Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:00 (818255): wrapper (7.7.26015): starting
00:01:00 (818255): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 00:01:00] Arguments: --nthreads 12
[2025-10-12 00:01:00] Threads: 12
[2025-10-12 00:01:00] Checking for CVMFS
[2025-10-12 00:01:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 00:01:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 00:01:01] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 00:01:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 00:01:01] 2.13.2.0 5060 5172 123280 151606 0 604 24251413 40960001 23360 16776704 0 16896963 99.843 6421171 35916 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 00:01:01] CVMFS is ok
[2025-10-12 00:01:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 00:01:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 00:01:01] Further information can be found at the LHC@home message board.
[2025-10-12 00:01:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 00:01:01] Checking for apptainer binary...
[2025-10-12 00:01:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 00:01:01] Running /usr/bin/apptainer --version
[2025-10-12 00:01:01] apptainer version 1.4.3-1.el9
[2025-10-12 00:01:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 00:01:02] c-212-3.aglt2.org
[2025-10-12 00:01:02] apptainer works
[2025-10-12 00:01:02] Set ATHENA_PROC_NUMBER=12
[2025-10-12 00:01:02] Set ATHENA_CORE_NUMBER=12
[2025-10-12 00:01:02] Starting ATLAS job with PandaID=6838852105
[2025-10-12 00:01:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 04:43:57]  *** The last 200 lines of the pilot log: ***
[2025-10-12 04:43:57] 2025-10-12 08:43:24,953 | INFO     | chi2: 1.417173230008599
[2025-10-12 04:43:57] 2025-10-12 08:43:24,953 | INFO     | current chi2=1.417173230008599 (change=72.83287579051138 %)
[2025-10-12 04:43:57] 2025-10-12 08:43:24,953 | INFO     | sum of square deviations: 5770367271.260368
[2025-10-12 04:43:57] 2025-10-12 08:43:24,955 | INFO     | sum of deviations: 54324370896.83396
[2025-10-12 04:43:57] 2025-10-12 08:43:24,955 | INFO     | mean x: 1760250509.1471698
[2025-10-12 04:43:57] 2025-10-12 08:43:24,955 | INFO     | mean y: 2633389.6452830187
[2025-10-12 04:43:57] 2025-10-12 08:43:24,955 | INFO     | -- intersect: -16569015698.70907
[2025-10-12 04:43:57] 2025-10-12 08:43:24,955 | INFO     | intersect: -16569015698.70907
[2025-10-12 04:43:57] 2025-10-12 08:43:24,955 | INFO     | chi2: 0.4367462970516351
[2025-10-12 04:43:57] 2025-10-12 08:43:24,955 | INFO     | current chi2=0.4367462970516351 (change=69.18186938593351 %)
[2025-10-12 04:43:57] 2025-10-12 08:43:24,956 | INFO     | sum of square deviations: 5449847041.149992
[2025-10-12 04:43:57] 2025-10-12 08:43:24,957 | INFO     | sum of deviations: 26377025245.55
[2025-10-12 04:43:57] 2025-10-12 08:43:24,957 | INFO     | mean x: 1760250661.65
[2025-10-12 04:43:57] 2025-10-12 08:43:24,957 | INFO     | mean y: 2646660.8961538463
[2025-10-12 04:43:57] 2025-10-12 08:43:24,957 | INFO     | -- intersect: -8516890821.579821
[2025-10-12 04:43:57] 2025-10-12 08:43:24,957 | INFO     | intersect: -8516890821.579821
[2025-10-12 04:43:57] 2025-10-12 08:43:24,958 | INFO     | chi2: 0.10783969112559852
[2025-10-12 04:43:57] 2025-10-12 08:43:24,958 | INFO     | current chi2=0.10783969112559852 (change=75.30839028204767 %)
