Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:29:11 (32750): wrapper (7.7.26015): starting
23:29:11 (32750): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 23:29:11] Arguments: --nthreads 8
[2025-10-11 23:29:11] Threads: 8
[2025-10-11 23:29:11] Checking for CVMFS
[2025-10-11 23:29:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 23:29:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 23:29:11] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 23:29:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 23:29:12] 2.11.2.0 3213 627279 246488 151606 2 57 20186966 20275201 917 130560 1 357276344 99.992 26043276 20163 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 23:29:12] CVMFS is ok
[2025-10-11 23:29:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 23:29:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 23:29:12] Further information can be found at the LHC@home message board.
[2025-10-11 23:29:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 23:29:12] Checking for apptainer binary...
[2025-10-11 23:29:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 23:29:12] Running /usr/bin/apptainer --version
[2025-10-11 23:29:12] apptainer version 1.3.2-1.el7
[2025-10-11 23:29:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 23:29:12] c-205-38.aglt2.org
[2025-10-11 23:29:12] apptainer works
[2025-10-11 23:29:12] Set ATHENA_PROC_NUMBER=8
[2025-10-11 23:29:12] Set ATHENA_CORE_NUMBER=8
[2025-10-11 23:29:12] Starting ATLAS job with PandaID=6838990063
[2025-10-11 23:29:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 00:25:41]  *** The last 200 lines of the pilot log: ***
[2025-10-12 00:25:41] 2025-10-12 04:25:03,650 | WARNING  | process 10540 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 00:25:41] 2025-10-12 04:25:03,650 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6838990063/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 00:25:41] 2025-10-12 04:25:03,651 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6838990063/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 00:25:41] 2025-10-12 04:25:03,651 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-12 00:25:41] 2025-10-12 04:25:03,651 | WARNING  | maxPSS not found in memory monitor output
[2025-10-12 00:25:41] 2025-10-12 04:25:03,651 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2822050 B
[2025-10-12 00:25:41] 2025-10-12 04:25:03,652 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16160 B
[2025-10-12 00:25:41] 2025-10-12 04:25:03,652 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 00:25:41] 2025-10-12 04:25:03,664 | INFO     | sufficient remaining disk space (32725008384 B)
[2025-10-12 00:25:41] 2025-10-12 04:25:03,665 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-12 00:25:41] 2025-10-12 04:25:03,665 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6838990063: 3113924 B (within 2537553920 B limit)
[2025-10-12 00:25:41] 2025-10-12 04:25:03,665 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6838990063/HITS.46676269._065784.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-12 00:25:41] 2025-10-12 04:25:03,665 | INFO     | total size of present files: 0 B (workdir size: 3113924 B)
[2025-10-12 00:25:41] 2025-10-12 04:25:03,666 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6838990063/HITS.46676269._065784.pool.root.1 since it does not exist
[2025-10-12 00:25:41] 2025-10-12 04:25:03,727 | INFO     | number of running child processes to parent process 10540: 1
[2025-10-12 00:25:41] 2025-10-12 04:25:03,727 | INFO     | maximum number of monitored processes: 6
[2025-10-12 00:25:41] 2025-10-12 04:25:03,904 | INFO     | time since job start (3343s) is within the limit (172800.0s)
[2025-10-12 00:25:41] 2025-10-12 04:25:05,910 | INFO     | time since job start (3345s) is within the limit (172800.0s)
[2025-10-12 00:25:41] 2025-10-12 04:25:06,228 | INFO     | monitor loop #257: job 0:6838990063 is in state 'finished'
