Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:19 (12991): wrapper (7.7.26015): starting
00:00:19 (12991): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 00:00:19] Arguments: --nthreads 12
[2025-10-12 00:00:19] Threads: 12
[2025-10-12 00:00:19] Checking for CVMFS
[2025-10-12 00:00:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 00:00:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 00:00:19] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 00:00:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 00:00:19] 2.11.2.0 2979 222374 105488 151606 3 57 14895410 20275200 1 130560 2 108063663 99.984 13023797 11995 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 00:00:19] CVMFS is ok
[2025-10-12 00:00:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 00:00:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 00:00:19] Further information can be found at the LHC@home message board.
[2025-10-12 00:00:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 00:00:19] Checking for apptainer binary...
[2025-10-12 00:00:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 00:00:19] Running /usr/bin/apptainer --version
[2025-10-12 00:00:19] apptainer version 1.3.2-1.el7
[2025-10-12 00:00:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 00:00:21] c-205-7.aglt2.org
[2025-10-12 00:00:21] apptainer works
[2025-10-12 00:00:21] Set ATHENA_PROC_NUMBER=12
[2025-10-12 00:00:21] Set ATHENA_CORE_NUMBER=12
[2025-10-12 00:00:21] Starting ATLAS job with PandaID=6838851898
[2025-10-12 00:00:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 01:11:48]  *** The last 200 lines of the pilot log: ***
[2025-10-12 01:11:48]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4e/ec/log.46676269._063993.job.log.tgz.1
[2025-10-12 01:11:48]  workdir=None
[2025-10-12 01:11:48] ]
[2025-10-12 01:11:48] 2025-10-12 05:10:47,140 | INFO     | transferring file log.46676269._063993.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6838851898/log.46676269._063993.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 01:11:48] 2025-10-12 05:10:47,140 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6838851898/log.46676269._063993.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._063993.job
[2025-10-12 01:11:48] 2025-10-12 05:10:47,164 | INFO     | adding to output.list: log.46676269._063993.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4e/ec/log.46676269._063993.job.log.tg
[2025-10-12 01:11:48] 2025-10-12 05:10:47,165 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 01:11:48] 2025-10-12 05:10:47,165 | INFO     | summary of transferred files:
[2025-10-12 01:11:48] 2025-10-12 05:10:47,165 | INFO     |  -- lfn=log.46676269._063993.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 01:11:48] 2025-10-12 05:10:47,166 | INFO     | stage-out finished correctly
[2025-10-12 01:11:48] 2025-10-12 05:10:47,250 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 01:11:48] 2025-10-12 05:10:47,435 | INFO     | time since job start (4211s) is within the limit (172800.0s)
[2025-10-12 01:11:48] 2025-10-12 05:10:49,440 | INFO     | time since job start (4213s) is within the limit (172800.0s)
[2025-10-12 01:11:48] 2025-10-12 05:10:49,931 | INFO     | job 6838851898 has state=finished
[2025-10-12 01:11:48] 2025-10-12 05:10:49,931 | INFO     | preparing for final server update for job 6838851898 in state='finished'
[2025-10-12 01:11:48] 2025-10-12 05:10:49,932 | INFO     | this job has now completed (state=finished)
[2025-10-12 01:11:48] 2025-10-12 05:10:49,932 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 01:11:48] 2025-10-12 05:10:49,932 | INFO     | log transfer has been attempted: DONE
[2025-10-12 01:11:48] 2025-10-12 05:10:49,932 | INFO     | job 6838851898 has finished - writing final server update
[2025-10-12 01:11:48] 2025-10-12 05:10:49,933 | INFO     | total number of processed events: 400 (read)
[2025-10-12 01:11:48] 2025-10-12 05:10:49,933 | INFO     | executing command: lscpu