[2025-10-12 04:43:57] 2025-10-12 08:43:24,958 | INFO     | sum of square deviations: 5141420061.035332
[2025-10-12 04:43:57] 2025-10-12 08:43:24,959 | INFO     | sum of deviations: 12440579453.635292
[2025-10-12 04:43:57] 2025-10-12 08:43:24,960 | INFO     | mean x: 1760250814.1529412
[2025-10-12 04:43:57] 2025-10-12 08:43:24,960 | INFO     | mean y: 2653519.4196078433
[2025-10-12 04:43:57] 2025-10-12 08:43:24,960 | INFO     | -- intersect: -4256586117.068322
[2025-10-12 04:43:57] 2025-10-12 08:43:24,960 | INFO     | intersect: -4256586117.068322
[2025-10-12 04:43:57] 2025-10-12 08:43:24,960 | INFO     | chi2: 0.008185794947869727
[2025-10-12 04:43:57] 2025-10-12 08:43:24,960 | INFO     | current chi2=0.008185794947869727 (change=92.409293032622 %)
[2025-10-12 04:43:57] 2025-10-12 08:43:24,960 | INFO     | sum of square deviations: 4844853768.416018
[2025-10-12 04:43:57] 2025-10-12 08:43:24,962 | INFO     | sum of deviations: 9772545857.503998
[2025-10-12 04:43:57] 2025-10-12 08:43:24,962 | INFO     | mean x: 1760250966.656
[2025-10-12 04:43:57] 2025-10-12 08:43:24,962 | INFO     | mean y: 2654889.064
[2025-10-12 04:43:57] 2025-10-12 08:43:24,962 | INFO     | -- intersect: -3547944182.574355
[2025-10-12 04:43:57] 2025-10-12 08:43:24,962 | INFO     | intersect: -3547944182.574355
[2025-10-12 04:43:57] 2025-10-12 08:43:24,962 | INFO     | chi2: 0.006127081007749375
[2025-10-12 04:43:57] 2025-10-12 08:43:24,962 | INFO     | current chi2=0.006127081007749375 (change=25.149835211253514 %)
[2025-10-12 04:43:57] 2025-10-12 08:43:24,963 | INFO     | sum of square deviations: 4559930850.106092
[2025-10-12 04:43:57] 2025-10-12 08:43:24,964 | INFO     | sum of deviations: 8610893880.371426
[2025-10-12 04:43:57] 2025-10-12 08:43:24,964 | INFO     | mean x: 1760251119.155102
[2025-10-12 04:43:57] 2025-10-12 08:43:24,964 | INFO     | mean y: 2655509.5428571426
[2025-10-12 04:43:57] 2025-10-12 08:43:24,964 | INFO     | -- intersect: -3321372000.5447063
[2025-10-12 04:43:57] 2025-10-12 08:43:24,964 | INFO     | intersect: -3321372000.5447063
[2025-10-12 04:43:57] 2025-10-12 08:43:24,965 | INFO     | chi2: 0.005908376806296891
[2025-10-12 04:43:57] 2025-10-12 08:43:24,965 | INFO     | current chi2=0.005908376806296891 (change=3.569468090529123 %)
[2025-10-12 04:43:57] 2025-10-12 08:43:24,965 | INFO     | left removable region: 60
[2025-10-12 04:43:57] 2025-10-12 08:43:24,965 | INFO     | sum of square deviations: 2830758102.248816
[2025-10-12 04:43:57] 2025-10-12 08:43:24,966 | INFO     | sum of deviations: 8507179994.86603
[2025-10-12 04:43:57] 2025-10-12 08:43:24,966 | INFO     | mean x: 1760251851.1339712
[2025-10-12 04:43:57] 2025-10-12 08:43:24,966 | INFO     | mean y: 2654227.004784689
[2025-10-12 04:43:57] 2025-10-12 08:43:24,966 | INFO     | -- intersect: -5287370138.551751
[2025-10-12 04:43:57] 2025-10-12 08:43:24,966 | INFO     | intersect: -5287370138.551751
[2025-10-12 04:43:57] 2025-10-12 08:43:24,967 | INFO     | chi2: 0.0033413268458669216
[2025-10-12 04:43:57] 2025-10-12 08:43:24,967 | INFO     | -- intersect: -5287370138.551751
[2025-10-12 04:43:57] 2025-10-12 08:43:24,967 | INFO     | current memory leak: 3.01 B/s (using 209 data points, chi2=0.00)
[2025-10-12 04:43:57] 2025-10-12 08:43:24,967 | INFO     | could have reported an average CPU frequency of 2970 MHz (13 samples)
[2025-10-12 04:43:57] 2025-10-12 08:43:24,968 | INFO     | ..............................
