41] 2025-10-12 17:00:48,143 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 13:01:41] 2025-10-12 17:00:48,143 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 13:01:41] 2025-10-12 17:00:48,143 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 13:01:41] 2025-10-12 17:00:48,144 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 13:01:41] 2025-10-12 17:00:48,144 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 13:01:41] 2025-10-12 17:00:48,144 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 13:01:41] 2025-10-12 17:00:48,144 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 13:01:41] 2025-10-12 17:00:48,144 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 13:01:41] 2025-10-12 17:00:48,144 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 13:01:41] 2025-10-12 17:00:48,144 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 13:01:41] 2025-10-12 17:00:48,144 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 13:01:41] 2025-10-12 17:00:48,144 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 13:01:41] 2025-10-12 17:00:48,145 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 13:01:41] 2025-10-12 17:00:48,145 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 13:01:41] 2025-10-12 17:00:48,145 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 13:01:41] 2025-10-12 17:00:48,145 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 13:01:41] 2025-10-12 17:00:48,145 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 13:01:41] 2025-10-12 17:00:48,145 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 13:01:41] 2025-10-12 17:00:48,145 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:01:41] 2025-10-12 17:00:48,145 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:01:41] 2025-10-12 17:00:48,146 | INFO     | job 6839241487 has completed (purged errors)
[2025-10-12 13:01:41] 2025-10-12 17:00:48,146 | INFO     | overall cleanup function is called
[2025-10-12 13:01:41] 2025-10-12 17:00:49,155 | INFO     | --- collectZombieJob: --- 10, [834857]
[2025-10-12 13:01:41] 2025-10-12 17:00:49,161 | INFO     | zombie collector waiting for pid 834857
[2025-10-12 13:01:41] 2025-10-12 17:00:49,162 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:01:41] 2025-10-12 17:00:49,162 | INFO     | collected zombie processes
[2025-10-12 13:01:41] 2025-10-12 17:00:49,162 | INFO     | will attempt to kill all subprocesses of pid=834857
[2025-10-12 13:01:41] 2025-10-12 17:00:50,037 | INFO     | process IDs to be killed: [834857] (in reverse order)
[2025-10-12 13:01:41] 2025-10-12 17:00:50,158 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:01:41] 2025-10-12 17:00:50,159 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:01:41] 2025-10-12 17:00:50,175 | INFO     | did not find any defunct processes belonging to 834857
[2025-10-12 13:01:41] 2025-10-12 17:00:50,191 | INFO     | did not find any defunct processes belonging to 834857
[2025-10-12 13:01:41] 2025-10-12 17:00:50,192 | INFO     | ready for new job
[2025-10-12 13:01:41] 2025-10-12 17:00:50,192 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:01:41] 2025-10-12 17:00:50,196 | INFO     | ***************************************
[2025-10-12 13:01:41] 2025-10-12 17:00:50,196 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 13:01:41] 2025-10-12 17:00:50,196 | INFO     | ***************************************
[2025-10-12 13:01:41] 2025-10-12 17:00:50,196 | INFO     | 
[2025-10-12 13:01:41] 2025-10-12 17:00:50,218 | INFO     | architecture information:
[2025-10-12 13:01:41] 2025-10-12 17:00:50,218 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:01:41] 2025-10-12 17:00:50,430 | INFO     | cat /etc/os-release:
[2025-10-12 13:01:41] NAME="CentOS Linux"
[2025-10-12 13:01:41] VERSION="7 (Core)"
[2025-10-12 13:01:41] ID="centos"
[2025-10-12 13:01:41] ID_LIKE="rhel fedora"
[2025-10-12 13:01:41] VERSION_ID="7"
[2025-10-12 13:01:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:01:41] ANSI_COLOR="0;31"
[2025-10-12 13:01:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:01:41] HOME_URL="https://www.centos.org/"
[2025-10-12 13:01:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:01:41] 
[2025-10-12 13:01:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:01:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:01:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:01:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:01:41] 
[2025-10-12 13:01:41] 2025-10-12 17:00:50,431 | INFO     | ***************************************
