Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:41 (2916437): wrapper (7.7.26015): starting
00:01:41 (2916437): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 00:01:41] Arguments: --nthreads 8
[2025-10-12 00:01:41] Threads: 8
[2025-10-12 00:01:41] Checking for CVMFS
[2025-10-12 00:01:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 00:01:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 00:01:43] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 00:01:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 00:01:45] 2.13.2.0 4001654 128738 506856 151606 0 453 22081463 32935936 24425 16776704 25 239201565 99.579 258433280 22370 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 00:01:45] CVMFS is ok
[2025-10-12 00:01:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 00:01:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 00:01:45] Further information can be found at the LHC@home message board.
[2025-10-12 00:01:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 00:01:45] Checking for apptainer binary...
[2025-10-12 00:01:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 00:01:45] Running /usr/bin/apptainer --version
[2025-10-12 00:01:45] apptainer version 1.4.3-1.el9
[2025-10-12 00:01:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 00:01:46] c7-11-13.aglt2.org
[2025-10-12 00:01:46] apptainer works
[2025-10-12 00:01:47] Set ATHENA_PROC_NUMBER=8
[2025-10-12 00:01:47] Set ATHENA_CORE_NUMBER=8
[2025-10-12 00:01:47] Starting ATLAS job with PandaID=6838851973
[2025-10-12 00:01:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 07:03:40]  *** The last 200 lines of the pilot log: ***
[2025-10-12 07:03:40] 2025-10-12 11:02:33,693 | INFO     | fitting pss+swap vs Time
[2025-10-12 07:03:40] 2025-10-12 11:02:33,693 | INFO     | sum of square deviations: 21369848958.087776
[2025-10-12 07:03:40] 2025-10-12 11:02:33,697 | INFO     | sum of deviations: -22425950685.907375
[2025-10-12 07:03:40] 2025-10-12 11:02:33,697 | INFO     | mean x: 1760254388.5317073
[2025-10-12 07:03:40] 2025-10-12 11:02:33,697 | INFO     | mean y: 2352580.33902439
[2025-10-12 07:03:40] 2025-10-12 11:02:33,697 | INFO     | -- intersect: 1849599053.1281543
[2025-10-12 07:03:40] 2025-10-12 11:02:33,697 | INFO     | intersect: 1849599053.1281543
[2025-10-12 07:03:40] 2025-10-12 11:02:33,697 | INFO     | chi2: 2.7568714562435885
[2025-10-12 07:03:40] 2025-10-12 11:02:33,698 | INFO     | sum of square deviations: 20597600695.20007
[2025-10-12 07:03:40] 2025-10-12 11:02:33,701 | INFO     | sum of deviations: 21841977053.777843
[2025-10-12 07:03:40] 2025-10-12 11:02:33,701 | INFO     | mean x: 1760254236.0444446
[2025-10-12 07:03:40] 2025-10-12 11:02:33,702 | INFO     | mean y: 2361284.4567901236
[2025-10-12 07:03:40] 2025-10-12 11:02:33,702 | INFO     | -- intersect: -1864236345.1136065
[2025-10-12 07:03:40] 2025-10-12 11:02:33,702 | INFO     | intersect: -1864236345.1136065
[2025-10-12 07:03:40] 2025-10-12 11:02:33,702 | INFO     | chi2: 1.9294822214983507
[2025-10-12 07:03:40] 2025-10-12 11:02:33,702 | INFO     | current chi2=1.9294822214983507 (change=30.0118902124152 %)
[2025-10-12 07:03:40] 2025-10-12 11:02:33,703 | INFO     | sum of square deviations: 19844189994.677536
[2025-10-12 07:03:40] 2025-10-12 11:02:33,706 | INFO     | sum of deviations: 44355381481.71009