[2025-10-12 04:43:57] 2025-10-12 08:43:24,968 | INFO     | . Timing measurements:
[2025-10-12 04:43:57] 2025-10-12 08:43:24,968 | INFO     | . get job = 0 s
[2025-10-12 04:43:57] 2025-10-12 08:43:24,968 | INFO     | . initial setup = 4 s
[2025-10-12 04:43:57] 2025-10-12 08:43:24,968 | INFO     | . payload setup = 36 s
[2025-10-12 04:43:57] 2025-10-12 08:43:24,968 | INFO     | . stage-in = 0 s
[2025-10-12 04:43:57] 2025-10-12 08:43:24,968 | INFO     | . payload execution = 16769 s
[2025-10-12 04:43:57] 2025-10-12 08:43:24,968 | INFO     | . stage-out = 1 s
[2025-10-12 04:43:57] 2025-10-12 08:43:24,968 | INFO     | . log creation = 0 s
[2025-10-12 04:43:57] 2025-10-12 08:43:24,968 | INFO     | ..............................
[2025-10-12 04:43:57] 2025-10-12 08:43:25,049 | INFO     | 
[2025-10-12 04:43:57] 2025-10-12 08:43:25,049 | INFO     | job summary report
[2025-10-12 04:43:57] 2025-10-12 08:43:25,049 | INFO     | --------------------------------------------------
[2025-10-12 04:43:57] 2025-10-12 08:43:25,050 | INFO     | PanDA job id: 6838852105
[2025-10-12 04:43:57] 2025-10-12 08:43:25,050 | INFO     | task id: 46676269
[2025-10-12 04:43:57] 2025-10-12 08:43:25,050 | INFO     | errors: (none)
[2025-10-12 04:43:57] 2025-10-12 08:43:25,050 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 04:43:57] 2025-10-12 08:43:25,050 | INFO     | pilot state: finished 
[2025-10-12 04:43:57] 2025-10-12 08:43:25,050 | INFO     | transexitcode: 0
[2025-10-12 04:43:57] 2025-10-12 08:43:25,050 | INFO     | exeerrorcode: 0
[2025-10-12 04:43:57] 2025-10-12 08:43:25,050 | INFO     | exeerrordiag: 
[2025-10-12 04:43:57] 2025-10-12 08:43:25,050 | INFO     | exitcode: 0
[2025-10-12 04:43:57] 2025-10-12 08:43:25,050 | INFO     | exitmsg: OK
[2025-10-12 04:43:57] 2025-10-12 08:43:25,050 | INFO     | cpuconsumptiontime: 39428 s
[2025-10-12 04:43:57] 2025-10-12 08:43:25,050 | INFO     | nevents: 400
[2025-10-12 04:43:57] 2025-10-12 08:43:25,050 | INFO     | neventsw: 0
[2025-10-12 04:43:57] 2025-10-12 08:43:25,050 | INFO     | pid: 856293
[2025-10-12 04:43:57] 2025-10-12 08:43:25,050 | INFO     | pgrp: 856293
[2025-10-12 04:43:57] 2025-10-12 08:43:25,051 | INFO     | corecount: 12
[2025-10-12 04:43:57] 2025-10-12 08:43:25,051 | INFO     | event service: False
[2025-10-12 04:43:57] 2025-10-12 08:43:25,051 | INFO     | sizes: {0: 2348029, 1: 2348630, 2: 2348742, 3: 2348742, 4: 2348969, 15: 2348969, 26: 2349125, 32: 2349415, 37: 2349443, 16809: 2381248, 16810: 2381247, 16813: 2390
[2025-10-12 04:43:57] 2025-10-12 08:43:25,051 | INFO     | --------------------------------------------------
[2025-10-12 04:43:57] 2025-10-12 08:43:25,051 | INFO     | 
[2025-10-12 04:43:57] 2025-10-12 08:43:25,051 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-10-12 04:43:57] 2025-10-12 08:43:25,073 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 04:43:57] 2025-10-12 08:43:25,073 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 04:43:57] 2025-10-12 08:43:25,073 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 04:43:57] 2025-10-12 08:43:25,073 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 04:43:57] 2025-10-12 08:43:25,074 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 04:43:57] 2025-10-12 08:43:25,074 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 04:43:57] 2025-10-12 08:43:25,074 