[2025-10-12 00:25:41] 2025-10-12 04:25:06,228 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 00:25:41] 2025-10-12 04:25:06,625 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 00:25:41] 2025-10-12 04:25:06,717 | INFO     | job 6838990063 has state=finished
[2025-10-12 00:25:41] 2025-10-12 04:25:06,717 | INFO     | preparing for final server update for job 6838990063 in state='finished'
[2025-10-12 00:25:41] 2025-10-12 04:25:06,718 | INFO     | this job has now completed (state=finished)
[2025-10-12 00:25:41] 2025-10-12 04:25:06,718 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 00:25:41] 2025-10-12 04:25:06,718 | INFO     | log transfer has been attempted: DONE
[2025-10-12 00:25:41] 2025-10-12 04:25:06,718 | INFO     | job 6838990063 has finished - writing final server update
[2025-10-12 00:25:41] 2025-10-12 04:25:06,719 | INFO     | total number of processed events: 400 (read)
[2025-10-12 00:25:41] 2025-10-12 04:25:06,719 | INFO     | executing command: lscpu
[2025-10-12 00:25:41] 2025-10-12 04:25:06,750 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 00:25:41] 2025-10-12 04:25:07,915 | INFO     | time since job start (3347s) is within the limit (172800.0s)
[2025-10-12 00:25:41] 2025-10-12 04:25:08,731 | INFO     | monitor loop #258: job 0:6838990063 is in state 'finished'
[2025-10-12 00:25:41] 2025-10-12 04:25:08,731 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 00:25:41] 2025-10-12 04:25:09,077 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 00:25:41] 2025-10-12 04:25:09,080 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2740.2095
[2025-10-12 00:25:41] 2025-10-12 04:25:09,082 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6838990063/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 00:25:41] 2025-10-12 04:25:09,083 | INFO     | extracted standard info from prmon json
[2025-10-12 00:25:41] 2025-10-12 04:25:09,083 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 00:25:41] 2025-10-12 04:25:09,083 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 00:25:41] 2025-10-12 04:25:09,083 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 00:25:41] 2025-10-12 04:25:09,083 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 00:25:41] 2025-10-12 04:25:09,084 | INFO     | fitting pss+swap vs Time
[2025-10-12 00:25:41] 2025-10-12 04:25:09,084 | INFO     | sum of square deviations: 34277852.0
[2025-10-12 00:25:41] 2025-10-12 04:25:09,084 | INFO     | sum of deviations: -4413542638.0
[2025-10-12 00:25:41] 2025-10-12 04:25:09,084 | INFO     | mean x: 1760241518.5
[2025-10-12 00:25:41] 2025-10-12 04:25:09,085 | INFO     | mean y: 2676291.1666666665
[2025-10-12 00:25:41] 2025-10-12 04:25:09,085 | INFO     | -- intersect: 226647595438.3062
[2025-10-12 00:25:41] 2025-10-12 04:25:09,085 | INFO     | intersect: 226647595438.3062
[2025-10-12 00:25:41] 2025-10-12 04:25:09,085 | INFO     | chi2: 0.019336355328873626
[2025-10-12 00:25:41] 2025-10-12 04:25:09,085 | INFO     | -- intersect: 226647595438.3062
[2025-10-12 00:25:41] 2025-10-12 04:25:09,085 | INFO     | current memory leak: -128.76 B/s (using 48 data points, chi2=0.02)
[2025-10-12 00:25:41] 2025-10-12 04:25:09,085 | INFO     | could have reported an average CPU frequency of 2802 MHz (5 samples)
[2025-10-12 00:25:41] 2025-10-12 04:25:09,085 | INFO     | ..............................
[2025-10-12 00:25:41] 2025-10-12 04:25:09,085 | INFO     | . Timing measurements:
[2025-10-12 00:25:41] 2025-10-12 04:25:09,085 | INFO     | . get job = 0 s
[2025-10-12 00:25:41] 2025-10-12 04:25:09,085 | INFO     | . initial setup = 2 s
[2025-10-12 00:25:41] 2025-10-12 04:25:09,085 | INFO     | . payload setup = 3 s
[2025-10-12 00:25:41] 2025-10-12 04:25:09,085 | INFO     | . stage-in = 0 s
[2025-10-12 00:25:41] 2025-10-12 04:25:09,085 | INFO     | . payload execution = 3322 s
[2025-10-12 00:25:41] 2025-10-12 04:25:09,085 | INFO     | . stage-out = 0 s
[2025-10-12 00:25:41] 2025-10-12 04:25:09,085 | INFO     | . log creation = 0 s
[2025-10-12 00:25:41] 2025-10-12 04:25:09,086 | INFO     | ..............................