[2025-10-12 07:03:40] 2025-10-12 11:02:33,706 | INFO     | mean x: 1760254083.5575
[2025-10-12 07:03:40] 2025-10-12 11:02:33,706 | INFO     | mean y: 2365831.23
[2025-10-12 07:03:40] 2025-10-12 11:02:33,706 | INFO     | -- intersect: -3932122873.1148014
[2025-10-12 07:03:40] 2025-10-12 11:02:33,706 | INFO     | intersect: -3932122873.1148014
[2025-10-12 07:03:40] 2025-10-12 11:02:33,707 | INFO     | chi2: 1.7759817268511429
[2025-10-12 07:03:40] 2025-10-12 11:02:33,707 | INFO     | current chi2=1.7759817268511429 (change=7.955527806211457 %)
[2025-10-12 07:03:40] 2025-10-12 11:02:33,707 | INFO     | right removable region: 399
[2025-10-12 07:03:40] 2025-10-12 11:02:33,707 | INFO     | sum of square deviations: 20597342665.200043
[2025-10-12 07:03:40] 2025-10-12 11:02:33,710 | INFO     | sum of deviations: -89764966445.46667
[2025-10-12 07:03:40] 2025-10-12 11:02:33,711 | INFO     | mean x: 1760254541.0444446
[2025-10-12 07:03:40] 2025-10-12 11:02:33,711 | INFO     | mean y: 2365813.9703703704
[2025-10-12 07:03:40] 2025-10-12 11:02:33,711 | INFO     | -- intersect: 7673704412.385648
[2025-10-12 07:03:40] 2025-10-12 11:02:33,711 | INFO     | intersect: 7673704412.385648
[2025-10-12 07:03:40] 2025-10-12 11:02:33,711 | INFO     | chi2: 1.1546026449037796
[2025-10-12 07:03:40] 2025-10-12 11:02:33,711 | INFO     | current chi2=1.1546026449037796 (change=58.11909756296731 %)
[2025-10-12 07:03:40] 2025-10-12 11:02:33,712 | INFO     | sum of square deviations: 19843698518.79002
[2025-10-12 07:03:40] 2025-10-12 11:02:33,715 | INFO     | sum of deviations: -99678588018.05498
[2025-10-12 07:03:40] 2025-10-12 11:02:33,715 | INFO     | mean x: 1760254693.555
[2025-10-12 07:03:40] 2025-10-12 11:02:33,715 | INFO     | mean y: 2367809.7525
[2025-10-12 07:03:40] 2025-10-12 11:02:33,715 | INFO     | -- intersect: 8844454492.311876
[2025-10-12 07:03:40] 2025-10-12 11:02:33,715 | INFO     | intersect: 8844454492.311876
[2025-10-12 07:03:40] 2025-10-12 11:02:33,716 | INFO     | chi2: 1.101626592226745
[2025-10-12 07:03:40] 2025-10-12 11:02:33,716 | INFO     | current chi2=1.101626592226745 (change=4.588249724774316 %)
[2025-10-12 07:03:40] 2025-10-12 11:02:33,716 | INFO     | left removable region: 20
[2025-10-12 07:03:40] 2025-10-12 11:02:33,716 | INFO     | sum of square deviations: 16879409108.986858
[2025-10-12 07:03:40] 2025-10-12 11:02:33,719 | INFO     | sum of deviations: -35702362573.907646
[2025-10-12 07:03:40] 2025-10-12 11:02:33,719 | INFO     | mean x: 1760254663.1029024
[2025-10-12 07:03:40] 2025-10-12 11:02:33,719 | INFO     | mean y: 2383709.279683377
[2025-10-12 07:03:40] 2025-10-12 11:02:33,719 | INFO     | -- intersect: 3725573887.2493434
[2025-10-12 07:03:40] 2025-10-12 11:02:33,722 | INFO     | intersect: 3725573887.2493434
[2025-10-12 07:03:40] 2025-10-12 11:02:33,722 | INFO     | chi2: 0.10746614403114098
[2025-10-12 07:03:40] 2025-10-12 11:02:33,722 | INFO     | -- intersect: 3725573887.2493434
[2025-10-12 07:03:40] 2025-10-12 11:02:33,722 | INFO     | current memory leak: -2.12 B/s (using 379 data points, chi2=0.11)
[2025-10-12 07:03:40] 2025-10-12 11:02:33,723 | INFO     | could have reported an average CPU frequency of 3269 MHz (17 samples)
[2025-10-12 07:03:40] 2025-10-12 11:02:33,724 | INFO     | ..............................
