Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:43:52 (7067): wrapper (7.7.26015): starting
23:43:52 (7067): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 23:43:52] Arguments: --nthreads 12
[2025-10-11 23:43:52] Threads: 12
[2025-10-11 23:43:52] Checking for CVMFS
[2025-10-11 23:43:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 23:43:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 23:43:52] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 23:43:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 23:43:53] 2.11.2.0 2916 222311 99040 151606 1 56 18755730 20275201 1 130560 1 107703524 99.984 13393455 12493 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 23:43:53] CVMFS is ok
[2025-10-11 23:43:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 23:43:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 23:43:53] Further information can be found at the LHC@home message board.
[2025-10-11 23:43:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 23:43:53] Checking for apptainer binary...
[2025-10-11 23:43:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 23:43:53] Running /usr/bin/apptainer --version
[2025-10-11 23:43:53] apptainer version 1.3.2-1.el7
[2025-10-11 23:43:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 23:43:54] c-205-23.aglt2.org
[2025-10-11 23:43:54] apptainer works
[2025-10-11 23:43:54] Set ATHENA_PROC_NUMBER=12
[2025-10-11 23:43:54] Set ATHENA_CORE_NUMBER=12
[2025-10-11 23:43:54] Starting ATLAS job with PandaID=6838989711
[2025-10-11 23:43:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 00:57:21]  *** The last 200 lines of the pilot log: ***
[2025-10-12 00:57:21]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6838989711/log.46676269._065619.job.log.tgz.1
[2025-10-12 00:57:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3d/e1/log.46676269._065619.job.log.tgz.1
[2025-10-12 00:57:21]  workdir=None
[2025-10-12 00:57:21] ]
[2025-10-12 00:57:21] 2025-10-12 04:56:10,797 | INFO     | transferring file log.46676269._065619.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6838989711/log.46676269._065619.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 00:57:21] 2025-10-12 04:56:10,797 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6838989711/log.46676269._065619.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._065619.job
[2025-10-12 00:57:21] 2025-10-12 04:56:10,819 | INFO     | adding to output.list: log.46676269._065619.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3d/e1/log.46676269._065619.job.log.tg
[2025-10-12 00:57:21] 2025-10-12 04:56:10,820 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 00:57:21] 2025-10-12 04:56:10,820 | INFO     | summary of transferred files:
[2025-10-12 00:57:21] 2025-10-12 04:56:10,821 | INFO     |  -- lfn=log.46676269._065619.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 00:57:21] 2025-10-12 04:56:10,821 | INFO     | stage-out finished correctly
[2025-10-12 00:57:21] 2025-10-12 04:56:12,118 | INFO     | monitor loop #321: job 0:6838989711 is in state 'finished'
[2025-10-12 00:57:21] 2025-10-12 04:56:12,118 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 00:57:21] 2025-10-12 04:56:12,219 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 00:57:21] 2025-10-12 04:56:12,567 | INFO     | time since job start (4323s) is within the limit (172800.0s)
[2025-10-12 00:57:21] 2025-10-12 04:56:14,572 | INFO     | time since job start (4325s) is within the limit (172800.0s)
[2025-10-12 00:57:21] 2025-10-12 04:56:14,621 | INFO     | monitor loop #322: job 0:6838989711 is in state 'finished'
[2025-10-12 00:57:21] 2025-10-12 04:56:14,621 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 00:57:21] 2025-10-12 04:56:15,299 | INFO     | job 6838989711 has state=finished
[2025-10-12 00:57:21] 2025-10-12 04:56:15,300 | INFO     | preparing for final server update for job 6838989711 in state='finished'
[2025-10-12 00:57:21] 2025-10-12 04:56:15,300 | INFO     | this job has now completed (state=finished)