[2025-10-12 00:25:41] 2025-10-12 04:25:09,128 | INFO     | 
[2025-10-12 00:25:41] 2025-10-12 04:25:09,129 | INFO     | job summary report
[2025-10-12 00:25:41] 2025-10-12 04:25:09,129 | INFO     | --------------------------------------------------
[2025-10-12 00:25:41] 2025-10-12 04:25:09,129 | INFO     | PanDA job id: 6838990063
[2025-10-12 00:25:41] 2025-10-12 04:25:09,129 | INFO     | task id: 46676269
[2025-10-12 00:25:41] 2025-10-12 04:25:09,129 | INFO     | errors: (none)
[2025-10-12 00:25:41] 2025-10-12 04:25:09,129 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 00:25:41] 2025-10-12 04:25:09,129 | INFO     | pilot state: finished 
[2025-10-12 00:25:41] 2025-10-12 04:25:09,129 | INFO     | transexitcode: 0
[2025-10-12 00:25:41] 2025-10-12 04:25:09,130 | INFO     | exeerrorcode: 0
[2025-10-12 00:25:41] 2025-10-12 04:25:09,130 | INFO     | exeerrordiag: 
[2025-10-12 00:25:41] 2025-10-12 04:25:09,130 | INFO     | exitcode: 0
[2025-10-12 00:25:41] 2025-10-12 04:25:09,130 | INFO     | exitmsg: OK
[2025-10-12 00:25:41] 2025-10-12 04:25:09,130 | INFO     | cpuconsumptiontime: 24514 s
[2025-10-12 00:25:41] 2025-10-12 04:25:09,130 | INFO     | nevents: 400
[2025-10-12 00:25:41] 2025-10-12 04:25:09,130 | INFO     | neventsw: 0
[2025-10-12 00:25:41] 2025-10-12 04:25:09,130 | INFO     | pid: 10540
[2025-10-12 00:25:41] 2025-10-12 04:25:09,130 | INFO     | pgrp: 10540
[2025-10-12 00:25:41] 2025-10-12 04:25:09,130 | INFO     | corecount: 8
[2025-10-12 00:25:41] 2025-10-12 04:25:09,131 | INFO     | event service: False
[2025-10-12 00:25:41] 2025-10-12 04:25:09,131 | INFO     | sizes: {0: 2348851, 3: 2349113, 11: 2349141, 3329: 2374837, 3330: 2383890, 3333: 2383918, 3336: 2384272}
[2025-10-12 00:25:41] 2025-10-12 04:25:09,131 | INFO     | --------------------------------------------------
[2025-10-12 00:25:41] 2025-10-12 04:25:09,131 | INFO     | 
[2025-10-12 00:25:41] 2025-10-12 04:25:09,131 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 00:25:41] 2025-10-12 04:25:09,149 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 00:25:41] 2025-10-12 04:25:09,149 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 00:25:41] 2025-10-12 04:25:09,149 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 00:25:41] 2025-10-12 04:25:09,150 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 00:25:41] 2025-10-12 04:25:09,150 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 00:25:41] 2025-10-12 04:25:09,150 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 00:25:41] 2025-10-12 04:25:09,150 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 00:25:41] 2025-10-12 04:25:09,150 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 00:25:41] 2025-10-12 04:25:09,150 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 00:25:41] 2025-10-12 04:25:09,150 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 00:25:41] 2025-10-12 04:25:09,150 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 00:25:41] 2025-10-12 04:25:09,150 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 00:25:41] 2025-10-12 04:25:09,151 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 00:25:41] 2025-10-12 04:25:09,151 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 00:25:41] 2025-10-12 04:25:09,151 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 00:25:41] 2025-10-12 04:25:09,151 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 00:25:41] 2025-10-12 04:25:09,151 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 00:25:41] 2025-10-12 04:25:09,151 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 00:25:41] 2025-10-12 04:25:09,151 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 00:25:41] 2025-10-12 04:25:09,151 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 00:25:41] 2025-10-12 04:25:09,151 | INFO     | job 6838990063 has completed (purged errors)
[2025-10-12 00:25:41] 2025-10-12 04:25:09,152 | INFO     | overall cleanup function is called
[2025-10-12 00:25:41] 2025-10-12 04:25:10,157 | INFO     | --- collectZombieJob: --- 10, [10540]
