Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:07:01 (2946718): wrapper (7.7.26015): starting
20:07:01 (2946718): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 20:07:01] Arguments: --nthreads 3
[2025-10-12 20:07:01] Threads: 3
[2025-10-12 20:07:01] Checking for CVMFS
[2025-10-12 20:07:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 20:07:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 20:07:01] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 20:07:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 20:07:01] 2.9.2.0 1564373 4605 86996 151631 1 56 4757911 36864000 0 130560 0 3617056 99.991 160082 905 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 20:07:01] CVMFS is ok
[2025-10-12 20:07:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 20:07:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 20:07:01] Further information can be found at the LHC@home message board.
[2025-10-12 20:07:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 20:07:01] Checking for apptainer binary...
[2025-10-12 20:07:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 20:07:01] Running /usr/bin/apptainer --version
[2025-10-12 20:07:01] apptainer version 1.4.1-1.1
[2025-10-12 20:07:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 20:07:01] thA371
[2025-10-12 20:07:01] apptainer works
[2025-10-12 20:07:01] Set ATHENA_PROC_NUMBER=3
[2025-10-12 20:07:01] Set ATHENA_CORE_NUMBER=3
[2025-10-12 20:07:01] Starting ATLAS job with PandaID=6838990122
[2025-10-12 20:07:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 21:29:19]  *** The last 200 lines of the pilot log: ***
[2025-10-12 21:29:19] 2025-10-12 19:28:48,362 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 21:29:19] 2025-10-12 19:28:48,363 | INFO     | did not find any defunct processes belonging to 2956870
[2025-10-12 21:29:19] 2025-10-12 19:28:48,364 | INFO     | did not find any defunct processes belonging to 2956870
[2025-10-12 21:29:19] 2025-10-12 19:28:48,364 | INFO     | ready for new job
[2025-10-12 21:29:19] 2025-10-12 19:28:48,364 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 21:29:19] 2025-10-12 19:28:48,365 | INFO     | ***************************************
[2025-10-12 21:29:19] 2025-10-12 19:28:48,365 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 21:29:19] 2025-10-12 19:28:48,365 | INFO     | ***************************************
[2025-10-12 21:29:19] 2025-10-12 19:28:48,365 | INFO     | 
[2025-10-12 21:29:19] 2025-10-12 19:28:48,365 | INFO     | architecture information:
[2025-10-12 21:29:19] 2025-10-12 19:28:48,366 | INFO     | executing command: cat /etc/os-release
[2025-10-12 21:29:19] 2025-10-12 19:28:48,374 | INFO     | cat /etc/os-release:
[2025-10-12 21:29:19] NAME="CentOS Linux"
[2025-10-12 21:29:19] VERSION="7 (Core)"
[2025-10-12 21:29:19] ID="centos"
[2025-10-12 21:29:19] ID_LIKE="rhel fedora"
[2025-10-12 21:29:19] VERSION_ID="7"
[2025-10-12 21:29:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 21:29:19] ANSI_COLOR="0;31"
[2025-10-12 21:29:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 21:29:19] HOME_URL="https://www.centos.org/"
[2025-10-12 21:29:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 21:29:19] 
[2025-10-12 21:29:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 21:29:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 21:29:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 21:29:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 21:29:19] 
[2025-10-12 21:29:19] 2025-10-12 19:28:48,374 | INFO     | ***************************************
[2025-10-12 21:29:19] 2025-10-12 19:28:48,877 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 21:29:19] 2025-10-12 19:28:48,889 | INFO     | sufficient remaining disk space (355017424896 B)
[2025-10-12 21:29:19] 2025-10-12 19:28:48,889 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 21:29:19] 2025-10-12 19:28:48,890 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 21:29:19] 2025-10-12 19:28:48,890 | INFO     | update_server=False
[2025-10-12 21:29:19] 2025-10-12 19:28:48,890 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 21:29:19] 2025-10-12 19:28:48,890 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:29:19] 2025-10-12 19:28:49,147 | INFO     | all data control threads have been joined