[2025-10-12 01:11:48] 2025-10-12 05:10:49,960 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 01:11:48] 2025-10-12 05:10:50,291 | WARNING  | process 23018 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 01:11:48] 2025-10-12 05:10:50,291 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6838851898/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 01:11:48] 2025-10-12 05:10:50,379 | INFO     | number of running child processes to parent process 23018: 1
[2025-10-12 01:11:48] 2025-10-12 05:10:50,379 | INFO     | maximum number of monitored processes: 6
[2025-10-12 01:11:48] 2025-10-12 05:10:51,445 | INFO     | time since job start (4215s) is within the limit (172800.0s)
[2025-10-12 01:11:48] 2025-10-12 05:10:52,566 | INFO     | PID=16666 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 01:11:48] 2025-10-12 05:10:52,882 | INFO     | monitor loop #313: job 0:6838851898 is in state 'finished'
[2025-10-12 01:11:48] 2025-10-12 05:10:52,882 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 01:11:48] 2025-10-12 05:10:53,567 | INFO     | time since job start (4217s) is within the limit (172800.0s)
[2025-10-12 01:11:48] 2025-10-12 05:10:55,385 | INFO     | monitor loop #314: job 0:6838851898 is in state 'finished'
[2025-10-12 01:11:48] 2025-10-12 05:10:55,385 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 01:11:48] 2025-10-12 05:10:55,572 | INFO     | time since job start (4219s) is within the limit (172800.0s)
[2025-10-12 01:11:48] 2025-10-12 05:10:55,788 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 01:11:48] 2025-10-12 05:10:55,792 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-10-12 01:11:48] 2025-10-12 05:10:55,794 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6838851898/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 01:11:48] 2025-10-12 05:10:55,795 | INFO     | extracted standard info from prmon json
[2025-10-12 01:11:48] 2025-10-12 05:10:55,795 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 01:11:48] 2025-10-12 05:10:55,795 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 01:11:48] 2025-10-12 05:10:55,796 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 01:11:48] 2025-10-12 05:10:55,796 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 01:11:48] 2025-10-12 05:10:55,798 | INFO     | fitting pss+swap vs Time
[2025-10-12 01:11:48] 2025-10-12 05:10:55,798 | INFO     | sum of square deviations: 73882315.5
[2025-10-12 01:11:48] 2025-10-12 05:10:55,798 | INFO     | sum of deviations: -67643296.50000001
[2025-10-12 01:11:48] 2025-10-12 05:10:55,798 | INFO     | mean x: 1760243830.5
[2025-10-12 01:11:48] 2025-10-12 05:10:55,798 | INFO     | mean y: 2676957.5322580645
[2025-10-12 01:11:48] 2025-10-12 05:10:55,798 | INFO     | -- intersect: 1614276357.645906
[2025-10-12 01:11:48] 2025-10-12 05:10:55,799 | INFO     | intersect: 1614276357.645906
[2025-10-12 01:11:48] 2025-10-12 05:10:55,799 | INFO     | chi2: 0.004093663590074617
[2025-10-12 01:11:48] 2025-10-12 05:10:55,799 | INFO     | -- intersect: 1614276357.645906
[2025-10-12 01:11:48] 2025-10-12 05:10:55,799 | INFO     | current memory leak: -0.92 B/s (using 62 data points, chi2=0.00)
[2025-10-12 01:11:48] 2025-10-12 05:10:55,799 | INFO     | could have reported an average CPU frequency of 2050 MHz (6 samples)
[2025-10-12 01:11:48] 2025-10-12 05:10:55,799 | INFO     | ..............................
[2025-10-12 01:11:48] 2025-10-12 05:10:55,800 | INFO     | . Timing measurements:
[2025-10-12 01:11:48] 2025-10-12 05:10:55,800 | INFO     | . get job = 0 s
[2025-10-12 01:11:48] 2025-10-12 05:10:55,800 | INFO     | . initial setup = 2 s
[2025-10-12 01:11:48] 2025-10-12 05:10:55,800 | INFO     | . payload setup = 7 s
[2025-10-12 01:11:48] 2025-10-12 05:10:55,800 | INFO     | . stage-in = 0 s
[2025-10-12 01:11:48] 2025-10-12 05:10:55,800 | INFO     | . payload execution = 4182 s
[2025-10-12 01:11:48] 2025-10-12 05:10:55,800 | INFO     | . stage-out = 0 s
[2025-10-12 01:11:48] 2025-10-12 05:10:55,800 | INFO     | . log creation = 0 s
[2025-10-12 01:11:48] 2025-10-12 05:10:55,800 | INFO     | ..............................