[2025-10-12 00:25:41] 2025-10-12 04:25:10,157 | INFO     | zombie collector waiting for pid 10540
[2025-10-12 00:25:41] 2025-10-12 04:25:10,157 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 00:25:41] 2025-10-12 04:25:10,157 | INFO     | collected zombie processes
[2025-10-12 00:25:41] 2025-10-12 04:25:10,157 | INFO     | will attempt to kill all subprocesses of pid=10540
[2025-10-12 00:25:41] 2025-10-12 04:25:10,248 | INFO     | process IDs to be killed: [10540] (in reverse order)
[2025-10-12 00:25:41] 2025-10-12 04:25:10,298 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 00:25:41] 2025-10-12 04:25:10,299 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 00:25:41] 2025-10-12 04:25:10,301 | INFO     | did not find any defunct processes belonging to 10540
[2025-10-12 00:25:41] 2025-10-12 04:25:10,304 | INFO     | did not find any defunct processes belonging to 10540
[2025-10-12 00:25:41] 2025-10-12 04:25:10,304 | INFO     | ready for new job
[2025-10-12 00:25:41] 2025-10-12 04:25:10,304 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 00:25:41] 2025-10-12 04:25:10,306 | INFO     | ***************************************
[2025-10-12 00:25:41] 2025-10-12 04:25:10,306 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 00:25:41] 2025-10-12 04:25:10,306 | INFO     | ***************************************
[2025-10-12 00:25:41] 2025-10-12 04:25:10,306 | INFO     | 
[2025-10-12 00:25:41] 2025-10-12 04:25:10,308 | INFO     | architecture information:
[2025-10-12 00:25:41] 2025-10-12 04:25:10,308 | INFO     | executing command: cat /etc/os-release
[2025-10-12 00:25:41] 2025-10-12 04:25:10,321 | INFO     | cat /etc/os-release:
[2025-10-12 00:25:41] NAME="CentOS Linux"
[2025-10-12 00:25:41] VERSION="7 (Core)"
[2025-10-12 00:25:41] ID="centos"
[2025-10-12 00:25:41] ID_LIKE="rhel fedora"
[2025-10-12 00:25:41] VERSION_ID="7"
[2025-10-12 00:25:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 00:25:41] ANSI_COLOR="0;31"
[2025-10-12 00:25:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 00:25:41] HOME_URL="https://www.centos.org/"
[2025-10-12 00:25:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 00:25:41] 
[2025-10-12 00:25:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 00:25:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 00:25:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 00:25:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 00:25:41] 
[2025-10-12 00:25:41] 2025-10-12 04:25:10,322 | INFO     | ***************************************
[2025-10-12 00:25:41] 2025-10-12 04:25:10,824 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 00:25:41] 2025-10-12 04:25:10,841 | INFO     | sufficient remaining disk space (32726056960 B)
[2025-10-12 00:25:41] 2025-10-12 04:25:10,841 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 00:25:41] 2025-10-12 04:25:10,842 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 00:25:41] 2025-10-12 04:25:10,842 | INFO     | update_server=False
[2025-10-12 00:25:41] 2025-10-12 04:25:10,842 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 00:25:41] 2025-10-12 04:25:10,842 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 00:25:41] 2025-10-12 04:25:10,974 | INFO     | all data control threads have been joined
[2025-10-12 00:25:41] 2025-10-12 04:25:11,234 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 00:25:41] 2025-10-12 04:25:11,235 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 00:25:41] 2025-10-12 04:25:11,235 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 00:25:41] 2025-10-12 04:25:11,235 | INFO     | will abort loop
[2025-10-12 00:25:41] 2025-10-12 04:25:11,594 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 00:25:41] 2025-10-12 04:25:11,847 | INFO     | [job] retrieve thread has finished
[2025-10-12 00:25:41] 2025-10-12 04:25:11,848 | INFO     | [job] queue monitor thread has finished
[2025-10-12 00:25:41] 2025-10-12 04:25:11,978 | INFO     | all payload control threads have been joined