[2025-10-12 13:01:41] 2025-10-12 17:00:50,935 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-12 13:01:41] 2025-10-12 17:00:51,052 | INFO     | sufficient remaining disk space (75268882432 B)
[2025-10-12 13:01:41] 2025-10-12 17:00:51,053 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:01:41] 2025-10-12 17:00:51,053 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:01:41] 2025-10-12 17:00:51,053 | INFO     | update_server=False
[2025-10-12 13:01:41] 2025-10-12 17:00:51,053 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:01:41] 2025-10-12 17:00:51,054 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:01:41] 2025-10-12 17:00:51,054 | INFO     | aborting loop
[2025-10-12 13:01:41] 2025-10-12 17:00:51,597 | INFO     | all data control threads have been joined
[2025-10-12 13:01:41] 2025-10-12 17:00:51,690 | INFO     | all job control threads have been joined
[2025-10-12 13:01:41] 2025-10-12 17:00:52,011 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:01:41] 2025-10-12 17:00:52,059 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:01:41] 2025-10-12 17:00:52,070 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:01:41] 2025-10-12 17:00:52,332 | INFO     | all payload control threads have been joined
[2025-10-12 13:01:41] 2025-10-12 17:00:52,394 | INFO     | [job] validate thread has finished
[2025-10-12 13:01:41] 2025-10-12 17:00:52,395 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:01:41] 2025-10-12 17:00:52,406 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:01:41] 2025-10-12 17:00:52,407 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:01:41] 2025-10-12 17:00:52,408 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:01:41] 2025-10-12 17:00:52,561 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:01:41] 2025-10-12 17:00:52,592 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:01:41] 2025-10-12 17:00:52,602 | INFO     | [data] control thread has finished
[2025-10-12 13:01:41] 2025-10-12 17:00:52,696 | INFO     | [job] control thread has finished
[2025-10-12 13:01:41] 2025-10-12 17:00:52,916 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:01:41] 2025-10-12 17:00:53,112 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:01:41] 2025-10-12 17:00:53,338 | INFO     | [payload] control thread has finished
[2025-10-12 13:01:41] 2025-10-12 17:00:53,420 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:01:41] 2025-10-12 17:00:54,019 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:01:41] 2025-10-12 17:00:54,117 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:01:41] 2025-10-12 17:00:56,925 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:01:41] 2025-10-12 17:01:20,447 | INFO     | PID=816165 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 13:01:41] 2025-10-12 17:01:20,448 | INFO     | .. there are 33 such processes running
[2025-10-12 13:01:41] 2025-10-12 17:01:20,448 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:01:41] 2025-10-12 17:01:20,448 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:01:41] 2025-10-12 17:01:20,448 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:01:41] 2025-10-12 17:01:31,704 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:01:41] 2025-10-12 17:01:32,976 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140444665083712)>', '<ExcThread(monitor, started 140443878680320)>']
[2025-10-12 13:01:41] 2025-10-12 17:01:33,538 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:01:41] 2025-10-12 17:01:33,539 | INFO     | [monitor] control thread has ended
[2025-10-12 13:01:41] 2025-10-12 17:01:38,002 | INFO     | all workflow threads have been joined
[2025-10-12 13:01:41] 2025-10-12 17:01:38,002 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:01:41] 2025-10-12 17:01:38,003 | INFO     | traces error code: 0
[2025-10-12 13:01:41] 2025-10-12 17:01:38,003 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:01:41] 2025-10-12 17:01:40,069 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:01:41] 2025-10-12 17:01:40,079 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:01:41] 2025-10-12 17:01:40,081 [wrapper] pilotpid: 816165
[2025-10-12 13:01:41] 2025-10-12 17:01:40,084 [wrapper] Pilot exit status: 0
[2025-10-12 13:01:41] 2025-10-12 17:01:40,521 [wrapper] pandaids: 6839241487
[2025-10-12 13:01:41] 2025-10-12 17:01:41,241 [wrapper] cleanup supervisor_pilot 3150742 816166
[2025-10-12 13:01:41] 2025-10-12 17:01:41,255 [wrapper] Test setup, not cleaning
[2025-10-12 13:01:41] 2025-10-12 17:01:41,286 [wrapper] apfmon messages muted