[2025-10-12 01:11:48] 2025-10-12 05:10:55,881 | INFO     | 
[2025-10-12 01:11:48] 2025-10-12 05:10:55,881 | INFO     | job summary report
[2025-10-12 01:11:48] 2025-10-12 05:10:55,881 | INFO     | --------------------------------------------------
[2025-10-12 01:11:48] 2025-10-12 05:10:55,882 | INFO     | PanDA job id: 6838851898
[2025-10-12 01:11:48] 2025-10-12 05:10:55,882 | INFO     | task id: 46676269
[2025-10-12 01:11:48] 2025-10-12 05:10:55,882 | INFO     | errors: (none)
[2025-10-12 01:11:48] 2025-10-12 05:10:55,882 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 01:11:48] 2025-10-12 05:10:55,882 | INFO     | pilot state: finished 
[2025-10-12 01:11:48] 2025-10-12 05:10:55,882 | INFO     | transexitcode: 0
[2025-10-12 01:11:48] 2025-10-12 05:10:55,883 | INFO     | exeerrorcode: 0
[2025-10-12 01:11:48] 2025-10-12 05:10:55,883 | INFO     | exeerrordiag: 
[2025-10-12 01:11:48] 2025-10-12 05:10:55,883 | INFO     | exitcode: 0
[2025-10-12 01:11:48] 2025-10-12 05:10:55,883 | INFO     | exitmsg: OK
[2025-10-12 01:11:48] 2025-10-12 05:10:55,883 | INFO     | cpuconsumptiontime: 45389 s
[2025-10-12 01:11:48] 2025-10-12 05:10:55,883 | INFO     | nevents: 400
[2025-10-12 01:11:48] 2025-10-12 05:10:55,884 | INFO     | neventsw: 0
[2025-10-12 01:11:48] 2025-10-12 05:10:55,884 | INFO     | pid: 23018
[2025-10-12 01:11:48] 2025-10-12 05:10:55,884 | INFO     | pgrp: 23018
[2025-10-12 01:11:48] 2025-10-12 05:10:55,884 | INFO     | corecount: 12
[2025-10-12 01:11:48] 2025-10-12 05:10:55,884 | INFO     | event service: False
[2025-10-12 01:11:48] 2025-10-12 05:10:55,884 | INFO     | sizes: {0: 2348029, 1: 2348885, 6: 2349147, 12: 2349175, 4193: 2375071, 4194: 2384253, 4203: 2384391}
[2025-10-12 01:11:48] 2025-10-12 05:10:55,884 | INFO     | --------------------------------------------------
[2025-10-12 01:11:48] 2025-10-12 05:10:55,885 | INFO     | 
[2025-10-12 01:11:48] 2025-10-12 05:10:55,885 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 01:11:48] 2025-10-12 05:10:55,907 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 01:11:48] 2025-10-12 05:10:55,908 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 01:11:48] 2025-10-12 05:10:55,908 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 01:11:48] 2025-10-12 05:10:55,908 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 01:11:48] 2025-10-12 05:10:55,908 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 01:11:48] 2025-10-12 05:10:55,908 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 01:11:48] 2025-10-12 05:10:55,909 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 01:11:48] 2025-10-12 05:10:55,909 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 01:11:48] 2025-10-12 05:10:55,909 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 01:11:48] 2025-10-12 05:10:55,909 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 01:11:48] 2025-10-12 05:10:55,909 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 01:11:48] 2025-10-12 05:10:55,909 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 01:11:48] 2025-10-12 05:10:55,910 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 01:11:48] 2025-10-12 05:10:55,910 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 01:11:48] 2025-10-12 05:10:55,910 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 01:11:48] 2025-10-12 05:10:55,910 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 01:11:48] 2025-10-12 05:10:55,910 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 01:11:48] 2025-10-12 05:10:55,910 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 01:11:48] 2025-10-12 05:10:55,911 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 01:11:48] 2025-10-12 05:10:55,911 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 01:11:48] 2025-10-12 05:10:55,911 | INFO     | job 6838851898 has completed (purged errors)
[2025-10-12 01:11:48] 2025-10-12 05:10:55,911 | INFO     | overall cleanup function is called
[2025-10-12 01:11:48] 2025-10-12 05:10:56,920 | INFO     | --- collectZombieJob: --- 10, [23018]
