Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:29:56 (3982854): wrapper (7.7.26015): starting
23:29:56 (3982854): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 23:29:56] Arguments: --nthreads 12
[2025-10-11 23:29:56] Threads: 12
[2025-10-11 23:29:56] Checking for CVMFS
[2025-10-11 23:29:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 23:29:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 23:29:56] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 23:29:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 23:29:56] 2.13.2.0 3683012 12249 152308 151606 2 196 36740542 40960000 9018 16776704 0 135846127 99.850 55052375 32592 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 23:29:56] CVMFS is ok
[2025-10-11 23:29:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 23:29:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 23:29:56] Further information can be found at the LHC@home message board.
[2025-10-11 23:29:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 23:29:56] Checking for apptainer binary...
[2025-10-11 23:29:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 23:29:56] Running /usr/bin/apptainer --version
[2025-10-11 23:29:56] apptainer version 1.4.3-1.el9
[2025-10-11 23:29:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 23:29:57] c8-7-4.aglt2.org
[2025-10-11 23:29:57] apptainer works
[2025-10-11 23:29:57] Set ATHENA_PROC_NUMBER=12
[2025-10-11 23:29:57] Set ATHENA_CORE_NUMBER=12
[2025-10-11 23:29:57] Starting ATLAS job with PandaID=6838775043
[2025-10-11 23:29:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 00:03:14]  *** The last 200 lines of the pilot log: ***
[2025-10-12 00:03:14]  protocol_id=None
[2025-10-12 00:03:14]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 00:03:14]  replicas=None
[2025-10-12 00:03:14]  scope=mc23_13p6TeV
[2025-10-12 00:03:14]  status=None
[2025-10-12 00:03:14]  status_code=0
[2025-10-12 00:03:14]  storage_token=
[2025-10-12 00:03:14]  surl=/tmp/boinchome/slots/5/PanDA_Pilot-6838775043/log.46676269._062731.job.log.tgz.1
[2025-10-12 00:03:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/09/f6/log.46676269._062731.job.log.tgz.1
[2025-10-12 00:03:14]  workdir=None
[2025-10-12 00:03:14] ]
[2025-10-12 00:03:14] 2025-10-12 04:02:13,110 | INFO     | transferring file log.46676269._062731.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6838775043/log.46676269._062731.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 00:03:14] 2025-10-12 04:02:13,111 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6838775043/log.46676269._062731.job.log.tgz.1 /tmp/boinchome/slots/5/log.46676269._062731.job
[2025-10-12 00:03:14] 2025-10-12 04:02:13,127 | INFO     | adding to output.list: log.46676269._062731.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/09/f6/log.46676269._062731.job.log.tg
[2025-10-12 00:03:14] 2025-10-12 04:02:13,128 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 00:03:14] 2025-10-12 04:02:13,128 | INFO     | summary of transferred files:
[2025-10-12 00:03:14] 2025-10-12 04:02:13,128 | INFO     |  -- lfn=log.46676269._062731.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 00:03:14] 2025-10-12 04:02:13,128 | INFO     | stage-out finished correctly
[2025-10-12 00:03:14] 2025-10-12 04:02:14,912 | INFO     | time since job start (1928s) is within the limit (172800.0s)
[2025-10-12 00:03:14] 2025-10-12 04:02:16,345 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 00:03:14] 2025-10-12 04:02:16,405 | INFO     | job 6838775043 has state=finished
[2025-10-12 00:03:14] 2025-10-12 04:02:16,406 | INFO     | preparing for final server update for job 6838775043 in state='finished'
[2025-10-12 00:03:14] 2025-10-12 04:02:16,406 | INFO     | this job has now completed (state=finished)
[2025-10-12 00:03:14] 2025-10-12 04:02:16,406 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 00:03:14] 2025-10-12 04:02:16,406 | INFO     | log transfer has been attempted: DONE