[2025-10-12 21:29:19] 2025-10-12 19:28:49,204 | INFO     | all payload control threads have been joined
[2025-10-12 21:29:19] 2025-10-12 19:28:49,317 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 21:29:19] 2025-10-12 19:28:49,318 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 21:29:19] 2025-10-12 19:28:49,318 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:29:19] 2025-10-12 19:28:49,318 | INFO     | will abort loop
[2025-10-12 21:29:19] 2025-10-12 19:28:49,732 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 21:29:19] 2025-10-12 19:28:49,891 | INFO     | [job] retrieve thread has finished
[2025-10-12 21:29:19] 2025-10-12 19:28:49,895 | INFO     | [job] queue monitor thread has finished
[2025-10-12 21:29:19] 2025-10-12 19:28:49,913 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 21:29:19] 2025-10-12 19:28:49,953 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 21:29:19] 2025-10-12 19:28:50,060 | INFO     | [payload] failed_post thread has finished
[2025-10-12 21:29:19] 2025-10-12 19:28:50,153 | INFO     | [data] control thread has finished
[2025-10-12 21:29:19] 2025-10-12 19:28:50,210 | INFO     | [payload] control thread has finished
[2025-10-12 21:29:19] 2025-10-12 19:28:50,323 | INFO     | [job] job monitor thread has finished
[2025-10-12 21:29:19] 2025-10-12 19:28:50,381 | INFO     | all job control threads have been joined
[2025-10-12 21:29:19] 2025-10-12 19:28:50,417 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 21:29:19] 2025-10-12 19:28:50,802 | INFO     | [data] copytool_in thread has finished
[2025-10-12 21:29:19] 2025-10-12 19:28:51,156 | INFO     | [payload] validate_post thread has finished
[2025-10-12 21:29:19] 2025-10-12 19:28:51,309 | INFO     | [job] validate thread has finished
[2025-10-12 21:29:19] 2025-10-12 19:28:51,387 | INFO     | [job] control thread has finished
[2025-10-12 21:29:19] 2025-10-12 19:28:51,390 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 21:29:19] 2025-10-12 19:28:51,738 | INFO     | [data] copytool_out thread has finished
[2025-10-12 21:29:19] 2025-10-12 19:28:53,959 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 21:29:19] 2025-10-12 19:28:59,845 | INFO     | job.realtimelogging is not enabled
[2025-10-12 21:29:19] 2025-10-12 19:29:00,851 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 21:29:19] 2025-10-12 19:29:12,228 | INFO     | [monitor] cgroup control has ended
[2025-10-12 21:29:19] 2025-10-12 19:29:12,815 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140371637716800)>', '<ExcThread(monitor, started 140371357042432)>']
[2025-10-12 21:29:19] 2025-10-12 19:29:17,841 | INFO     | all workflow threads have been joined
[2025-10-12 21:29:19] 2025-10-12 19:29:17,841 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 21:29:19] 2025-10-12 19:29:17,841 | INFO     | traces error code: 0
[2025-10-12 21:29:19] 2025-10-12 19:29:17,841 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 21:29:19] 2025-10-12 19:29:18,919 | INFO     | PID=2950440 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 21:29:19] 2025-10-12 19:29:18,920 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 21:29:19] 2025-10-12 19:29:18,920 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 21:29:19] 2025-10-12 19:29:18,920 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 21:29:19] 2025-10-12 19:29:18,920 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 21:29:19] 2025-10-12 19:29:18,920 | INFO     | [monitor] control thread has ended
[2025-10-12 21:29:19] 2025-10-12 19:29:18,966 [wrapper] ==== pilot stdout END ====
[2025-10-12 21:29:19] 2025-10-12 19:29:18,968 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 21:29:19] 2025-10-12 19:29:18,971 [wrapper] pilotpid: 2950440
[2025-10-12 21:29:19] 2025-10-12 19:29:18,973 [wrapper] Pilot exit status: 0
[2025-10-12 21:29:19] 2025-10-12 19:29:18,980 [wrapper] pandaids: 6838990122
[2025-10-12 21:29:19] 2025-10-12 19:29:18,996 [wrapper] cleanup supervisor_pilot 2969017 2950441
[2025-10-12 21:29:19] 2025-10-12 19:29:18,998 [wrapper] Test setup, not cleaning
[2025-10-12 21:29:19] 2025-10-12 19:29:19,001 [wrapper] apfmon messages muted
[2025-10-12 21:29:19] 2025-10-12 19:29:19,003 [wrapper] ==== wrapper stdout END ====