[2025-10-12 00:57:21] 2025-10-12 04:56:15,301 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 00:57:21] 2025-10-12 04:56:15,301 | INFO     | log transfer has been attempted: DONE
[2025-10-12 00:57:21] 2025-10-12 04:56:15,301 | INFO     | job 6838989711 has finished - writing final server update
[2025-10-12 00:57:21] 2025-10-12 04:56:15,301 | INFO     | total number of processed events: 400 (read)
[2025-10-12 00:57:21] 2025-10-12 04:56:15,302 | INFO     | executing command: lscpu
[2025-10-12 00:57:21] 2025-10-12 04:56:15,328 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 00:57:21] 2025-10-12 04:56:15,694 | INFO     | PID=12539 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 00:57:21] 2025-10-12 04:56:16,695 | INFO     | time since job start (4327s) is within the limit (172800.0s)
[2025-10-12 00:57:21] 2025-10-12 04:56:17,125 | INFO     | monitor loop #323: job 0:6838989711 is in state 'finished'
[2025-10-12 00:57:21] 2025-10-12 04:56:17,125 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 00:57:21] 2025-10-12 04:56:18,700 | INFO     | time since job start (4329s) is within the limit (172800.0s)
[2025-10-12 00:57:21] 2025-10-12 04:56:19,628 | INFO     | monitor loop #324: job 0:6838989711 is in state 'finished'
[2025-10-12 00:57:21] 2025-10-12 04:56:19,628 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 00:57:21] 2025-10-12 04:56:19,985 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 00:57:21] 2025-10-12 04:56:19,989 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-12 00:57:21] 2025-10-12 04:56:19,991 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6838989711/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 00:57:21] 2025-10-12 04:56:19,991 | INFO     | extracted standard info from prmon json
[2025-10-12 00:57:21] 2025-10-12 04:56:19,991 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 00:57:21] 2025-10-12 04:56:19,992 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 00:57:21] 2025-10-12 04:56:19,992 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 00:57:21] 2025-10-12 04:56:19,992 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 00:57:21] 2025-10-12 04:56:19,993 | INFO     | fitting pss+swap vs Time
[2025-10-12 00:57:21] 2025-10-12 04:56:19,994 | INFO     | sum of square deviations: 81266640.0
[2025-10-12 00:57:21] 2025-10-12 04:56:19,994 | INFO     | sum of deviations: -5738800639.0
[2025-10-12 00:57:21] 2025-10-12 04:56:19,994 | INFO     | mean x: 1760242904.5
[2025-10-12 00:57:21] 2025-10-12 04:56:19,994 | INFO     | mean y: 2740634.34375
[2025-10-12 00:57:21] 2025-10-12 04:56:19,994 | INFO     | -- intersect: 124305690838.0167
[2025-10-12 00:57:21] 2025-10-12 04:56:19,994 | INFO     | intersect: 124305690838.0167
[2025-10-12 00:57:21] 2025-10-12 04:56:19,995 | INFO     | chi2: 0.054953874762837154
[2025-10-12 00:57:21] 2025-10-12 04:56:19,995 | INFO     | -- intersect: 124305690838.0167
[2025-10-12 00:57:21] 2025-10-12 04:56:19,995 | INFO     | current memory leak: -70.62 B/s (using 64 data points, chi2=0.05)
[2025-10-12 00:57:21] 2025-10-12 04:56:19,995 | INFO     | could have reported an average CPU frequency of 2036 MHz (6 samples)
[2025-10-12 00:57:21] 2025-10-12 04:56:19,995 | INFO     | ..............................
[2025-10-12 00:57:21] 2025-10-12 04:56:19,995 | INFO     | . Timing measurements:
[2025-10-12 00:57:21] 2025-10-12 04:56:19,995 | INFO     | . get job = 0 s
[2025-10-12 00:57:21] 2025-10-12 04:56:19,996 | INFO     | . initial setup = 2 s
[2025-10-12 00:57:21] 2025-10-12 04:56:19,996 | INFO     | . payload setup = 7 s
[2025-10-12 00:57:21] 2025-10-12 04:56:19,996 | INFO     | . stage-in = 0 s
[2025-10-12 00:57:21] 2025-10-12 04:56:19,996 | INFO     | . payload execution = 4293 s
[2025-10-12 00:57:21] 2025-10-12 04:56:19,996 | INFO     | . stage-out = 0 s
[2025-10-12 00:57:21] 2025-10-12 04:56:19,996 | INFO     | . log creation = 0 s
[2025-10-12 00:57:21] 2025-10-12 04:56:19,996 | INFO     | ..............................