[2025-10-12 07:03:40] 2025-10-12 11:02:33,724 | INFO     | . Timing measurements:
[2025-10-12 07:03:40] 2025-10-12 11:02:33,724 | INFO     | . get job = 0 s
[2025-10-12 07:03:40] 2025-10-12 11:02:33,724 | INFO     | . initial setup = 5 s
[2025-10-12 07:03:40] 2025-10-12 11:02:33,724 | INFO     | . payload setup = 27 s
[2025-10-12 07:03:40] 2025-10-12 11:02:33,724 | INFO     | . stage-in = 0 s
[2025-10-12 07:03:40] 2025-10-12 11:02:33,724 | INFO     | . payload execution = 25022 s
[2025-10-12 07:03:40] 2025-10-12 11:02:33,724 | INFO     | . stage-out = 4 s
[2025-10-12 07:03:40] 2025-10-12 11:02:33,724 | INFO     | . log creation = 0 s
[2025-10-12 07:03:40] 2025-10-12 11:02:33,724 | INFO     | ..............................
[2025-10-12 07:03:40] 2025-10-12 11:02:33,840 | INFO     | 
[2025-10-12 07:03:40] 2025-10-12 11:02:33,841 | INFO     | job summary report
[2025-10-12 07:03:40] 2025-10-12 11:02:33,841 | INFO     | --------------------------------------------------
[2025-10-12 07:03:40] 2025-10-12 11:02:33,841 | INFO     | PanDA job id: 6838851973
[2025-10-12 07:03:40] 2025-10-12 11:02:33,841 | INFO     | task id: 46676269
[2025-10-12 07:03:40] 2025-10-12 11:02:33,841 | INFO     | errors: (none)
[2025-10-12 07:03:40] 2025-10-12 11:02:33,841 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 07:03:40] 2025-10-12 11:02:33,841 | INFO     | pilot state: finished 
[2025-10-12 07:03:40] 2025-10-12 11:02:33,841 | INFO     | transexitcode: 0
[2025-10-12 07:03:40] 2025-10-12 11:02:33,841 | INFO     | exeerrorcode: 0
[2025-10-12 07:03:40] 2025-10-12 11:02:33,841 | INFO     | exeerrordiag: 
[2025-10-12 07:03:40] 2025-10-12 11:02:33,841 | INFO     | exitcode: 0
[2025-10-12 07:03:40] 2025-10-12 11:02:33,841 | INFO     | exitmsg: OK
[2025-10-12 07:03:40] 2025-10-12 11:02:33,841 | INFO     | cpuconsumptiontime: 31985 s
[2025-10-12 07:03:40] 2025-10-12 11:02:33,841 | INFO     | nevents: 400
[2025-10-12 07:03:40] 2025-10-12 11:02:33,842 | INFO     | neventsw: 0
[2025-10-12 07:03:40] 2025-10-12 11:02:33,842 | INFO     | pid: 2948300
[2025-10-12 07:03:40] 2025-10-12 11:02:33,842 | INFO     | pgrp: 2948300
[2025-10-12 07:03:40] 2025-10-12 11:02:33,842 | INFO     | corecount: 8
[2025-10-12 07:03:40] 2025-10-12 11:02:33,842 | INFO     | event service: False
[2025-10-12 07:03:40] 2025-10-12 11:02:33,842 | INFO     | sizes: {0: 2348686, 1: 2348885, 12: 2348885, 18: 2349175, 23: 2349203, 25054: 2384662, 25061: 2393660, 25062: 2393716, 25089: 2393974}
[2025-10-12 07:03:40] 2025-10-12 11:02:33,842 | INFO     | --------------------------------------------------
[2025-10-12 07:03:40] 2025-10-12 11:02:33,842 | INFO     | 
[2025-10-12 07:03:40] 2025-10-12 11:02:33,842 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-10-12 07:03:40] 2025-10-12 11:02:34,070 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 07:03:40] 2025-10-12 11:02:34,070 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 07:03:40] 2025-10-12 11:02:34,070 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 07:03:40] 2025-10-12 11:02:34,070 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 07:03:40] 2025-10-12 11:02:34,070 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 07:03:40] 2025-10-12 11:02:34,070 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 07:03:40] 2025-10-12 11:02:34,070 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 