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 04:43:57] 2025-10-12 08:43:25,074 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 04:43:57] 2025-10-12 08:43:25,074 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 04:43:57] 2025-10-12 08:43:25,074 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 04:43:57] 2025-10-12 08:43:25,074 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 04:43:57] 2025-10-12 08:43:25,074 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 04:43:57] 2025-10-12 08:43:25,074 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 04:43:57] 2025-10-12 08:43:25,074 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 04:43:57] 2025-10-12 08:43:25,074 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 04:43:57] 2025-10-12 08:43:25,074 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 04:43:57] 2025-10-12 08:43:25,074 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 04:43:57] 2025-10-12 08:43:25,074 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 04:43:57] 2025-10-12 08:43:25,075 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 04:43:57] 2025-10-12 08:43:25,075 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 04:43:57] 2025-10-12 08:43:25,075 | INFO     | job 6838852105 has completed (purged errors)
[2025-10-12 04:43:57] 2025-10-12 08:43:25,075 | INFO     | overall cleanup function is called
[2025-10-12 04:43:57] 2025-10-12 08:43:26,084 | INFO     | --- collectZombieJob: --- 10, [856293]
[2025-10-12 04:43:57] 2025-10-12 08:43:26,084 | INFO     | zombie collector waiting for pid 856293
[2025-10-12 04:43:57] 2025-10-12 08:43:26,087 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 04:43:57] 2025-10-12 08:43:26,087 | INFO     | collected zombie processes
[2025-10-12 04:43:57] 2025-10-12 08:43:26,087 | INFO     | will attempt to kill all subprocesses of pid=856293
[2025-10-12 04:43:57] 2025-10-12 08:43:26,541 | INFO     | process IDs to be killed: [856293] (in reverse order)
[2025-10-12 04:43:57] 2025-10-12 08:43:26,667 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 04:43:57] 2025-10-12 08:43:26,667 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 04:43:57] 2025-10-12 08:43:26,683 | INFO     | did not find any defunct processes belonging to 856293
[2025-10-12 04:43:57] 2025-10-12 08:43:26,699 | INFO     | did not find any defunct processes belonging to 856293
[2025-10-12 04:43:57] 2025-10-12 08:43:26,699 | INFO     | ready for new job
[2025-10-12 04:43:57] 2025-10-12 08:43:26,699 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 04:43:57] 2025-10-12 08:43:26,701 | INFO     | ***************************************
[2025-10-12 04:43:57] 2025-10-12 08:43:26,701 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 04:43:57] 2025-10-12 08:43:26,701 | INFO     | ***************************************
[2025-10-12 04:43:57] 2025-10-12 08:43:26,701 | INFO     | 
[2025-10-12 04:43:57] 2025-10-12 08:43:26,706 | INFO     | architecture information:
[2025-10-12 04:43:57] 2025-10-12 08:43:26,707 | INFO     | executing command: cat /etc/os-release
[2025-10-12 04:43:57] 2025-10-12 08:43:26,722 | INFO     | cat /etc/os-release:
[2025-10-12 04:43:57] NAME="CentOS Linux"
[2025-10-12 04:43:57] VERSION="7 (Core)"
[2025-10-12 04:43:57] ID="centos"
[2025-10-12 04:43:57] ID_LIKE="rhel fedora"
[2025-10-12 04:43:57] VERSION_ID="7"
