Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:11:41 (2632588): wrapper (7.7.26015): starting
20:11:41 (2632588): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 20:11:41] Arguments: --nthreads 3
[2025-10-12 20:11:41] Threads: 3
[2025-10-12 20:11:41] Checking for CVMFS
[2025-10-12 20:11:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 20:11:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 20:11:41] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 20:11:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 20:11:41] 2.9.2.0 1204004 4585 83568 151631 3 56 4319854 36864000 0 130560 0 3546827 99.990 158658 787 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 20:11:41] CVMFS is ok
[2025-10-12 20:11:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 20:11:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 20:11:41] Further information can be found at the LHC@home message board.
[2025-10-12 20:11:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 20:11:41] Checking for apptainer binary...
[2025-10-12 20:11:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 20:11:41] Running /usr/bin/apptainer --version
[2025-10-12 20:11:41] apptainer version 1.4.1-1.1
[2025-10-12 20:11:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 20:11:41] thA312
[2025-10-12 20:11:41] apptainer works
[2025-10-12 20:11:41] Set ATHENA_PROC_NUMBER=3
[2025-10-12 20:11:41] Set ATHENA_CORE_NUMBER=3
[2025-10-12 20:11:41] Starting ATLAS job with PandaID=6838290231
[2025-10-12 20:11:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 21:33:59]  *** The last 200 lines of the pilot log: ***
[2025-10-12 21:33:59] 2025-10-12 19:33:06,454 | INFO     | update_server=False
[2025-10-12 21:33:59] 2025-10-12 19:33:06,454 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 21:33:59] 2025-10-12 19:33:06,454 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:33:59] 2025-10-12 19:33:06,580 | INFO     | all job control threads have been joined
[2025-10-12 21:33:59] 2025-10-12 19:33:06,883 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:33:59] 2025-10-12 19:33:06,883 | INFO     | aborting loop
[2025-10-12 21:33:59] 2025-10-12 19:33:06,887 | INFO     | all payload control threads have been joined
[2025-10-12 21:33:59] 2025-10-12 19:33:06,939 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 21:33:59] 2025-10-12 19:33:07,175 | INFO     | all data control threads have been joined
[2025-10-12 21:33:59] 2025-10-12 19:33:07,460 | INFO     | [job] retrieve thread has finished
[2025-10-12 21:33:59] 2025-10-12 19:33:07,460 | INFO     | [job] queue monitor thread has finished
[2025-10-12 21:33:59] 2025-10-12 19:33:07,482 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 21:33:59] 2025-10-12 19:33:07,559 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 21:33:59] 2025-10-12 19:33:07,586 | INFO     | [job] control thread has finished
[2025-10-12 21:33:59] 2025-10-12 19:33:07,690 | INFO     | [payload] failed_post thread has finished
[2025-10-12 21:33:59] 2025-10-12 19:33:07,690 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 21:33:59] 2025-10-12 19:33:07,887 | INFO     | [job] job monitor thread has finished
[2025-10-12 21:33:59] 2025-10-12 19:33:07,892 | INFO     | [payload] control thread has finished
[2025-10-12 21:33:59] 2025-10-12 19:33:08,181 | INFO     | [data] control thread has finished