[2025-10-12 00:03:14] 2025-10-12 04:02:16,406 | INFO     | job 6838775043 has finished - writing final server update
[2025-10-12 00:03:14] 2025-10-12 04:02:16,407 | INFO     | total number of processed events: 400 (read)
[2025-10-12 00:03:14] 2025-10-12 04:02:16,407 | INFO     | executing command: lscpu
[2025-10-12 00:03:14] 2025-10-12 04:02:16,471 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 00:03:14] 2025-10-12 04:02:16,917 | INFO     | time since job start (1930s) is within the limit (172800.0s)
[2025-10-12 00:03:14] 2025-10-12 04:02:17,729 | WARNING  | process 3994581 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 00:03:14] 2025-10-12 04:02:17,729 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6838775043/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 00:03:14] 2025-10-12 04:02:18,104 | INFO     | number of running child processes to parent process 3994581: 1
[2025-10-12 00:03:14] 2025-10-12 04:02:18,104 | INFO     | maximum number of monitored processes: 6
[2025-10-12 00:03:14] 2025-10-12 04:02:18,925 | INFO     | time since job start (1932s) is within the limit (172800.0s)
[2025-10-12 00:03:14] 2025-10-12 04:02:20,033 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 00:03:14] 2025-10-12 04:02:20,038 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3727.135945312495
[2025-10-12 00:03:14] 2025-10-12 04:02:20,053 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6838775043/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 00:03:14] 2025-10-12 04:02:20,054 | INFO     | extracted standard info from prmon json
[2025-10-12 00:03:14] 2025-10-12 04:02:20,054 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 00:03:14] 2025-10-12 04:02:20,054 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 00:03:14] 2025-10-12 04:02:20,054 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 00:03:14] 2025-10-12 04:02:20,054 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 00:03:14] 2025-10-12 04:02:20,055 | INFO     | fitting pss+swap vs Time
[2025-10-12 00:03:14] 2025-10-12 04:02:20,055 | INFO     | sum of square deviations: 4837300.0
[2025-10-12 00:03:14] 2025-10-12 04:02:20,055 | INFO     | sum of deviations: 36348069.999999985
[2025-10-12 00:03:14] 2025-10-12 04:02:20,055 | INFO     | mean x: 1760240867.0
[2025-10-12 00:03:14] 2025-10-12 04:02:20,056 | INFO     | mean y: 2419896.44
[2025-10-12 00:03:14] 2025-10-12 04:02:20,056 | INFO     | -- intersect: -13224247511.117245
[2025-10-12 00:03:14] 2025-10-12 04:02:20,056 | INFO     | intersect: -13224247511.117245
[2025-10-12 00:03:14] 2025-10-12 04:02:20,056 | INFO     | chi2: 0.0006894463775203438
[2025-10-12 00:03:14] 2025-10-12 04:02:20,056 | INFO     | -- intersect: -13224247511.117245
[2025-10-12 00:03:14] 2025-10-12 04:02:20,056 | INFO     | current memory leak: 7.51 B/s (using 25 data points, chi2=0.00)
[2025-10-12 00:03:14] 2025-10-12 04:02:20,056 | INFO     | could have reported an average CPU frequency of 3702 MHz (5 samples)
[2025-10-12 00:03:14] 2025-10-12 04:02:20,056 | INFO     | ..............................
[2025-10-12 00:03:14] 2025-10-12 04:02:20,056 | INFO     | . Timing measurements:
[2025-10-12 00:03:14] 2025-10-12 04:02:20,056 | INFO     | . get job = 0 s
[2025-10-12 00:03:14] 2025-10-12 04:02:20,056 | INFO     | . initial setup = 2 s
[2025-10-12 00:03:14] 2025-10-12 04:02:20,056 | INFO     | . payload setup = 4 s
[2025-10-12 00:03:14] 2025-10-12 04:02:20,056 | INFO     | . stage-in = 0 s
[2025-10-12 00:03:14] 2025-10-12 04:02:20,056 | INFO     | . payload execution = 1901 s
[2025-10-12 00:03:14] 2025-10-12 04:02:20,056 | INFO     | . stage-out = 0 s
[2025-10-12 00:03:14] 2025-10-12 04:02:20,056 | INFO     | . log creation = 0 s
[2025-10-12 00:03:14] 2025-10-12 04:02:20,056 | INFO     | ..............................