[2025-10-12 01:11:48] 2025-10-12 05:10:56,920 | INFO     | zombie collector waiting for pid 23018
[2025-10-12 01:11:48] 2025-10-12 05:10:56,920 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 01:11:48] 2025-10-12 05:10:56,920 | INFO     | collected zombie processes
[2025-10-12 01:11:48] 2025-10-12 05:10:56,920 | INFO     | will attempt to kill all subprocesses of pid=23018
[2025-10-12 01:11:48] 2025-10-12 05:10:57,013 | INFO     | process IDs to be killed: [23018] (in reverse order)
[2025-10-12 01:11:48] 2025-10-12 05:10:57,062 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 01:11:48] 2025-10-12 05:10:57,063 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 01:11:48] 2025-10-12 05:10:57,066 | INFO     | did not find any defunct processes belonging to 23018
[2025-10-12 01:11:48] 2025-10-12 05:10:57,069 | INFO     | did not find any defunct processes belonging to 23018
[2025-10-12 01:11:48] 2025-10-12 05:10:57,069 | INFO     | ready for new job
[2025-10-12 01:11:48] 2025-10-12 05:10:57,070 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 01:11:48] 2025-10-12 05:10:57,071 | INFO     | ***************************************
[2025-10-12 01:11:48] 2025-10-12 05:10:57,071 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 01:11:48] 2025-10-12 05:10:57,071 | INFO     | ***************************************
[2025-10-12 01:11:48] 2025-10-12 05:10:57,071 | INFO     | 
[2025-10-12 01:11:48] 2025-10-12 05:10:57,072 | INFO     | architecture information:
[2025-10-12 01:11:48] 2025-10-12 05:10:57,072 | INFO     | executing command: cat /etc/os-release
[2025-10-12 01:11:48] 2025-10-12 05:10:57,088 | INFO     | cat /etc/os-release:
[2025-10-12 01:11:48] NAME="CentOS Linux"
[2025-10-12 01:11:48] VERSION="7 (Core)"
[2025-10-12 01:11:48] ID="centos"
[2025-10-12 01:11:48] ID_LIKE="rhel fedora"
[2025-10-12 01:11:48] VERSION_ID="7"
[2025-10-12 01:11:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 01:11:48] ANSI_COLOR="0;31"
[2025-10-12 01:11:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 01:11:48] HOME_URL="https://www.centos.org/"
[2025-10-12 01:11:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 01:11:48] 
[2025-10-12 01:11:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 01:11:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 01:11:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 01:11:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 01:11:48] 
[2025-10-12 01:11:48] 2025-10-12 05:10:57,088 | INFO     | ***************************************
[2025-10-12 01:11:48] 2025-10-12 05:10:57,591 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 01:11:48] 2025-10-12 05:10:57,607 | INFO     | sufficient remaining disk space (29366419456 B)
[2025-10-12 01:11:48] 2025-10-12 05:10:57,607 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 01:11:48] 2025-10-12 05:10:57,608 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 01:11:48] 2025-10-12 05:10:57,608 | INFO     | update_server=False
[2025-10-12 01:11:48] 2025-10-12 05:10:57,608 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 01:11:48] 2025-10-12 05:10:57,608 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 01:11:48] 2025-10-12 05:10:57,764 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 01:11:48] 2025-10-12 05:10:57,841 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 01:11:48] 2025-10-12 05:10:57,862 | INFO     | all payload control threads have been joined
[2025-10-12 01:11:48] 2025-10-12 05:10:57,888 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 01:11:48] 2025-10-12 05:10:57,888 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 01:11:48] 2025-10-12 05:10:57,889 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 01:11:48] 2025-10-12 05:10:57,889 | INFO     | will abort loop
[2025-10-12 01:11:48] 2025-10-12 05:10:57,998 | INFO     | all data control threads have been joined