[2025-10-12 00:57:21] 2025-10-12 04:56:20,079 | INFO     | 
[2025-10-12 00:57:21] 2025-10-12 04:56:20,080 | INFO     | job summary report
[2025-10-12 00:57:21] 2025-10-12 04:56:20,080 | INFO     | --------------------------------------------------
[2025-10-12 00:57:21] 2025-10-12 04:56:20,080 | INFO     | PanDA job id: 6838989711
[2025-10-12 00:57:21] 2025-10-12 04:56:20,080 | INFO     | task id: 46676269
[2025-10-12 00:57:21] 2025-10-12 04:56:20,080 | INFO     | errors: (none)
[2025-10-12 00:57:21] 2025-10-12 04:56:20,080 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 00:57:21] 2025-10-12 04:56:20,081 | INFO     | pilot state: finished 
[2025-10-12 00:57:21] 2025-10-12 04:56:20,081 | INFO     | transexitcode: 0
[2025-10-12 00:57:21] 2025-10-12 04:56:20,081 | INFO     | exeerrorcode: 0
[2025-10-12 00:57:21] 2025-10-12 04:56:20,081 | INFO     | exeerrordiag: 
[2025-10-12 00:57:21] 2025-10-12 04:56:20,081 | INFO     | exitcode: 0
[2025-10-12 00:57:21] 2025-10-12 04:56:20,081 | INFO     | exitmsg: OK
[2025-10-12 00:57:21] 2025-10-12 04:56:20,082 | INFO     | cpuconsumptiontime: 47574 s
[2025-10-12 00:57:21] 2025-10-12 04:56:20,082 | INFO     | nevents: 400
[2025-10-12 00:57:21] 2025-10-12 04:56:20,082 | INFO     | neventsw: 0
[2025-10-12 00:57:21] 2025-10-12 04:56:20,082 | INFO     | pid: 18973
[2025-10-12 00:57:21] 2025-10-12 04:56:20,082 | INFO     | pgrp: 18973
[2025-10-12 00:57:21] 2025-10-12 04:56:20,082 | INFO     | corecount: 12
[2025-10-12 00:57:21] 2025-10-12 04:56:20,082 | INFO     | event service: False
[2025-10-12 00:57:21] 2025-10-12 04:56:20,083 | INFO     | sizes: {0: 2348029, 1: 2348885, 6: 2349147, 12: 2349175, 4304: 2375224, 4305: 2384222, 4306: 2384406, 4314: 2384600}
[2025-10-12 00:57:21] 2025-10-12 04:56:20,083 | INFO     | --------------------------------------------------
[2025-10-12 00:57:21] 2025-10-12 04:56:20,083 | INFO     | 
[2025-10-12 00:57:21] 2025-10-12 04:56:20,083 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 00:57:21] 2025-10-12 04:56:20,105 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 00:57:21] 2025-10-12 04:56:20,105 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 00:57:21] 2025-10-12 04:56:20,105 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 00:57:21] 2025-10-12 04:56:20,105 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 00:57:21] 2025-10-12 04:56:20,106 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 00:57:21] 2025-10-12 04:56:20,106 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 00:57:21] 2025-10-12 04:56:20,106 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 00:57:21] 2025-10-12 04:56:20,106 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 00:57:21] 2025-10-12 04:56:20,106 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 00:57:21] 2025-10-12 04:56:20,106 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 00:57:21] 2025-10-12 04:56:20,107 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 00:57:21] 2025-10-12 04:56:20,107 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 00:57:21] 2025-10-12 04:56:20,107 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 00:57:21] 2025-10-12 04:56:20,107 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 00:57:21] 2025-10-12 04:56:20,107 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 00:57:21] 2025-10-12 04:56:20,107 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 00:57:21] 2025-10-12 04:56:20,108 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 00:57:21] 2025-10-12 04:56:20,108 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 00:57:21] 2025-10-12 04:56:20,108 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 00:57:21] 2025-10-12 04:56:20,108 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 00:57:21] 2025-10-12 04:56:20,108 | INFO     | job 6838989711 has completed (purged errors)
[2025-10-12 00:57:21] 2025-10-12 04:56:20,109 | INFO     | overall cleanup function is called