[2025-10-12 21:33:59] 2025-10-12 19:33:08,270 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 21:33:59] 2025-10-12 19:33:08,328 | INFO     | [data] copytool_in thread has finished
[2025-10-12 21:33:59] 2025-10-12 19:33:08,525 | INFO     | [payload] validate_post thread has finished
[2025-10-12 21:33:59] 2025-10-12 19:33:08,892 | INFO     | [job] validate thread has finished
[2025-10-12 21:33:59] 2025-10-12 19:33:08,938 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 21:33:59] 2025-10-12 19:33:08,944 | INFO     | [data] copytool_out thread has finished
[2025-10-12 21:33:59] 2025-10-12 19:33:11,566 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 21:33:59] 2025-10-12 19:33:36,919 | INFO     | PID=2636303 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 21:33:59] 2025-10-12 19:33:36,920 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 21:33:59] 2025-10-12 19:33:36,920 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 21:33:59] 2025-10-12 19:33:36,920 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 21:33:59] 2025-10-12 19:33:53,260 | INFO     | [monitor] cgroup control has ended
[2025-10-12 21:33:59] 2025-10-12 19:33:54,721 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140053104645952)>', '<ExcThread(monitor, started 140052617217792)>']
[2025-10-12 21:33:59] 2025-10-12 19:33:55,011 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 21:33:59] 2025-10-12 19:33:55,012 | INFO     | [monitor] control thread has ended
[2025-10-12 21:33:59] 2025-10-12 19:33:59,730 | INFO     | all workflow threads have been joined
[2025-10-12 21:33:59] 2025-10-12 19:33:59,731 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 21:33:59] 2025-10-12 19:33:59,731 | INFO     | traces error code: 0
[2025-10-12 21:33:59] 2025-10-12 19:33:59,731 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 21:33:59] 2025-10-12 19:33:59,783 [wrapper] ==== pilot stdout END ====
[2025-10-12 21:33:59] 2025-10-12 19:33:59,785 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 21:33:59] 2025-10-12 19:33:59,787 [wrapper] pilotpid: 2636303
[2025-10-12 21:33:59] 2025-10-12 19:33:59,790 [wrapper] Pilot exit status: 0
[2025-10-12 21:33:59] 2025-10-12 19:33:59,797 [wrapper] pandaids: 6838290231
[2025-10-12 21:33:59] 2025-10-12 19:33:59,814 [wrapper] cleanup supervisor_pilot 2654835 2636304
[2025-10-12 21:33:59] 2025-10-12 19:33:59,817 [wrapper] Test setup, not cleaning
[2025-10-12 21:33:59] 2025-10-12 19:33:59,819 [wrapper] apfmon messages muted
[2025-10-12 21:33:59] 2025-10-12 19:33:59,822 [wrapper] ==== wrapper stdout END ====
[2025-10-12 21:33:59] 2025-10-12 19:33:59,824 [wrapper] ==== wrapper stderr END ====
[2025-10-12 21:33:59]  *** Error codes and diagnostics ***
[2025-10-12 21:33:59]     "exeErrorCode": 0,
[2025-10-12 21:33:59]     "exeErrorDiag": "",
[2025-10-12 21:33:59]     "pilotErrorCode": 0,
[2025-10-12 21:33:59]     "pilotErrorDiag": "",
[2025-10-12 21:33:59]  *** Listing of results directory ***
[2025-10-12 21:33:59] total 406144
[2025-10-12 21:33:59] -rw-r--r-- 1 boinc boinc    557409 Oct 11 10:40 pilot3.tar.gz
[2025-10-12 21:33:59] -rw-r--r-- 1 boinc boinc      5112 Oct 11 11:00 queuedata.json
[2025-10-12 21:33:59] -rwx------ 1 boinc boinc     36292 Oct 11 11:00 runpilot2-wrapper.sh
[2025-10-12 21:33:59] -rw-r--r-- 1 boinc boinc       100 Oct 12 20:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 21:33:59] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 20:11 run_atlas