[2025-10-12 04:43:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 04:43:57] ANSI_COLOR="0;31"
[2025-10-12 04:43:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 04:43:57] HOME_URL="https://www.centos.org/"
[2025-10-12 04:43:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 04:43:57] 
[2025-10-12 04:43:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 04:43:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 04:43:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 04:43:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 04:43:57] 
[2025-10-12 04:43:57] 2025-10-12 08:43:26,723 | INFO     | ***************************************
[2025-10-12 04:43:57] 2025-10-12 08:43:27,226 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-10-12 04:43:57] 2025-10-12 08:43:27,249 | INFO     | sufficient remaining disk space (127619039232 B)
[2025-10-12 04:43:57] 2025-10-12 08:43:27,249 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 04:43:57] 2025-10-12 08:43:27,249 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 04:43:57] 2025-10-12 08:43:27,250 | INFO     | update_server=False
[2025-10-12 04:43:57] 2025-10-12 08:43:27,250 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 04:43:57] 2025-10-12 08:43:27,315 | INFO     | all data control threads have been joined
[2025-10-12 04:43:57] 2025-10-12 08:43:27,352 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 04:43:57] 2025-10-12 08:43:27,352 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 04:43:57] 2025-10-12 08:43:27,353 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 04:43:57] 2025-10-12 08:43:27,353 | INFO     | will abort loop
[2025-10-12 04:43:57] 2025-10-12 08:43:27,919 | INFO     | [monitor] cgroup control has ended
[2025-10-12 04:43:57] 2025-10-12 08:43:28,049 | INFO     | all payload control threads have been joined
[2025-10-12 04:43:57] 2025-10-12 08:43:28,255 | INFO     | [job] retrieve thread has finished
[2025-10-12 04:43:57] 2025-10-12 08:43:28,321 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 04:43:57] 2025-10-12 08:43:28,321 | INFO     | [data] control thread has finished
[2025-10-12 04:43:57] 2025-10-12 08:43:28,358 | INFO     | [job] job monitor thread has finished
[2025-10-12 04:43:57] 2025-10-12 08:43:28,380 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 04:43:57] 2025-10-12 08:43:28,468 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 04:43:57] 2025-10-12 08:43:28,523 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 04:43:57] 2025-10-12 08:43:28,548 | INFO     | all job control threads have been joined
[2025-10-12 04:43:57] 2025-10-12 08:43:28,812 | INFO     | [payload] validate_post thread has finished
[2025-10-12 04:43:57] 2025-10-12 08:43:28,819 | INFO     | [job] validate thread has finished
[2025-10-12 04:43:57] 2025-10-12 08:43:28,884 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 04:43:57] 2025-10-12 08:43:29,055 | INFO     | [payload] control thread has finished
[2025-10-12 04:43:57] 2025-10-12 08:43:29,461 | INFO     | [data] copytool_in thread has finished
[2025-10-12 04:43:57] 2025-10-12 08:43:29,471 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 04:43:57] 2025-10-12 08:43:29,552 | INFO     | [job] control thread has finished
[2025-10-12 04:43:57] 2025-10-12 08:43:29,627 | INFO     | [payload] failed_post thread has finished