[2025-10-12 00:57:21] 2025-10-12 04:56:21,116 | INFO     | --- collectZombieJob: --- 10, [18973]
[2025-10-12 00:57:21] 2025-10-12 04:56:21,117 | INFO     | zombie collector waiting for pid 18973
[2025-10-12 00:57:21] 2025-10-12 04:56:21,117 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 00:57:21] 2025-10-12 04:56:21,117 | INFO     | collected zombie processes
[2025-10-12 00:57:21] 2025-10-12 04:56:21,117 | INFO     | will attempt to kill all subprocesses of pid=18973
[2025-10-12 00:57:21] 2025-10-12 04:56:21,210 | INFO     | process IDs to be killed: [18973] (in reverse order)
[2025-10-12 00:57:21] 2025-10-12 04:56:21,260 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 00:57:21] 2025-10-12 04:56:21,261 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 00:57:21] 2025-10-12 04:56:21,264 | INFO     | did not find any defunct processes belonging to 18973
[2025-10-12 00:57:21] 2025-10-12 04:56:21,268 | INFO     | did not find any defunct processes belonging to 18973
[2025-10-12 00:57:21] 2025-10-12 04:56:21,268 | INFO     | ready for new job
[2025-10-12 00:57:21] 2025-10-12 04:56:21,268 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 00:57:21] 2025-10-12 04:56:21,270 | INFO     | ***************************************
[2025-10-12 00:57:21] 2025-10-12 04:56:21,270 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 00:57:21] 2025-10-12 04:56:21,270 | INFO     | ***************************************
[2025-10-12 00:57:21] 2025-10-12 04:56:21,270 | INFO     | 
[2025-10-12 00:57:21] 2025-10-12 04:56:21,271 | INFO     | architecture information:
[2025-10-12 00:57:21] 2025-10-12 04:56:21,271 | INFO     | executing command: cat /etc/os-release
[2025-10-12 00:57:21] 2025-10-12 04:56:21,285 | INFO     | cat /etc/os-release:
[2025-10-12 00:57:21] NAME="CentOS Linux"
[2025-10-12 00:57:21] VERSION="7 (Core)"
[2025-10-12 00:57:21] ID="centos"
[2025-10-12 00:57:21] ID_LIKE="rhel fedora"
[2025-10-12 00:57:21] VERSION_ID="7"
[2025-10-12 00:57:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 00:57:21] ANSI_COLOR="0;31"
[2025-10-12 00:57:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 00:57:21] HOME_URL="https://www.centos.org/"
[2025-10-12 00:57:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 00:57:21] 
[2025-10-12 00:57:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 00:57:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 00:57:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 00:57:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 00:57:21] 
[2025-10-12 00:57:21] 2025-10-12 04:56:21,286 | INFO     | ***************************************
[2025-10-12 00:57:21] 2025-10-12 04:56:21,788 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 00:57:21] 2025-10-12 04:56:21,805 | INFO     | sufficient remaining disk space (29356982272 B)
[2025-10-12 00:57:21] 2025-10-12 04:56:21,805 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 00:57:21] 2025-10-12 04:56:21,805 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 00:57:21] 2025-10-12 04:56:21,806 | INFO     | update_server=False
[2025-10-12 00:57:21] 2025-10-12 04:56:21,806 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 00:57:21] 2025-10-12 04:56:21,806 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 00:57:21] 2025-10-12 04:56:21,806 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 00:57:21] 2025-10-12 04:56:22,131 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 00:57:21] 2025-10-12 04:56:22,131 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 00:57:21] 2025-10-12 04:56:22,132 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 00:57:21] 2025-10-12 04:56:22,132 | INFO     | will abort loop
[2025-10-12 00:57:21] 2025-10-12 04:56:22,695 | INFO     | all data control threads have been joined
[2025-10-12 00:57:21] 2025-10-12 04:56:22,807 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 00:57:21] 2025-10-12 04:56:22,811 | INFO     | [job] retrieve thread has finished