[2025-10-12 00:25:41] 2025-10-12 04:25:11,979 | INFO     | [data] control thread has finished
[2025-10-12 00:25:41] 2025-10-12 04:25:12,002 | INFO     | [payload] validate_post thread has finished
[2025-10-12 00:25:41] 2025-10-12 04:25:12,241 | INFO     | [job] job monitor thread has finished
[2025-10-12 00:25:41] 2025-10-12 04:25:12,243 | INFO     | [payload] failed_post thread has finished
[2025-10-12 00:25:41] 2025-10-12 04:25:12,305 | INFO     | [data] copytool_in thread has finished
[2025-10-12 00:25:41] 2025-10-12 04:25:12,310 | INFO     | [job] validate thread has finished
[2025-10-12 00:25:41] 2025-10-12 04:25:12,537 | INFO     | all job control threads have been joined
[2025-10-12 00:25:41] 2025-10-12 04:25:12,569 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 00:25:41] 2025-10-12 04:25:12,721 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 00:25:41] 2025-10-12 04:25:12,884 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 00:25:41] 2025-10-12 04:25:12,936 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 00:25:41] 2025-10-12 04:25:12,984 | INFO     | [payload] control thread has finished
[2025-10-12 00:25:41] 2025-10-12 04:25:13,542 | INFO     | [job] control thread has finished
[2025-10-12 00:25:41] 2025-10-12 04:25:13,599 | INFO     | [data] copytool_out thread has finished
[2025-10-12 00:25:41] 2025-10-12 04:25:16,725 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 00:25:41] 2025-10-12 04:25:21,234 | INFO     | job.realtimelogging is not enabled
[2025-10-12 00:25:41] 2025-10-12 04:25:22,240 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 00:25:41] 2025-10-12 04:25:25,181 | INFO     | [monitor] cgroup control has ended
[2025-10-12 00:25:41] 2025-10-12 04:25:25,974 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139663742216000)>', '<ExcThread(monitor, started 139663444522752)>']
[2025-10-12 00:25:41] 2025-10-12 04:25:30,994 | INFO     | all workflow threads have been joined
[2025-10-12 00:25:41] 2025-10-12 04:25:30,995 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 00:25:41] 2025-10-12 04:25:30,995 | INFO     | traces error code: 0
[2025-10-12 00:25:41] 2025-10-12 04:25:30,995 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 00:25:41] 2025-10-12 04:25:41,073 | INFO     | PID=4134 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 00:25:41] 2025-10-12 04:25:41,074 | INFO     | .. there are 2 such processes running
[2025-10-12 00:25:41] 2025-10-12 04:25:41,074 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 00:25:41] 2025-10-12 04:25:41,074 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 00:25:41] 2025-10-12 04:25:41,074 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 00:25:41] 2025-10-12 04:25:41,074 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 00:25:41] 2025-10-12 04:25:41,074 | INFO     | [monitor] control thread has ended
[2025-10-12 00:25:41] 2025-10-12 04:25:41,189 [wrapper] ==== pilot stdout END ====
[2025-10-12 00:25:41] 2025-10-12 04:25:41,192 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 00:25:41] 2025-10-12 04:25:41,195 [wrapper] pilotpid: 4134
[2025-10-12 00:25:41] 2025-10-12 04:25:41,198 [wrapper] Pilot exit status: 0
[2025-10-12 00:25:41] 2025-10-12 04:25:41,207 [wrapper] pandaids: 6838990063
[2025-10-12 00:25:41] 2025-10-12 04:25:41,239 [wrapper] cleanup supervisor_pilot 17579 4135
[2025-10-12 00:25:41] 2025-10-12 04:25:41,241 [wrapper] Test setup, not cleaning
[2025-10-12 00:25:41] 2025-10-12 04:25:41,244 [wrapper] apfmon messages muted
[2025-10-12 00:25:41] 2025-10-12 04:25:41,246 [wrapper] ==== wrapper stdout END ====
[2025-10-12 00:25:41] 2025-10-12 04:25:41,249 [wrapper] ==== wrapper stderr END ====
[2025-10-12 00:25:41]  *** Error codes and diagnostics ***
[2025-10-12 00:25:41]     "exeErrorCode": 0,
[2025-10-12 00:25:41]     "exeErrorDiag": "",
[2025-10-12 00:25:41]     "pilotErrorCode": 0,
[2025-10-12 00:25:41]     "pilotErrorDiag": "",
[2025-10-12 00:25:41]  *** Listing of results directory ***