[2025-10-12 01:11:48] 2025-10-12 05:10:58,393 | INFO     | all job control threads have been joined
[2025-10-12 01:11:48] 2025-10-12 05:10:58,614 | INFO     | [job] retrieve thread has finished
[2025-10-12 01:11:48] 2025-10-12 05:10:58,614 | INFO     | [job] queue monitor thread has finished
[2025-10-12 01:11:48] 2025-10-12 05:10:58,640 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 01:11:48] 2025-10-12 05:10:58,727 | INFO     | [data] copytool_in thread has finished
[2025-10-12 01:11:48] 2025-10-12 05:10:58,868 | INFO     | [payload] control thread has finished
[2025-10-12 01:11:48] 2025-10-12 05:10:58,890 | INFO     | [job] job monitor thread has finished
[2025-10-12 01:11:48] 2025-10-12 05:10:59,004 | INFO     | [data] control thread has finished
[2025-10-12 01:11:48] 2025-10-12 05:10:59,399 | INFO     | [job] control thread has finished
[2025-10-12 01:11:48] 2025-10-12 05:10:59,456 | INFO     | [payload] failed_post thread has finished
[2025-10-12 01:11:48] 2025-10-12 05:10:59,642 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 01:11:48] 2025-10-12 05:10:59,653 | INFO     | [job] validate thread has finished
[2025-10-12 01:11:48] 2025-10-12 05:10:59,770 | INFO     | [data] copytool_out thread has finished
[2025-10-12 01:11:48] 2025-10-12 05:10:59,994 | INFO     | [payload] validate_post thread has finished
[2025-10-12 01:11:48] 2025-10-12 05:10:59,994 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 01:11:48] 2025-10-12 05:11:01,847 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 01:11:48] 2025-10-12 05:11:08,110 | INFO     | job.realtimelogging is not enabled
[2025-10-12 01:11:48] 2025-10-12 05:11:09,112 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 01:11:48] 2025-10-12 05:11:28,777 | INFO     | PID=16666 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 01:11:48] 2025-10-12 05:11:28,777 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 01:11:48] 2025-10-12 05:11:28,777 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 01:11:48] 2025-10-12 05:11:28,778 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 01:11:48] 2025-10-12 05:11:42,554 | INFO     | [monitor] cgroup control has ended
[2025-10-12 01:11:48] 2025-10-12 05:11:43,397 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140440698500928)>', '<ExcThread(monitor, started 140440078620416)>']
[2025-10-12 01:11:48] 2025-10-12 05:11:43,852 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 01:11:48] 2025-10-12 05:11:43,852 | INFO     | [monitor] control thread has ended
[2025-10-12 01:11:48] 2025-10-12 05:11:48,402 | INFO     | all workflow threads have been joined
[2025-10-12 01:11:48] 2025-10-12 05:11:48,402 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 01:11:48] 2025-10-12 05:11:48,409 | INFO     | traces error code: 0
[2025-10-12 01:11:48] 2025-10-12 05:11:48,410 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 01:11:48] 2025-10-12 05:11:48,502 [wrapper] ==== pilot stdout END ====
[2025-10-12 01:11:48] 2025-10-12 05:11:48,506 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 01:11:48] 2025-10-12 05:11:48,509 [wrapper] pilotpid: 16666
[2025-10-12 01:11:48] 2025-10-12 05:11:48,513 [wrapper] Pilot exit status: 0
[2025-10-12 01:11:48] 2025-10-12 05:11:48,530 [wrapper] pandaids: 6838851898
[2025-10-12 01:11:48] 2025-10-12 05:11:48,578 [wrapper] cleanup supervisor_pilot 26134 16667
[2025-10-12 01:11:48] 2025-10-12 05:11:48,582 [wrapper] Test setup, not cleaning
[2025-10-12 01:11:48] 2025-10-12 05:11:48,586 [wrapper] apfmon messages muted
[2025-10-12 01:11:48] 2025-10-12 05:11:48,590 [wrapper] ==== wrapper stdout END ====
[2025-10-12 01:11:48] 2025-10-12 05:11:48,594 [wrapper] ==== wrapper stderr END ====
[2025-10-12 01:11:48]  *** Error codes and diagnostics ***
[2025-10-12 01:11:48]     "exeErrorCode": 0,
[2025-10-12 01:11:48]     "exeErrorDiag": "",
[2025-10-12 01:11:48]     "pilotErrorCode": 0,
[2025-10-12 01:11:48]     "pilotErrorDiag": "",
[2025-10-12 01:11:48]  *** Listing of results directory ***
[2025-10-12 01:11:48] total 409140