[2025-10-12 00:57:21] 2025-10-12 04:56:22,812 | INFO     | [job] queue monitor thread has finished
[2025-10-12 00:57:21] 2025-10-12 04:56:22,956 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 00:57:21] 2025-10-12 04:56:22,970 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 00:57:21] 2025-10-12 04:56:23,137 | INFO     | [job] job monitor thread has finished
[2025-10-12 00:57:21] 2025-10-12 04:56:23,190 | INFO     | all payload control threads have been joined
[2025-10-12 00:57:21] 2025-10-12 04:56:23,302 | INFO     | [payload] failed_post thread has finished
[2025-10-12 00:57:21] 2025-10-12 04:56:23,354 | INFO     | all job control threads have been joined
[2025-10-12 00:57:21] 2025-10-12 04:56:23,355 | INFO     | [data] copytool_in thread has finished
[2025-10-12 00:57:21] 2025-10-12 04:56:23,701 | INFO     | [data] control thread has finished
[2025-10-12 00:57:21] 2025-10-12 04:56:23,812 | INFO     | [data] copytool_out thread has finished
[2025-10-12 00:57:21] 2025-10-12 04:56:23,816 | INFO     | [job] validate thread has finished
[2025-10-12 00:57:21] 2025-10-12 04:56:23,882 | INFO     | [payload] validate_post thread has finished
[2025-10-12 00:57:21] 2025-10-12 04:56:23,990 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 00:57:21] 2025-10-12 04:56:24,195 | INFO     | [payload] control thread has finished
[2025-10-12 00:57:21] 2025-10-12 04:56:24,360 | INFO     | [job] control thread has finished
[2025-10-12 00:57:21] 2025-10-12 04:56:26,813 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 00:57:21] 2025-10-12 04:56:32,047 | INFO     | job.realtimelogging is not enabled
[2025-10-12 00:57:21] 2025-10-12 04:56:33,052 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 00:57:21] 2025-10-12 04:56:51,908 | INFO     | PID=12539 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 00:57:21] 2025-10-12 04:56:51,908 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 00:57:21] 2025-10-12 04:56:51,909 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 00:57:21] 2025-10-12 04:56:51,909 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 00:57:21] 2025-10-12 04:57:15,826 | INFO     | [monitor] cgroup control has ended
[2025-10-12 00:57:21] 2025-10-12 04:57:16,046 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140436145715008)>', '<ExcThread(monitor, started 140435473286912)>']
[2025-10-12 00:57:21] 2025-10-12 04:57:17,033 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 00:57:21] 2025-10-12 04:57:17,033 | INFO     | [monitor] control thread has ended
[2025-10-12 00:57:21] 2025-10-12 04:57:21,072 | INFO     | all workflow threads have been joined
[2025-10-12 00:57:21] 2025-10-12 04:57:21,072 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 00:57:21] 2025-10-12 04:57:21,073 | INFO     | traces error code: 0
[2025-10-12 00:57:21] 2025-10-12 04:57:21,073 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 00:57:21] 2025-10-12 04:57:21,160 [wrapper] ==== pilot stdout END ====
[2025-10-12 00:57:21] 2025-10-12 04:57:21,164 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 00:57:21] 2025-10-12 04:57:21,168 [wrapper] pilotpid: 12539
[2025-10-12 00:57:21] 2025-10-12 04:57:21,172 [wrapper] Pilot exit status: 0
[2025-10-12 00:57:21] 2025-10-12 04:57:21,189 [wrapper] pandaids: 6838989711
[2025-10-12 00:57:21] 2025-10-12 04:57:21,236 [wrapper] cleanup supervisor_pilot 17882 12540
[2025-10-12 00:57:21] 2025-10-12 04:57:21,240 [wrapper] Test setup, not cleaning
[2025-10-12 00:57:21] 2025-10-12 04:57:21,244 [wrapper] apfmon messages muted
[2025-10-12 00:57:21] 2025-10-12 04:57:21,248 [wrapper] ==== wrapper stdout END ====
[2025-10-12 00:57:21] 2025-10-12 04:57:21,252 [wrapper] ==== wrapper stderr END ====
[2025-10-12 00:57:21]  *** Error codes and diagnostics ***
[2025-10-12 00:57:21]     "exeErrorCode": 0,
[2025-10-12 00:57:21]     "exeErrorDiag": "",
[2025-10-12 00:57:21]     "pilotErrorCode": 0,
[2025-10-12 00:57:21]     "pilotErrorDiag": "",
[2025-10-12 00:57:21]  *** Listing of results directory ***