07:03:40] 2025-10-12 11:02:34,070 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 07:03:40] 2025-10-12 11:02:34,070 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 07:03:40] 2025-10-12 11:02:34,071 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 07:03:40] 2025-10-12 11:02:34,071 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 07:03:40] 2025-10-12 11:02:34,071 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 07:03:40] 2025-10-12 11:02:34,071 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 07:03:40] 2025-10-12 11:02:34,071 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 07:03:40] 2025-10-12 11:02:34,071 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 07:03:40] 2025-10-12 11:02:34,071 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 07:03:40] 2025-10-12 11:02:34,071 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 07:03:40] 2025-10-12 11:02:34,071 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 07:03:40] 2025-10-12 11:02:34,071 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 07:03:40] 2025-10-12 11:02:34,071 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 07:03:40] 2025-10-12 11:02:34,071 | INFO     | job 6838851973 has completed (purged errors)
[2025-10-12 07:03:40] 2025-10-12 11:02:34,071 | INFO     | overall cleanup function is called
[2025-10-12 07:03:40] 2025-10-12 11:02:35,092 | INFO     | --- collectZombieJob: --- 10, [2948300]
[2025-10-12 07:03:40] 2025-10-12 11:02:35,092 | INFO     | zombie collector waiting for pid 2948300
[2025-10-12 07:03:40] 2025-10-12 11:02:35,092 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 07:03:40] 2025-10-12 11:02:35,092 | INFO     | collected zombie processes
[2025-10-12 07:03:40] 2025-10-12 11:02:35,092 | INFO     | will attempt to kill all subprocesses of pid=2948300
[2025-10-12 07:03:40] 2025-10-12 11:02:35,953 | INFO     | process IDs to be killed: [2948300] (in reverse order)
[2025-10-12 07:03:40] 2025-10-12 11:02:36,129 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 07:03:40] 2025-10-12 11:02:36,129 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 07:03:40] 2025-10-12 11:02:36,168 | INFO     | did not find any defunct processes belonging to 2948300
[2025-10-12 07:03:40] 2025-10-12 11:02:36,184 | INFO     | did not find any defunct processes belonging to 2948300
[2025-10-12 07:03:40] 2025-10-12 11:02:36,185 | INFO     | ready for new job
[2025-10-12 07:03:40] 2025-10-12 11:02:36,185 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 07:03:40] 2025-10-12 11:02:36,188 | INFO     | ***************************************
[2025-10-12 07:03:40] 2025-10-12 11:02:36,188 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 07:03:40] 2025-10-12 11:02:36,188 | INFO     | ***************************************
[2025-10-12 07:03:40] 2025-10-12 11:02:36,188 | INFO     | 
[2025-10-12 07:03:40] 2025-10-12 11:02:36,213 | INFO     | architecture information:
[2025-10-12 07:03:40] 2025-10-12 11:02:36,218 | INFO     | executing command: cat /etc/os-release
[2025-10-12 07:03:40] 2025-10-12 11:02:36,260 | INFO     | cat /etc/os-release:
[2025-10-12 07:03:40] NAME="CentOS Linux"
[2025-10-12 07:03:40] VERSION="7 (Core)"
[2025-10-12 07:03:40] ID="centos"
[2025-10-12 07:03:40] ID_LIKE="rhel fedora"
[2025-10-12 07:03:40] VERSION_ID="7"