[2025-10-12 21:33:59] -rw-r--r-- 1 boinc boinc       105 Oct 12 20:11 job.xml
[2025-10-12 21:33:59] -rw-r--r-- 2 boinc boinc 218281782 Oct 12 20:11 EVNT.46676267._002197.pool.root.1
[2025-10-12 21:33:59] -rw-r--r-- 2 boinc boinc    569679 Oct 12 20:11 input.tar.gz
[2025-10-12 21:33:59] -rw-r--r-- 2 boinc boinc     15120 Oct 12 20:11 start_atlas.sh
[2025-10-12 21:33:59] drwxrwx--x 2 boinc boinc      4096 Oct 12 20:11 shared
[2025-10-12 21:33:59] -rw-r--r-- 1 boinc boinc         0 Oct 12 20:11 boinc_setup_complete
[2025-10-12 21:33:59] -rw-r--r-- 1 boinc boinc      6437 Oct 12 20:11 init_data.xml
[2025-10-12 21:33:59] -rw-r--r-- 1 boinc boinc         0 Oct 12 20:11 boinc_lockfile
[2025-10-12 21:33:59] -rw-r--r-- 1 boinc boinc      2550 Oct 12 20:11 pandaJob.out
[2025-10-12 21:33:59] -rw------- 1 boinc boinc    975528 Oct 12 20:11 agis_schedconf.cvmfs.json
[2025-10-12 21:33:59] -rw------- 1 boinc boinc   1560580 Oct 12 20:11 agis_ddmendpoints.agis.ALL.json
[2025-10-12 21:33:59] drwx------ 5 boinc boinc      4096 Oct 12 20:11 pilot3
[2025-10-12 21:33:59] -rw------- 1 boinc boinc 191795568 Oct 12 21:32 HITS.46676269._054784.pool.root.1
[2025-10-12 21:33:59] -rw-r--r-- 1 boinc boinc       529 Oct 12 21:32 boinc_task_state.xml
[2025-10-12 21:33:59] -rw------- 1 boinc boinc      1022 Oct 12 21:32 memory_monitor_summary.json
[2025-10-12 21:33:59] -rw------- 1 boinc boinc    245905 Oct 12 21:32 log.46676269._054784.job.log.tgz.1
[2025-10-12 21:33:59] -rw------- 1 boinc boinc      7767 Oct 12 21:33 heartbeat.json
[2025-10-12 21:33:59] -rw------- 1 boinc boinc        95 Oct 12 21:33 pilot_heartbeat.json
[2025-10-12 21:33:59] -rw-r--r-- 1 boinc boinc        27 Oct 12 21:33 wrapper_checkpoint.txt
[2025-10-12 21:33:59] -rw-r--r-- 1 boinc boinc      8192 Oct 12 21:33 boinc_mmap_file
[2025-10-12 21:33:59] -rw------- 1 boinc boinc      4752 Oct 12 21:33 pilotlog.txt
[2025-10-12 21:33:59] -rw------- 1 boinc boinc    716084 Oct 12 21:33 log.46676269._054784.job.log.1
[2025-10-12 21:33:59] -rw------- 1 boinc boinc       357 Oct 12 21:33 output.list
[2025-10-12 21:33:59] -rw-r--r-- 1 boinc boinc       620 Oct 12 21:33 runtime_log
[2025-10-12 21:33:59] -rw------- 1 boinc boinc    983040 Oct 12 21:33 result.tar.gz
[2025-10-12 21:33:59] -rw-r--r-- 1 boinc boinc      8777 Oct 12 21:33 runtime_log.err
[2025-10-12 21:33:59] -rw------- 1 boinc boinc       658 Oct 12 21:33 R4IKDmDekR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmawfNDmU7wISo.diag
[2025-10-12 21:33:59] -rw-r--r-- 1 boinc boinc      7413 Oct 12 21:33 stderr.txt
[2025-10-12 21:33:59] HITS file was successfully produced:
[2025-10-12 21:33:59] -rw------- 1 boinc boinc 191795568 Oct 12 21:32 shared/HITS.pool.root.1
[2025-10-12 21:33:59]  *** Contents of shared directory: ***
[2025-10-12 21:33:59] total 402012
[2025-10-12 21:33:59] -rw-r--r-- 2 boinc boinc 218281782 Oct 12 20:11 ATLAS.root_0
[2025-10-12 21:33:59] -rw-r--r-- 2 boinc boinc    569679 Oct 12 20:11 input.tar.gz
[2025-10-12 21:33:59] -rw-r--r-- 2 boinc boinc     15120 Oct 12 20:11 start_atlas.sh
[2025-10-12 21:33:59] -rw------- 1 boinc boinc 191795568 Oct 12 21:32 HITS.pool.root.1
[2025-10-12 21:33:59] -rw------- 1 boinc boinc    983040 Oct 12 21:33 result.tar.gz
21:34:01 (2632588): run_atlas exited; CPU time 13987.532645
21:34:01 (2632588): called boinc_finish(0)

</stderr_txt>
]]>

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