[2025-10-12 00:57:21] total 417960
[2025-10-12 00:57:21] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 17:39 pilot3.tar.gz
[2025-10-12 00:57:21] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 18:00 queuedata.json
[2025-10-12 00:57:21] -rwx------ 1 boincer umatlas     36292 Oct 11 18:00 runpilot2-wrapper.sh
[2025-10-12 00:57:21] -rw-r--r-- 1 boincer umatlas       100 Oct 11 23:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 00:57:21] -rwxr-xr-x 1 boincer umatlas      7986 Oct 11 23:43 run_atlas
[2025-10-12 00:57:21] -rw-r--r-- 1 boincer umatlas       105 Oct 11 23:43 job.xml
[2025-10-12 00:57:21] -rw-r--r-- 2 boincer umatlas 223086395 Oct 11 23:43 EVNT.46676267._002636.pool.root.1
[2025-10-12 00:57:21] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 23:43 start_atlas.sh
[2025-10-12 00:57:21] drwxrwx--x 2 boincer umatlas      4096 Oct 11 23:43 shared
[2025-10-12 00:57:21] -rw-r--r-- 2 boincer umatlas    569678 Oct 11 23:43 input.tar.gz
[2025-10-12 00:57:21] -rw-r--r-- 1 boincer umatlas         0 Oct 11 23:43 boinc_lockfile
[2025-10-12 00:57:21] -rw-r--r-- 1 boincer umatlas      2550 Oct 11 23:43 pandaJob.out
[2025-10-12 00:57:21] -rw------- 1 boincer umatlas    975512 Oct 11 23:44 agis_schedconf.cvmfs.json
[2025-10-12 00:57:21] -rw------- 1 boincer umatlas   1560580 Oct 11 23:44 agis_ddmendpoints.agis.ALL.json
[2025-10-12 00:57:21] drwx------ 5 boincer umatlas      4096 Oct 11 23:44 pilot3
[2025-10-12 00:57:21] -rw------- 1 boincer umatlas 198989248 Oct 12 00:55 HITS.46676269._065619.pool.root.1
[2025-10-12 00:57:21] -rw------- 1 boincer umatlas        95 Oct 12 00:56 pilot_heartbeat.json
[2025-10-12 00:57:21] -rw-r--r-- 1 boincer umatlas       529 Oct 12 00:56 boinc_task_state.xml
[2025-10-12 00:57:21] -rw------- 1 boincer umatlas      1050 Oct 12 00:56 memory_monitor_summary.json
[2025-10-12 00:57:21] -rw------- 1 boincer umatlas    378853 Oct 12 00:56 log.46676269._065619.job.log.tgz.1
[2025-10-12 00:57:21] -rw------- 1 boincer umatlas      7859 Oct 12 00:56 heartbeat.json
[2025-10-12 00:57:21] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 00:56 init_data.xml
[2025-10-12 00:57:21] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 00:57 boinc_mmap_file
[2025-10-12 00:57:21] -rw-r--r-- 1 boincer umatlas        27 Oct 12 00:57 wrapper_checkpoint.txt
[2025-10-12 00:57:21] -rw------- 1 boincer umatlas      5004 Oct 12 00:57 pilotlog.txt
[2025-10-12 00:57:21] -rw------- 1 boincer umatlas    630105 Oct 12 00:57 log.46676269._065619.job.log.1
[2025-10-12 00:57:21] -rw------- 1 boincer umatlas       357 Oct 12 00:57 output.list
[2025-10-12 00:57:21] -rw-r--r-- 1 boincer umatlas       620 Oct 12 00:57 runtime_log
[2025-10-12 00:57:21] -rw------- 1 boincer umatlas   1024000 Oct 12 00:57 result.tar.gz
[2025-10-12 00:57:21] -rw------- 1 boincer umatlas       659 Oct 12 00:57 Zc0LDmhowR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFjhNDmy4BGun.diag
[2025-10-12 00:57:21] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 00:57 runtime_log.err
[2025-10-12 00:57:21] -rw-r--r-- 1 boincer umatlas     22330 Oct 12 00:57 stderr.txt
[2025-10-12 00:57:21] HITS file was successfully produced:
[2025-10-12 00:57:21] -rw------- 1 boincer umatlas 198989248 Oct 12 00:55 shared/HITS.pool.root.1
[2025-10-12 00:57:21]  *** Contents of shared directory: ***
[2025-10-12 00:57:21] total 413768
[2025-10-12 00:57:21] -rw-r--r-- 2 boincer umatlas 223086395 Oct 11 23:43 ATLAS.root_0
[2025-10-12 00:57:21] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 23:43 start_atlas.sh
[2025-10-12 00:57:21] -rw-r--r-- 2 boincer umatlas    569678 Oct 11 23:43 input.tar.gz
[2025-10-12 00:57:21] -rw------- 1 boincer umatlas 198989248 Oct 12 00:55 HITS.pool.root.1
[2025-10-12 00:57:21] -rw------- 1 boincer umatlas   1024000 Oct 12 00:57 result.tar.gz
00:57:22 (7067): run_atlas exited; CPU time 47546.943088
00:57:22 (7067): called boinc_finish(0)

</stderr_txt>
]]>

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