[2025-10-12 00:25:41] total 409260
[2025-10-12 00:25:41] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 17:39 pilot3.tar.gz
[2025-10-12 00:25:41] -rwx------ 1 boincer umatlas     36292 Oct 11 18:03 runpilot2-wrapper.sh
[2025-10-12 00:25:41] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 18:03 queuedata.json
[2025-10-12 00:25:41] -rw-r--r-- 1 boincer umatlas       100 Oct 11 23:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 00:25:41] -rwxr-xr-x 1 boincer umatlas      7986 Oct 11 23:29 run_atlas
[2025-10-12 00:25:41] -rw-r--r-- 1 boincer umatlas       105 Oct 11 23:29 job.xml
[2025-10-12 00:25:41] -rw-r--r-- 2 boincer umatlas 221537943 Oct 11 23:29 EVNT.46676267._002643.pool.root.1
[2025-10-12 00:25:41] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 23:29 start_atlas.sh
[2025-10-12 00:25:41] drwxrwx--x 2 boincer umatlas      4096 Oct 11 23:29 shared
[2025-10-12 00:25:41] -rw-r--r-- 2 boincer umatlas    569676 Oct 11 23:29 input.tar.gz
[2025-10-12 00:25:41] -rw-r--r-- 1 boincer umatlas         0 Oct 11 23:29 boinc_lockfile
[2025-10-12 00:25:41] -rw-r--r-- 1 boincer umatlas      2547 Oct 11 23:29 pandaJob.out
[2025-10-12 00:25:41] -rw------- 1 boincer umatlas    975512 Oct 11 23:29 agis_schedconf.cvmfs.json
[2025-10-12 00:25:41] -rw------- 1 boincer umatlas   1560580 Oct 11 23:29 agis_ddmendpoints.agis.ALL.json
[2025-10-12 00:25:41] drwx------ 5 boincer umatlas      4096 Oct 11 23:29 pilot3
[2025-10-12 00:25:41] -rw-r--r-- 1 boincer umatlas      6134 Oct 12 00:21 init_data.xml
[2025-10-12 00:25:41] -rw------- 1 boincer umatlas 192018882 Oct 12 00:24 HITS.46676269._065784.pool.root.1
[2025-10-12 00:25:41] -rw-r--r-- 1 boincer umatlas       529 Oct 12 00:24 boinc_task_state.xml
[2025-10-12 00:25:41] -rw------- 1 boincer umatlas        95 Oct 12 00:24 pilot_heartbeat.json
[2025-10-12 00:25:41] -rw------- 1 boincer umatlas      1047 Oct 12 00:24 memory_monitor_summary.json
[2025-10-12 00:25:41] -rw------- 1 boincer umatlas    295757 Oct 12 00:25 log.46676269._065784.job.log.tgz.1
[2025-10-12 00:25:41] -rw------- 1 boincer umatlas      7839 Oct 12 00:25 heartbeat.json
[2025-10-12 00:25:41] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 00:25 boinc_mmap_file
[2025-10-12 00:25:41] -rw-r--r-- 1 boincer umatlas        27 Oct 12 00:25 wrapper_checkpoint.txt
[2025-10-12 00:25:41] -rw------- 1 boincer umatlas       819 Oct 12 00:25 pilotlog.txt
[2025-10-12 00:25:41] -rw------- 1 boincer umatlas    516683 Oct 12 00:25 log.46676269._065784.job.log.1
[2025-10-12 00:25:41] -rw------- 1 boincer umatlas       357 Oct 12 00:25 output.list
[2025-10-12 00:25:41] -rw-r--r-- 1 boincer umatlas       620 Oct 12 00:25 runtime_log
[2025-10-12 00:25:41] -rw------- 1 boincer umatlas    829440 Oct 12 00:25 result.tar.gz
[2025-10-12 00:25:41] -rw-r--r-- 1 boincer umatlas      8703 Oct 12 00:25 runtime_log.err
[2025-10-12 00:25:41] -rw------- 1 boincer umatlas       657 Oct 12 00:25 iOJODm3rwR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmXgSMDmQjkskm.diag
[2025-10-12 00:25:41] -rw-r--r-- 1 boincer umatlas     22353 Oct 12 00:25 stderr.txt
[2025-10-12 00:25:41] HITS file was successfully produced:
[2025-10-12 00:25:41] -rw------- 1 boincer umatlas 192018882 Oct 12 00:24 shared/HITS.pool.root.1
[2025-10-12 00:25:41]  *** Contents of shared directory: ***
[2025-10-12 00:25:41] total 405260
[2025-10-12 00:25:41] -rw-r--r-- 2 boincer umatlas 221537943 Oct 11 23:29 ATLAS.root_0
[2025-10-12 00:25:41] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 23:29 start_atlas.sh
[2025-10-12 00:25:41] -rw-r--r-- 2 boincer umatlas    569676 Oct 11 23:29 input.tar.gz
[2025-10-12 00:25:41] -rw------- 1 boincer umatlas 192018882 Oct 12 00:24 HITS.pool.root.1
[2025-10-12 00:25:41] -rw------- 1 boincer umatlas    829440 Oct 12 00:25 result.tar.gz
00:25:42 (32750): run_atlas exited; CPU time 24466.798976
00:25:42 (32750): called boinc_finish(0)

</stderr_txt>
]]>

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