[2025-10-12 07:03:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 07:03:40] ANSI_COLOR="0;31"
[2025-10-12 07:03:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 07:03:40] HOME_URL="https://www.centos.org/"
[2025-10-12 07:03:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 07:03:40] 
[2025-10-12 07:03:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 07:03:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 07:03:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 07:03:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 07:03:40] 
[2025-10-12 07:03:40] 2025-10-12 11:02:36,260 | INFO     | ***************************************
[2025-10-12 07:03:40] 2025-10-12 11:02:36,769 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-10-12 07:03:40] 2025-10-12 11:02:36,822 | INFO     | sufficient remaining disk space (94790221824 B)
[2025-10-12 07:03:40] 2025-10-12 11:02:36,823 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 07:03:40] 2025-10-12 11:02:36,823 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 07:03:40] 2025-10-12 11:02:36,823 | INFO     | update_server=False
[2025-10-12 07:03:40] 2025-10-12 11:02:36,823 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 07:03:40] 2025-10-12 11:02:36,825 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 07:03:40] 2025-10-12 11:02:36,842 | INFO     | all payload control threads have been joined
[2025-10-12 07:03:40] 2025-10-12 11:02:36,944 | INFO     | all data control threads have been joined
[2025-10-12 07:03:40] 2025-10-12 11:02:37,316 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 07:03:40] 2025-10-12 11:02:37,316 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 07:03:40] 2025-10-12 11:02:37,316 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 07:03:40] 2025-10-12 11:02:37,316 | INFO     | will abort loop
[2025-10-12 07:03:40] 2025-10-12 11:02:37,731 | INFO     | all job control threads have been joined
[2025-10-12 07:03:40] 2025-10-12 11:02:37,831 | INFO     | [job] retrieve thread has finished
[2025-10-12 07:03:40] 2025-10-12 11:02:37,848 | INFO     | [payload] control thread has finished
[2025-10-12 07:03:40] 2025-10-12 11:02:37,948 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 07:03:40] 2025-10-12 11:02:37,956 | INFO     | [data] control thread has finished
[2025-10-12 07:03:40] 2025-10-12 11:02:38,208 | INFO     | [payload] failed_post thread has finished
[2025-10-12 07:03:40] 2025-10-12 11:02:38,322 | INFO     | [job] job monitor thread has finished
[2025-10-12 07:03:40] 2025-10-12 11:02:38,388 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 07:03:40] 2025-10-12 11:02:38,543 | INFO     | [job] validate thread has finished
[2025-10-12 07:03:40] 2025-10-12 11:02:38,737 | INFO     | [job] control thread has finished
[2025-10-12 07:03:40] 2025-10-12 11:02:38,837 | INFO     | [data] copytool_out thread has finished
[2025-10-12 07:03:40] 2025-10-12 11:02:38,889 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 07:03:40] 2025-10-12 11:02:38,950 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 07:03:40] 2025-10-12 11:02:38,990 | INFO     | [data] copytool_in thread has finished
[2025-10-12 07:03:40] 2025-10-12 11:02:39,201 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 07:03:40] 2025-10-12 11:02:39,392 | INFO     | [payload] validate_post thread has finished