[2025-10-12 01:11:48] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 15:43 pilot3.tar.gz
[2025-10-12 01:11:48] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 15:56 queuedata.json
[2025-10-12 01:11:48] -rwx------ 1 boincer umatlas     36292 Oct 11 15:56 runpilot2-wrapper.sh
[2025-10-12 01:11:48] -rw-r--r-- 1 boincer umatlas       100 Oct 12 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 01:11:48] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 00:00 run_atlas
[2025-10-12 01:11:48] -rw-r--r-- 1 boincer umatlas       105 Oct 12 00:00 job.xml
[2025-10-12 01:11:48] -rw-r--r-- 2 boincer umatlas 222900924 Oct 12 00:00 EVNT.46676267._002572.pool.root.1
[2025-10-12 01:11:48] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 00:00 start_atlas.sh
[2025-10-12 01:11:48] drwxrwx--x 2 boincer umatlas      4096 Oct 12 00:00 shared
[2025-10-12 01:11:48] -rw-r--r-- 2 boincer umatlas    569676 Oct 12 00:00 input.tar.gz
[2025-10-12 01:11:48] -rw-r--r-- 1 boincer umatlas         0 Oct 12 00:00 boinc_lockfile
[2025-10-12 01:11:48] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 00:00 pandaJob.out
[2025-10-12 01:11:48] -rw------- 1 boincer umatlas    975512 Oct 12 00:00 agis_schedconf.cvmfs.json
[2025-10-12 01:11:48] -rw------- 1 boincer umatlas   1560580 Oct 12 00:00 agis_ddmendpoints.agis.ALL.json
[2025-10-12 01:11:48] drwx------ 5 boincer umatlas      4096 Oct 12 00:00 pilot3
[2025-10-12 01:11:48] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 01:02 init_data.xml
[2025-10-12 01:11:48] -rw------- 1 boincer umatlas 190164196 Oct 12 01:10 HITS.46676269._063993.pool.root.1
[2025-10-12 01:11:48] -rw------- 1 boincer umatlas        95 Oct 12 01:10 pilot_heartbeat.json
[2025-10-12 01:11:48] -rw-r--r-- 1 boincer umatlas       529 Oct 12 01:10 boinc_task_state.xml
[2025-10-12 01:11:48] -rw------- 1 boincer umatlas      1049 Oct 12 01:10 memory_monitor_summary.json
[2025-10-12 01:11:48] -rw------- 1 boincer umatlas    376920 Oct 12 01:10 log.46676269._063993.job.log.tgz.1
[2025-10-12 01:11:48] -rw------- 1 boincer umatlas      7847 Oct 12 01:10 heartbeat.json
[2025-10-12 01:11:48] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 01:11 boinc_mmap_file
[2025-10-12 01:11:48] -rw-r--r-- 1 boincer umatlas        27 Oct 12 01:11 wrapper_checkpoint.txt
[2025-10-12 01:11:48] -rw------- 1 boincer umatlas      5004 Oct 12 01:11 pilotlog.txt
[2025-10-12 01:11:48] -rw------- 1 boincer umatlas    615615 Oct 12 01:11 log.46676269._063993.job.log.1
[2025-10-12 01:11:48] -rw------- 1 boincer umatlas       357 Oct 12 01:11 output.list
[2025-10-12 01:11:48] -rw-r--r-- 1 boincer umatlas       620 Oct 12 01:11 runtime_log
[2025-10-12 01:11:48] -rw------- 1 boincer umatlas   1013760 Oct 12 01:11 result.tar.gz
[2025-10-12 01:11:48] -rw-r--r-- 1 boincer umatlas      8700 Oct 12 01:11 runtime_log.err
[2025-10-12 01:11:48] -rw------- 1 boincer umatlas       658 Oct 12 01:11 OmwLDmrsuR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmJUSMDmCQ1Ham.diag
[2025-10-12 01:11:48] -rw-r--r-- 1 boincer umatlas     22350 Oct 12 01:11 stderr.txt
[2025-10-12 01:11:48] HITS file was successfully produced:
[2025-10-12 01:11:48] -rw------- 1 boincer umatlas 190164196 Oct 12 01:10 shared/HITS.pool.root.1
[2025-10-12 01:11:48]  *** Contents of shared directory: ***
[2025-10-12 01:11:48] total 404960
[2025-10-12 01:11:48] -rw-r--r-- 2 boincer umatlas 222900924 Oct 12 00:00 ATLAS.root_0
[2025-10-12 01:11:48] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 00:00 start_atlas.sh
[2025-10-12 01:11:48] -rw-r--r-- 2 boincer umatlas    569676 Oct 12 00:00 input.tar.gz
[2025-10-12 01:11:48] -rw------- 1 boincer umatlas 190164196 Oct 12 01:10 HITS.pool.root.1
[2025-10-12 01:11:48] -rw------- 1 boincer umatlas   1013760 Oct 12 01:11 result.tar.gz
01:11:50 (12991): run_atlas exited; CPU time 45372.166962
01:11:50 (12991): called boinc_finish(0)

</stderr_txt>
]]>

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