[2025-10-12 13:01:41] 2025-10-12 17:01:41,305 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:01:41] 2025-10-12 17:01:41,333 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:01:41]  *** Error codes and diagnostics ***
[2025-10-12 13:01:41]     "exeErrorCode": 0,
[2025-10-12 13:01:41]     "exeErrorDiag": "",
[2025-10-12 13:01:41]     "pilotErrorCode": 0,
[2025-10-12 13:01:41]     "pilotErrorDiag": "",
[2025-10-12 13:01:41]  *** Listing of results directory ***
[2025-10-12 13:01:41] total 420812
[2025-10-12 13:01:41] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 21:26 pilot3.tar.gz
[2025-10-12 13:01:41] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 21:36 queuedata.json
[2025-10-12 13:01:41] -rwx------. 1 boincer umatlas     36292 Oct 11 21:37 runpilot2-wrapper.sh
[2025-10-12 13:01:41] -rw-r--r--. 1 boincer umatlas       100 Oct 12 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:01:41] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 00:01 run_atlas
[2025-10-12 13:01:41] -rw-r--r--. 1 boincer umatlas       105 Oct 12 00:01 job.xml
[2025-10-12 13:01:41] -rw-r--r--. 2 boincer umatlas 222050344 Oct 12 00:01 EVNT.46676267._001060.pool.root.1
[2025-10-12 13:01:41] -rw-r--r--. 2 boincer umatlas    569687 Oct 12 00:01 input.tar.gz
[2025-10-12 13:01:41] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 00:01 start_atlas.sh
[2025-10-12 13:01:41] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 00:01 shared
[2025-10-12 13:01:41] -rw-r--r--. 1 boincer umatlas         0 Oct 12 00:01 boinc_lockfile
[2025-10-12 13:01:41] -rw-r--r--. 1 boincer umatlas      2549 Oct 12 00:01 pandaJob.out
[2025-10-12 13:01:41] -rw-------. 1 boincer umatlas    975512 Oct 12 00:03 agis_schedconf.cvmfs.json
[2025-10-12 13:01:41] drwx------. 5 boincer umatlas      4096 Oct 12 00:03 pilot3
[2025-10-12 13:01:41] -rw-r--r--. 1 boincer umatlas      6656 Oct 12 12:55 init_data.xml
[2025-10-12 13:01:41] -rw-------. 1 boincer umatlas 193294068 Oct 12 12:58 HITS.46676269._068716.pool.root.1
[2025-10-12 13:01:41] -rw-r--r--. 1 boincer umatlas       530 Oct 12 12:59 boinc_task_state.xml
[2025-10-12 13:01:41] -rw-------. 1 boincer umatlas      1042 Oct 12 13:00 memory_monitor_summary.json
[2025-10-12 13:01:41] -rw-------. 1 boincer umatlas   1560580 Oct 12 13:00 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:01:41] -rw-------. 1 boincer umatlas    842728 Oct 12 13:00 log.46676269._068716.job.log.tgz.1
[2025-10-12 13:01:41] -rw-------. 1 boincer umatlas        95 Oct 12 13:00 pilot_heartbeat.json
[2025-10-12 13:01:41] -rw-------. 1 boincer umatlas      7826 Oct 12 13:00 heartbeat.json
[2025-10-12 13:01:41] -rw-------. 1 boincer umatlas      4823 Oct 12 13:01 pilotlog.txt
[2025-10-12 13:01:41] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 13:01 boinc_mmap_file
[2025-10-12 13:01:41] -rw-r--r--. 1 boincer umatlas        27 Oct 12 13:01 wrapper_checkpoint.txt
[2025-10-12 13:01:41] -rw-------. 1 boincer umatlas   4989714 Oct 12 13:01 log.46676269._068716.job.log.1
[2025-10-12 13:01:41] -rw-------. 1 boincer umatlas       357 Oct 12 13:01 output.list
[2025-10-12 13:01:41] -rw-r--r--. 1 boincer umatlas       620 Oct 12 13:01 runtime_log
[2025-10-12 13:01:41] -rw-------. 1 boincer umatlas   5847040 Oct 12 13:01 result.tar.gz
[2025-10-12 13:01:41] -rw-------. 1 boincer umatlas       656 Oct 12 13:01 svJODmyC0R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmxEiNDmgbI1Om.diag
[2025-10-12 13:01:41] -rw-r--r--. 1 boincer umatlas      8689 Oct 12 13:01 runtime_log.err
[2025-10-12 13:01:41] -rw-r--r--. 1 boincer umatlas     21012 Oct 12 13:01 stderr.txt
[2025-10-12 13:01:42] HITS file was successfully produced:
[2025-10-12 13:01:42] -rw-------. 1 boincer umatlas 193294068 Oct 12 12:58 shared/HITS.pool.root.1
[2025-10-12 13:01:42]  *** Contents of shared directory: ***
[2025-10-12 13:01:42] total 411908
[2025-10-12 13:01:42] -rw-r--r--. 2 boincer umatlas 222050344 Oct 12 00:01 ATLAS.root_0
[2025-10-12 13:01:42] -rw-r--r--. 2 boincer umatlas    569687 Oct 12 00:01 input.tar.gz
[2025-10-12 13:01:42] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 00:01 start_atlas.sh
[2025-10-12 13:01:42] -rw-------. 1 boincer umatlas 193294068 Oct 12 12:58 HITS.pool.root.1
[2025-10-12 13:01:42] -rw-------. 1 boincer umatlas   5847040 Oct 12 13:01 result.tar.gz
13:01:43 (807189): run_atlas exited; CPU time 50939.847608
13:01:43 (807189): called boinc_finish(0)

</stderr_txt>
]]>

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