[2025-10-12 07:03:40] 2025-10-12 11:02:39,751 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 07:03:40] 2025-10-12 11:02:39,894 | INFO     | [job] queue monitor thread has finished
[2025-10-12 07:03:40] 2025-10-12 11:02:43,777 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 07:03:40] 2025-10-12 11:03:08,954 | INFO     | PID=2927665 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 07:03:40] 2025-10-12 11:03:08,955 | INFO     | .. there are 31 such processes running
[2025-10-12 07:03:40] 2025-10-12 11:03:08,955 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 07:03:40] 2025-10-12 11:03:08,955 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 07:03:40] 2025-10-12 11:03:08,955 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 07:03:40] 2025-10-12 11:03:33,721 | INFO     | [monitor] cgroup control has ended
[2025-10-12 07:03:40] 2025-10-12 11:03:34,009 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139773190518592)>', '<ExcThread(monitor, started 139772848756480)>']
[2025-10-12 07:03:40] 2025-10-12 11:03:34,132 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 07:03:40] 2025-10-12 11:03:34,132 | INFO     | [monitor] control thread has ended
[2025-10-12 07:03:40] 2025-10-12 11:03:38,136 [wrapper] supervise_pilot (15 min periods counter: 29)
[2025-10-12 07:03:40] 2025-10-12 11:03:39,034 | INFO     | all workflow threads have been joined
[2025-10-12 07:03:40] 2025-10-12 11:03:39,058 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 07:03:40] 2025-10-12 11:03:39,058 | INFO     | traces error code: 0
[2025-10-12 07:03:40] 2025-10-12 11:03:39,059 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 07:03:40] 2025-10-12 11:03:39,613 [wrapper] ==== pilot stdout END ====
[2025-10-12 07:03:40] 2025-10-12 11:03:39,616 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 07:03:40] 2025-10-12 11:03:39,619 [wrapper] pilotpid: 2927665
[2025-10-12 07:03:40] 2025-10-12 11:03:39,621 [wrapper] Pilot exit status: 0
[2025-10-12 07:03:40] 2025-10-12 11:03:39,714 [wrapper] pandaids: 6838851973
[2025-10-12 07:03:40] 2025-10-12 11:03:39,836 [wrapper] cleanup supervisor_pilot  106068 2927666
[2025-10-12 07:03:40] 2025-10-12 11:03:39,841 [wrapper] Test setup, not cleaning
[2025-10-12 07:03:40] 2025-10-12 11:03:39,844 [wrapper] apfmon messages muted
[2025-10-12 07:03:40] 2025-10-12 11:03:39,848 [wrapper] ==== wrapper stdout END ====
[2025-10-12 07:03:40] 2025-10-12 11:03:39,851 [wrapper] ==== wrapper stderr END ====
[2025-10-12 07:03:40]  *** Error codes and diagnostics ***
[2025-10-12 07:03:40]     "exeErrorCode": 0,
[2025-10-12 07:03:40]     "exeErrorDiag": "",
[2025-10-12 07:03:40]     "pilotErrorCode": 0,
[2025-10-12 07:03:40]     "pilotErrorDiag": "",
[2025-10-12 07:03:40]  *** Listing of results directory ***
[2025-10-12 07:03:40] total 411116
[2025-10-12 07:03:40] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 15:58 queuedata.json
[2025-10-12 07:03:40] -rwx------. 1 boincer umatlas     36292 Oct 11 15:59 runpilot2-wrapper.sh
[2025-10-12 07:03:40] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 15:59 pilot3.tar.gz
[2025-10-12 07:03:40] -rw-r--r--. 1 boincer umatlas       100 Oct 12 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 07:03:40] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 00:01 run_atlas
[2025-10-12 07:03:40] -rw-r--r--. 1 boincer umatlas       105 Oct 12 00:01 job.xml