[2025-10-12 00:03:14] 2025-10-12 04:02:20,115 | INFO     | 
[2025-10-12 00:03:14] 2025-10-12 04:02:20,116 | INFO     | job summary report
[2025-10-12 00:03:14] 2025-10-12 04:02:20,116 | INFO     | --------------------------------------------------
[2025-10-12 00:03:14] 2025-10-12 04:02:20,116 | INFO     | PanDA job id: 6838775043
[2025-10-12 00:03:14] 2025-10-12 04:02:20,116 | INFO     | task id: 46676269
[2025-10-12 00:03:14] 2025-10-12 04:02:20,116 | INFO     | errors: (none)
[2025-10-12 00:03:14] 2025-10-12 04:02:20,116 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 00:03:14] 2025-10-12 04:02:20,116 | INFO     | pilot state: finished 
[2025-10-12 00:03:14] 2025-10-12 04:02:20,116 | INFO     | transexitcode: 0
[2025-10-12 00:03:14] 2025-10-12 04:02:20,116 | INFO     | exeerrorcode: 0
[2025-10-12 00:03:14] 2025-10-12 04:02:20,116 | INFO     | exeerrordiag: 
[2025-10-12 00:03:14] 2025-10-12 04:02:20,116 | INFO     | exitcode: 0
[2025-10-12 00:03:14] 2025-10-12 04:02:20,116 | INFO     | exitmsg: OK
[2025-10-12 00:03:14] 2025-10-12 04:02:20,116 | INFO     | cpuconsumptiontime: 20875 s
[2025-10-12 00:03:14] 2025-10-12 04:02:20,116 | INFO     | nevents: 400
[2025-10-12 00:03:14] 2025-10-12 04:02:20,116 | INFO     | neventsw: 0
[2025-10-12 00:03:14] 2025-10-12 04:02:20,116 | INFO     | pid: 3994581
[2025-10-12 00:03:14] 2025-10-12 04:02:20,116 | INFO     | pgrp: 3994581
[2025-10-12 00:03:14] 2025-10-12 04:02:20,116 | INFO     | corecount: 12
[2025-10-12 00:03:14] 2025-10-12 04:02:20,116 | INFO     | event service: False
[2025-10-12 00:03:14] 2025-10-12 04:02:20,116 | INFO     | sizes: {0: 2348857, 4: 2349119, 11: 2349147, 1909: 2374123, 1911: 2383121, 1914: 2383177, 1918: 2383531}
[2025-10-12 00:03:14] 2025-10-12 04:02:20,116 | INFO     | --------------------------------------------------
[2025-10-12 00:03:14] 2025-10-12 04:02:20,116 | INFO     | 
[2025-10-12 00:03:14] 2025-10-12 04:02:20,117 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-10-12 00:03:14] 2025-10-12 04:02:20,135 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 00:03:14] 2025-10-12 04:02:20,135 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 00:03:14] 2025-10-12 04:02:20,135 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 00:03:14] 2025-10-12 04:02:20,136 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 00:03:14] 2025-10-12 04:02:20,136 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 00:03:14] 2025-10-12 04:02:20,136 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 00:03:14] 2025-10-12 04:02:20,136 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 00:03:14] 2025-10-12 04:02:20,136 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 00:03:14] 2025-10-12 04:02:20,136 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 00:03:14] 2025-10-12 04:02:20,136 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 00:03:14] 2025-10-12 04:02:20,136 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 00:03:14] 2025-10-12 04:02:20,136 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 00:03:14] 2025-10-12 04:02:20,136 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 00:03:14] 2025-10-12 04:02:20,136 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 00:03:14] 2025-10-12 04:02:20,136 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 00:03:14] 2025-10-12 04:02:20,136 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 00:03:14] 2025-10-12 04:02:20,136 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 00:03:14] 2025-10-12 04:02:20,136 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 00:03:14] 2025-10-12 04:02:20,136 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 00:03:14] 2025-10-12 04:02:20,136 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 00:03:14] 2025-10-12 04:02:20,136 | INFO     | job 6838775043 has completed (purged errors)
[2025-10-12 00:03:14] 2025-10-12 04:02:20,136 | INFO     | overall cleanup function is called