[2025-10-12 04:43:57] 2025-10-12 08:43:30,063 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 04:43:57] 2025-10-12 08:43:30,328 | INFO     | [data] copytool_out thread has finished
[2025-10-12 04:43:57] 2025-10-12 08:43:31,068 | INFO     | [job] queue monitor thread has finished
[2025-10-12 04:43:57] 2025-10-12 08:43:32,389 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 04:43:57] 2025-10-12 08:43:33,385 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140171448665920)>', '<ExcThread(monitor, started 140170678494976)>']
[2025-10-12 04:43:57] 2025-10-12 08:43:38,410 | INFO     | all workflow threads have been joined
[2025-10-12 04:43:57] 2025-10-12 08:43:38,410 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 04:43:57] 2025-10-12 08:43:38,411 | INFO     | traces error code: 0
[2025-10-12 04:43:57] 2025-10-12 08:43:38,411 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 04:43:57] 2025-10-12 08:43:56,703 | INFO     | PID=827345 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 04:43:57] 2025-10-12 08:43:56,703 | INFO     | .. there are 22 such processes running
[2025-10-12 04:43:57] 2025-10-12 08:43:56,704 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 04:43:57] 2025-10-12 08:43:56,704 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 04:43:57] 2025-10-12 08:43:56,704 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 04:43:57] 2025-10-12 08:43:56,704 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 04:43:57] 2025-10-12 08:43:56,704 | INFO     | [monitor] control thread has ended
[2025-10-12 04:43:57] 2025-10-12 08:43:56,870 [wrapper] ==== pilot stdout END ====
[2025-10-12 04:43:57] 2025-10-12 08:43:56,927 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 04:43:57] 2025-10-12 08:43:56,963 [wrapper] pilotpid: 827345
[2025-10-12 04:43:57] 2025-10-12 08:43:57,003 [wrapper] Pilot exit status: 0
[2025-10-12 04:43:57] 2025-10-12 08:43:57,017 [wrapper] pandaids: 6838852105
[2025-10-12 04:43:57] 2025-10-12 08:43:57,101 [wrapper] cleanup supervisor_pilot 1698934 827346
[2025-10-12 04:43:57] 2025-10-12 08:43:57,111 [wrapper] Test setup, not cleaning
[2025-10-12 04:43:57] 2025-10-12 08:43:57,114 [wrapper] apfmon messages muted
[2025-10-12 04:43:57] 2025-10-12 08:43:57,117 [wrapper] ==== wrapper stdout END ====
[2025-10-12 04:43:57] 2025-10-12 08:43:57,119 [wrapper] ==== wrapper stderr END ====
[2025-10-12 04:43:57]  *** Error codes and diagnostics ***
[2025-10-12 04:43:57]     "exeErrorCode": 0,
[2025-10-12 04:43:57]     "exeErrorDiag": "",
[2025-10-12 04:43:57]     "pilotErrorCode": 0,
[2025-10-12 04:43:57]     "pilotErrorDiag": "",
[2025-10-12 04:43:57]  *** Listing of results directory ***
[2025-10-12 04:43:57] total 412836
[2025-10-12 04:43:57] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 16:21 pilot3.tar.gz
[2025-10-12 04:43:57] -rwx------. 1 boincer umatlas     36292 Oct 11 16:25 runpilot2-wrapper.sh
[2025-10-12 04:43:57] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 16:25 queuedata.json
[2025-10-12 04:43:57] -rw-r--r--. 1 boincer umatlas       100 Oct 12 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 04:43:57] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 00:00 run_atlas
[2025-10-12 04:43:57] -rw-r--r--. 1 boincer umatlas       105 Oct 12 00:00 job.xml
[2025-10-12 04:43:57] -rw-r--r--. 2 boincer umatlas 219581621 Oct 12 00:01 EVNT.46676267._002580.pool.root.1