[2025-10-12 07:03:40] -rw-r--r--. 2 boincer umatlas 220153524 Oct 12 00:01 EVNT.46676267._002575.pool.root.1
[2025-10-12 07:03:40] -rw-r--r--. 2 boincer umatlas    569674 Oct 12 00:01 input.tar.gz
[2025-10-12 07:03:40] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 00:01 start_atlas.sh
[2025-10-12 07:03:40] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 00:01 shared
[2025-10-12 07:03:40] -rw-r--r--. 1 boincer umatlas         0 Oct 12 00:01 boinc_lockfile
[2025-10-12 07:03:40] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 00:01 pandaJob.out
[2025-10-12 07:03:40] -rw-------. 1 boincer umatlas    975512 Oct 12 00:03 agis_schedconf.cvmfs.json
[2025-10-12 07:03:40] drwx------. 5 boincer umatlas      4096 Oct 12 00:03 pilot3
[2025-10-12 07:03:40] -rw-r--r--. 1 boincer umatlas      6900 Oct 12 06:56 init_data.xml
[2025-10-12 07:03:40] -rw-------. 1 boincer umatlas 189896376 Oct 12 07:00 HITS.46676269._064068.pool.root.1
[2025-10-12 07:03:40] -rw-r--r--. 1 boincer umatlas       531 Oct 12 07:00 boinc_task_state.xml
[2025-10-12 07:03:40] -rw-------. 1 boincer umatlas      1042 Oct 12 07:01 memory_monitor_summary.json
[2025-10-12 07:03:40] -rw-------. 1 boincer umatlas   1560580 Oct 12 07:02 agis_ddmendpoints.agis.ALL.json
[2025-10-12 07:03:40] -rw-------. 1 boincer umatlas    578536 Oct 12 07:02 log.46676269._064068.job.log.tgz.1
[2025-10-12 07:03:40] -rw-------. 1 boincer umatlas        95 Oct 12 07:02 pilot_heartbeat.json
[2025-10-12 07:03:40] -rw-------. 1 boincer umatlas      7801 Oct 12 07:02 heartbeat.json
[2025-10-12 07:03:40] -rw-------. 1 boincer umatlas      5010 Oct 12 07:03 pilotlog.txt
[2025-10-12 07:03:40] -rw-r--r--. 1 boincer umatlas        28 Oct 12 07:03 wrapper_checkpoint.txt
[2025-10-12 07:03:40] -rw-------. 1 boincer umatlas   2935517 Oct 12 07:03 log.46676269._064068.job.log.1
[2025-10-12 07:03:40] -rw-------. 1 boincer umatlas       357 Oct 12 07:03 output.list
[2025-10-12 07:03:40] -rw-r--r--. 1 boincer umatlas       620 Oct 12 07:03 runtime_log
[2025-10-12 07:03:40] -rw-------. 1 boincer umatlas   3532800 Oct 12 07:03 result.tar.gz
[2025-10-12 07:03:40] -rw-r--r--. 1 boincer umatlas      8704 Oct 12 07:03 runtime_log.err
[2025-10-12 07:03:40] -rw-------. 1 boincer umatlas       660 Oct 12 07:03 bWcMDmKvuR8n9Rq4apOajLDm4fhM0noT9bVof3QYDm7USMDmiM3lxm.diag
[2025-10-12 07:03:40] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 07:03 boinc_mmap_file
[2025-10-12 07:03:40] -rw-r--r--. 1 boincer umatlas     21017 Oct 12 07:03 stderr.txt
[2025-10-12 07:03:40] HITS file was successfully produced:
[2025-10-12 07:03:40] -rw-------. 1 boincer umatlas 189896376 Oct 12 07:00 shared/HITS.pool.root.1
[2025-10-12 07:03:40]  *** Contents of shared directory: ***
[2025-10-12 07:03:40] total 404476
[2025-10-12 07:03:40] -rw-r--r--. 2 boincer umatlas 220153524 Oct 12 00:01 ATLAS.root_0
[2025-10-12 07:03:40] -rw-r--r--. 2 boincer umatlas    569674 Oct 12 00:01 input.tar.gz
[2025-10-12 07:03:40] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 00:01 start_atlas.sh
[2025-10-12 07:03:40] -rw-------. 1 boincer umatlas 189896376 Oct 12 07:00 HITS.pool.root.1
[2025-10-12 07:03:40] -rw-------. 1 boincer umatlas   3532800 Oct 12 07:03 result.tar.gz
07:03:41 (2916437): run_atlas exited; CPU time 32382.051254
07:03:41 (2916437): called boinc_finish(0)

</stderr_txt>
]]>

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