[2025-10-12 00:03:14] 2025-10-12 04:02:21,144 | INFO     | --- collectZombieJob: --- 10, [3994581]
[2025-10-12 00:03:14] 2025-10-12 04:02:21,144 | INFO     | zombie collector waiting for pid 3994581
[2025-10-12 00:03:14] 2025-10-12 04:02:21,144 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 00:03:14] 2025-10-12 04:02:21,144 | INFO     | collected zombie processes
[2025-10-12 00:03:14] 2025-10-12 04:02:21,144 | INFO     | will attempt to kill all subprocesses of pid=3994581
[2025-10-12 00:03:14] 2025-10-12 04:02:21,513 | INFO     | process IDs to be killed: [3994581] (in reverse order)
[2025-10-12 00:03:14] 2025-10-12 04:02:21,641 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 00:03:14] 2025-10-12 04:02:21,641 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 00:03:14] 2025-10-12 04:02:21,661 | INFO     | did not find any defunct processes belonging to 3994581
[2025-10-12 00:03:14] 2025-10-12 04:02:21,678 | INFO     | did not find any defunct processes belonging to 3994581
[2025-10-12 00:03:14] 2025-10-12 04:02:21,678 | INFO     | ready for new job
[2025-10-12 00:03:14] 2025-10-12 04:02:21,678 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 00:03:14] 2025-10-12 04:02:21,679 | INFO     | ***************************************
[2025-10-12 00:03:14] 2025-10-12 04:02:21,679 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 00:03:14] 2025-10-12 04:02:21,679 | INFO     | ***************************************
[2025-10-12 00:03:14] 2025-10-12 04:02:21,679 | INFO     | 
[2025-10-12 00:03:14] 2025-10-12 04:02:21,697 | INFO     | architecture information:
[2025-10-12 00:03:14] 2025-10-12 04:02:21,697 | INFO     | executing command: cat /etc/os-release
[2025-10-12 00:03:14] 2025-10-12 04:02:21,712 | INFO     | cat /etc/os-release:
[2025-10-12 00:03:14] NAME="CentOS Linux"
[2025-10-12 00:03:14] VERSION="7 (Core)"
[2025-10-12 00:03:14] ID="centos"
[2025-10-12 00:03:14] ID_LIKE="rhel fedora"
[2025-10-12 00:03:14] VERSION_ID="7"
[2025-10-12 00:03:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 00:03:14] ANSI_COLOR="0;31"
[2025-10-12 00:03:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 00:03:14] HOME_URL="https://www.centos.org/"
[2025-10-12 00:03:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 00:03:14] 
[2025-10-12 00:03:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 00:03:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 00:03:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 00:03:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 00:03:14] 
[2025-10-12 00:03:14] 2025-10-12 04:02:21,713 | INFO     | ***************************************
[2025-10-12 00:03:14] 2025-10-12 04:02:22,216 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-10-12 00:03:14] 2025-10-12 04:02:22,230 | INFO     | sufficient remaining disk space (167961952256 B)
[2025-10-12 00:03:14] 2025-10-12 04:02:22,231 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 00:03:14] 2025-10-12 04:02:22,231 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 00:03:14] 2025-10-12 04:02:22,231 | INFO     | update_server=False
[2025-10-12 00:03:14] 2025-10-12 04:02:22,231 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 00:03:14] 2025-10-12 04:02:22,231 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 00:03:14] 2025-10-12 04:02:22,231 | INFO     | aborting loop
[2025-10-12 00:03:14] 2025-10-12 04:02:22,411 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 00:03:14] 2025-10-12 04:02:22,532 | INFO     | all job control threads have been joined
[2025-10-12 00:03:14] 2025-10-12 04:02:22,914 | INFO     | all data control threads have been joined
[2025-10-12 00:03:14] 2025-10-12 04:02:23,235 | INFO     | [job] retrieve thread has finished
[2025-10-12 00:03:14] 2025-10-12 04:02:23,237 | INFO     | [job] job monitor thread has finished
[2025-10-12 00:03:14] 2025-10-12 04:02:23,312 | INFO     | [data] copytool_in thread has finished
[2025-10-12 00:03:14] 2025-10-12 04:02:23,331 | INFO     | all payload control threads have been joined