[2025-10-12 04:43:57] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 00:01 shared
[2025-10-12 04:43:57] -rw-r--r--. 2 boincer umatlas    569676 Oct 12 00:01 input.tar.gz
[2025-10-12 04:43:57] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 00:01 start_atlas.sh
[2025-10-12 04:43:57] -rw-r--r--. 1 boincer umatlas         0 Oct 12 00:01 boinc_lockfile
[2025-10-12 04:43:57] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 00:01 pandaJob.out
[2025-10-12 04:43:57] -rw-------. 1 boincer umatlas    975512 Oct 12 00:01 agis_schedconf.cvmfs.json
[2025-10-12 04:43:57] drwx------. 5 boincer umatlas      4096 Oct 12 00:01 pilot3
[2025-10-12 04:43:57] -rw-r--r--. 1 boincer umatlas      6947 Oct 12 04:38 init_data.xml
[2025-10-12 04:43:57] -rw-------. 1 boincer umatlas 194116279 Oct 12 04:42 HITS.46676269._064200.pool.root.1
[2025-10-12 04:43:57] -rw-r--r--. 1 boincer umatlas       531 Oct 12 04:42 boinc_task_state.xml
[2025-10-12 04:43:57] -rw-------. 1 boincer umatlas      1042 Oct 12 04:43 memory_monitor_summary.json
[2025-10-12 04:43:57] -rw-------. 1 boincer umatlas   1560580 Oct 12 04:43 agis_ddmendpoints.agis.ALL.json
[2025-10-12 04:43:57] -rw-------. 1 boincer umatlas    547717 Oct 12 04:43 log.46676269._064200.job.log.tgz.1
[2025-10-12 04:43:57] -rw-------. 1 boincer umatlas      7796 Oct 12 04:43 heartbeat.json
[2025-10-12 04:43:57] -rw-r--r--. 1 boincer umatlas        28 Oct 12 04:43 wrapper_checkpoint.txt
[2025-10-12 04:43:57] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 04:43 boinc_mmap_file
[2025-10-12 04:43:57] -rw-------. 1 boincer umatlas        95 Oct 12 04:43 pilot_heartbeat.json
[2025-10-12 04:43:57] -rw-------. 1 boincer umatlas       822 Oct 12 04:43 pilotlog.txt
[2025-10-12 04:43:57] -rw-------. 1 boincer umatlas   2027352 Oct 12 04:43 log.46676269._064200.job.log.1
[2025-10-12 04:43:57] -rw-------. 1 boincer umatlas       357 Oct 12 04:43 output.list
[2025-10-12 04:43:57] -rw-r--r--. 1 boincer umatlas       620 Oct 12 04:43 runtime_log
[2025-10-12 04:43:57] -rw-------. 1 boincer umatlas   2590720 Oct 12 04:43 result.tar.gz
[2025-10-12 04:43:57] -rw-r--r--. 1 boincer umatlas      8701 Oct 12 04:43 runtime_log.err
[2025-10-12 04:43:57] -rw-------. 1 boincer umatlas       655 Oct 12 04:43 krfMDmKLvR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmyVSMDmXY1yLn.diag
[2025-10-12 04:43:57] -rw-r--r--. 1 boincer umatlas     21092 Oct 12 04:43 stderr.txt
[2025-10-12 04:43:57] HITS file was successfully produced:
[2025-10-12 04:43:57] -rw-------. 1 boincer umatlas 194116279 Oct 12 04:42 shared/HITS.pool.root.1
[2025-10-12 04:43:57]  *** Contents of shared directory: ***
[2025-10-12 04:43:57] total 407120
[2025-10-12 04:43:57] -rw-r--r--. 2 boincer umatlas 219581621 Oct 12 00:01 ATLAS.root_0
[2025-10-12 04:43:57] -rw-r--r--. 2 boincer umatlas    569676 Oct 12 00:01 input.tar.gz
[2025-10-12 04:43:57] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 00:01 start_atlas.sh
[2025-10-12 04:43:57] -rw-------. 1 boincer umatlas 194116279 Oct 12 04:42 HITS.pool.root.1
[2025-10-12 04:43:57] -rw-------. 1 boincer umatlas   2590720 Oct 12 04:43 result.tar.gz
04:43:58 (818255): run_atlas exited; CPU time 39950.644614
04:43:58 (818255): called boinc_finish(0)

</stderr_txt>
]]>

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