[2025-10-12 21:29:19] 2025-10-12 19:29:19,005 [wrapper] ==== wrapper stderr END ====
[2025-10-12 21:29:19]  *** Error codes and diagnostics ***
[2025-10-12 21:29:19]     "exeErrorCode": 0,
[2025-10-12 21:29:19]     "exeErrorDiag": "",
[2025-10-12 21:29:19]     "pilotErrorCode": 0,
[2025-10-12 21:29:19]     "pilotErrorDiag": "",
[2025-10-12 21:29:19]  *** Listing of results directory ***
[2025-10-12 21:29:19] total 412668
[2025-10-12 21:29:19] -rw-r--r-- 1 boinc boinc    557409 Oct 12 00:04 pilot3.tar.gz
[2025-10-12 21:29:19] -rw-r--r-- 1 boinc boinc      5112 Oct 12 00:06 queuedata.json
[2025-10-12 21:29:19] -rwx------ 1 boinc boinc     36292 Oct 12 00:07 runpilot2-wrapper.sh
[2025-10-12 21:29:19] -rw-r--r-- 1 boinc boinc       100 Oct 12 20:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 21:29:19] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 20:07 run_atlas
[2025-10-12 21:29:19] -rw-r--r-- 1 boinc boinc       105 Oct 12 20:07 job.xml
[2025-10-12 21:29:19] -rw-r--r-- 2 boinc boinc 220008907 Oct 12 20:07 EVNT.46676267._002645.pool.root.1
[2025-10-12 21:29:19] -rw-r--r-- 2 boinc boinc    569682 Oct 12 20:07 input.tar.gz
[2025-10-12 21:29:19] -rw-r--r-- 2 boinc boinc     15120 Oct 12 20:07 start_atlas.sh
[2025-10-12 21:29:19] drwxrwx--x 2 boinc boinc      4096 Oct 12 20:07 shared
[2025-10-12 21:29:19] -rw-r--r-- 1 boinc boinc         0 Oct 12 20:07 boinc_setup_complete
[2025-10-12 21:29:19] -rw-r--r-- 1 boinc boinc      6438 Oct 12 20:07 init_data.xml
[2025-10-12 21:29:19] -rw-r--r-- 1 boinc boinc         0 Oct 12 20:07 boinc_lockfile
[2025-10-12 21:29:19] -rw-r--r-- 1 boinc boinc      2550 Oct 12 20:07 pandaJob.out
[2025-10-12 21:29:19] -rw------- 1 boinc boinc    975528 Oct 12 20:07 agis_schedconf.cvmfs.json
[2025-10-12 21:29:19] -rw------- 1 boinc boinc   1560580 Oct 12 20:07 agis_ddmendpoints.agis.ALL.json
[2025-10-12 21:29:19] drwx------ 5 boinc boinc      4096 Oct 12 20:07 pilot3
[2025-10-12 21:29:19] -rw------- 1 boinc boinc 196742904 Oct 12 21:28 HITS.46676269._065843.pool.root.1
[2025-10-12 21:29:19] -rw-r--r-- 1 boinc boinc       529 Oct 12 21:28 boinc_task_state.xml
[2025-10-12 21:29:19] -rw------- 1 boinc boinc        95 Oct 12 21:28 pilot_heartbeat.json
[2025-10-12 21:29:19] -rw------- 1 boinc boinc      1020 Oct 12 21:28 memory_monitor_summary.json
[2025-10-12 21:29:19] -rw------- 1 boinc boinc    246982 Oct 12 21:28 log.46676269._065843.job.log.tgz.1
[2025-10-12 21:29:19] -rw------- 1 boinc boinc      7776 Oct 12 21:28 heartbeat.json
[2025-10-12 21:29:19] -rw-r--r-- 1 boinc boinc      8192 Oct 12 21:29 boinc_mmap_file
[2025-10-12 21:29:19] -rw-r--r-- 1 boinc boinc        27 Oct 12 21:29 wrapper_checkpoint.txt
[2025-10-12 21:29:19] -rw------- 1 boinc boinc       747 Oct 12 21:29 pilotlog.txt
[2025-10-12 21:29:19] -rw------- 1 boinc boinc    721200 Oct 12 21:29 log.46676269._065843.job.log.1
[2025-10-12 21:29:19] -rw------- 1 boinc boinc       357 Oct 12 21:29 output.list
[2025-10-12 21:29:19] -rw-r--r-- 1 boinc boinc       620 Oct 12 21:29 runtime_log
[2025-10-12 21:29:19] -rw------- 1 boinc boinc    983040 Oct 12 21:29 result.tar.gz
[2025-10-12 21:29:19] -rw-r--r-- 1 boinc boinc      8777 Oct 12 21:29 runtime_log.err
[2025-10-12 21:29:19] -rw------- 1 boinc boinc       658 Oct 12 21:29 3woKDmtvwR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmqkhNDmgaTPPn.diag
[2025-10-12 21:29:19] -rw-r--r-- 1 boinc boinc     10184 Oct 12 21:29 stderr.txt
[2025-10-12 21:29:19] HITS file was successfully produced:
[2025-10-12 21:29:19] -rw------- 1 boinc boinc 196742904 Oct 12 21:28 shared/HITS.pool.root.1
[2025-10-12 21:29:19]  *** Contents of shared directory: ***
[2025-10-12 21:29:19] total 408528
[2025-10-12 21:29:19] -rw-r--r-- 2 boinc boinc 220008907 Oct 12 20:07 ATLAS.root_0
[2025-10-12 21:29:19] -rw-r--r-- 2 boinc boinc    569682 Oct 12 20:07 input.tar.gz
[2025-10-12 21:29:19] -rw-r--r-- 2 boinc boinc     15120 Oct 12 20:07 start_atlas.sh
[2025-10-12 21:29:19] -rw------- 1 boinc boinc 196742904 Oct 12 21:28 HITS.pool.root.1
[2025-10-12 21:29:19] -rw------- 1 boinc boinc    983040 Oct 12 21:29 result.tar.gz
21:29:20 (2946718): run_atlas exited; CPU time 14008.064596
21:29:20 (2946718): called boinc_finish(0)

</stderr_txt>
]]>

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