[2025-10-12 00:03:14] 2025-10-12 04:02:23,445 | INFO     | [job] validate thread has finished
[2025-10-12 00:03:14] 2025-10-12 04:02:23,538 | INFO     | [job] control thread has finished
[2025-10-12 00:03:14] 2025-10-12 04:02:23,538 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 00:03:14] 2025-10-12 04:02:23,610 | INFO     | [payload] validate_post thread has finished
[2025-10-12 00:03:14] 2025-10-12 04:02:23,629 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 00:03:14] 2025-10-12 04:02:23,698 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 00:03:14] 2025-10-12 04:02:23,918 | INFO     | [data] control thread has finished
[2025-10-12 00:03:14] 2025-10-12 04:02:23,997 | INFO     | [payload] failed_post thread has finished
[2025-10-12 00:03:14] 2025-10-12 04:02:24,336 | INFO     | [payload] control thread has finished
[2025-10-12 00:03:14] 2025-10-12 04:02:24,371 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 00:03:14] 2025-10-12 04:02:25,125 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 00:03:14] 2025-10-12 04:02:25,701 | INFO     | [data] copytool_out thread has finished
[2025-10-12 00:03:14] 2025-10-12 04:02:26,133 | INFO     | [job] queue monitor thread has finished
[2025-10-12 00:03:14] 2025-10-12 04:02:26,417 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 00:03:14] 2025-10-12 04:02:32,625 | INFO     | job.realtimelogging is not enabled
[2025-10-12 00:03:14] 2025-10-12 04:02:33,630 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 00:03:14] 2025-10-12 04:02:52,473 | INFO     | PID=3987223 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 00:03:14] 2025-10-12 04:02:52,474 | INFO     | .. there are 12 such processes running
[2025-10-12 00:03:14] 2025-10-12 04:02:52,475 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 00:03:14] 2025-10-12 04:02:52,475 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 00:03:14] 2025-10-12 04:02:52,475 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 00:03:14] 2025-10-12 04:03:09,463 | INFO     | [monitor] cgroup control has ended
[2025-10-12 00:03:14] 2025-10-12 04:03:09,713 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140159487772480)>', '<ExcThread(monitor, started 140158858942208)>']
[2025-10-12 00:03:14] 2025-10-12 04:03:10,558 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 00:03:14] 2025-10-12 04:03:10,558 | INFO     | [monitor] control thread has ended
[2025-10-12 00:03:14] 2025-10-12 04:03:14,739 | INFO     | all workflow threads have been joined
[2025-10-12 00:03:14] 2025-10-12 04:03:14,739 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 00:03:14] 2025-10-12 04:03:14,739 | INFO     | traces error code: 0
[2025-10-12 00:03:14] 2025-10-12 04:03:14,739 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 00:03:14] 2025-10-12 04:03:14,820 [wrapper] ==== pilot stdout END ====
[2025-10-12 00:03:14] 2025-10-12 04:03:14,823 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 00:03:14] 2025-10-12 04:03:14,825 [wrapper] pilotpid: 3987223
[2025-10-12 00:03:14] 2025-10-12 04:03:14,827 [wrapper] Pilot exit status: 0
[2025-10-12 00:03:14] 2025-10-12 04:03:14,836 [wrapper] pandaids: 6838775043
[2025-10-12 00:03:14] 2025-10-12 04:03:14,924 [wrapper] cleanup supervisor_pilot   13458 3987224
[2025-10-12 00:03:14] 2025-10-12 04:03:14,927 [wrapper] Test setup, not cleaning
[2025-10-12 00:03:14] 2025-10-12 04:03:14,929 [wrapper] apfmon messages muted
[2025-10-12 00:03:14] 2025-10-12 04:03:14,931 [wrapper] ==== wrapper stdout END ====
[2025-10-12 00:03:14] 2025-10-12 04:03:14,933 [wrapper] ==== wrapper stderr END ====
[2025-10-12 00:03:14]  *** Error codes and diagnostics ***
[2025-10-12 00:03:14]     "exeErrorCode": 0,
[2025-10-12 00:03:14]     "exeErrorDiag": "",
[2025-10-12 00:03:14]     "pilotErrorCode": 0,
[2025-10-12 00:03:14]     "pilotErrorDiag": "",
[2025-10-12 00:03:14]  *** Listing of results directory ***
[2025-10-12 00:03:14] total 411764
[2025-10-12 00:03:14] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 14:14 pilot3.tar.gz
[2025-10-12 00:03:14] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 14:31 queuedata.json
[2025-10-12 00:03:14] -rwx------. 1 boincer umatlas     36292 Oct 11 14:33 runpilot2-wrapper.sh
[2025-10-12 00:03:14] -rw-r--r--. 1 boincer umatlas       100 Oct 11 23:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 00:03:14] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 23:29 run_atlas
[2025-10-12 00:03:14] -rw-r--r--. 1 boincer umatlas       105 Oct 11 23:29 job.xml
[2025-10-12 00:03:14] -rw-r--r--. 2 boincer umatlas 220056088 Oct 11 23:29 EVNT.46676267._002521.pool.root.1
[2025-10-12 00:03:14] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 23:29 start_atlas.sh
[2025-10-12 00:03:14] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 23:29 shared
[2025-10-12 00:03:14] -rw-r--r--. 2 boincer umatlas    569684 Oct 11 23:29 input.tar.gz
[2025-10-12 00:03:14] -rw-r--r--. 1 boincer umatlas         0 Oct 11 23:29 boinc_lockfile
[2025-10-12 00:03:14] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 23:29 pandaJob.out
[2025-10-12 00:03:14] -rw-------. 1 boincer umatlas    975512 Oct 11 23:30 agis_schedconf.cvmfs.json
[2025-10-12 00:03:14] -rw-------. 1 boincer umatlas   1560580 Oct 11 23:30 agis_ddmendpoints.agis.ALL.json
[2025-10-12 00:03:14] drwx------. 5 boincer umatlas      4096 Oct 11 23:30 pilot3
[2025-10-12 00:03:14] -rw-r--r--. 1 boincer umatlas      7164 Oct 11 23:55 init_data.xml
[2025-10-12 00:03:14] -rw-------. 1 boincer umatlas 196373891 Oct 12 00:01 HITS.46676269._062731.pool.root.1
[2025-10-12 00:03:14] -rw-r--r--. 1 boincer umatlas       529 Oct 12 00:01 boinc_task_state.xml
[2025-10-12 00:03:14] -rw-------. 1 boincer umatlas      1029 Oct 12 00:02 memory_monitor_summary.json
[2025-10-12 00:03:14] -rw-------. 1 boincer umatlas    338687 Oct 12 00:02 log.46676269._062731.job.log.tgz.1
[2025-10-12 00:03:14] -rw-------. 1 boincer umatlas      7769 Oct 12 00:02 heartbeat.json
[2025-10-12 00:03:14] -rw-------. 1 boincer umatlas        95 Oct 12 00:02 pilot_heartbeat.json
[2025-10-12 00:03:14] -rw-r--r--. 1 boincer umatlas        27 Oct 12 00:03 wrapper_checkpoint.txt
[2025-10-12 00:03:14] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 00:03 boinc_mmap_file
[2025-10-12 00:03:14] -rw-------. 1 boincer umatlas      4897 Oct 12 00:03 pilotlog.txt
[2025-10-12 00:03:14] -rw-------. 1 boincer umatlas    316316 Oct 12 00:03 log.46676269._062731.job.log.1
[2025-10-12 00:03:14] -rw-------. 1 boincer umatlas       357 Oct 12 00:03 output.list
[2025-10-12 00:03:14] -rw-r--r--. 1 boincer umatlas       620 Oct 12 00:03 runtime_log
[2025-10-12 00:03:14] -rw-------. 1 boincer umatlas    675840 Oct 12 00:03 result.tar.gz
[2025-10-12 00:03:14] -rw-r--r--. 1 boincer umatlas      8695 Oct 12 00:03 runtime_log.err
[2025-10-12 00:03:14] -rw-------. 1 boincer umatlas       648 Oct 12 00:03 9F9NDmzZtR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmHNSMDm0HT1om.diag
[2025-10-12 00:03:14] -rw-r--r--. 1 boincer umatlas     21770 Oct 12 00:03 stderr.txt
[2025-10-12 00:03:14] HITS file was successfully produced:
[2025-10-12 00:03:14] -rw-------. 1 boincer umatlas 196373891 Oct 12 00:01 shared/HITS.pool.root.1
[2025-10-12 00:03:14]  *** Contents of shared directory: ***
[2025-10-12 00:03:15] total 407916
[2025-10-12 00:03:15] -rw-r--r--. 2 boincer umatlas 220056088 Oct 11 23:29 ATLAS.root_0
[2025-10-12 00:03:15] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 23:29 start_atlas.sh
[2025-10-12 00:03:15] -rw-r--r--. 2 boincer umatlas    569684 Oct 11 23:29 input.tar.gz
[2025-10-12 00:03:15] -rw-------. 1 boincer umatlas 196373891 Oct 12 00:01 HITS.pool.root.1
[2025-10-12 00:03:15] -rw-------. 1 boincer umatlas    675840 Oct 12 00:03 result.tar.gz
00:03:16 (3982854): run_atlas exited; CPU time 20909.135431
00:03:16 (3982854): called boinc_finish(0)

</stderr_txt>
]]>

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