Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:30:53 (13650): wrapper (7.7.26015): starting
23:30:53 (13650): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 23:30:53] Arguments: --nthreads 12
[2025-10-11 23:30:53] Threads: 12
[2025-10-11 23:30:53] Checking for CVMFS
[2025-10-11 23:30:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 23:30:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 23:30:53] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 23:30:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 23:30:53] 2.11.2.0 2987 222298 98128 151606 3 56 13919722 20275200 1 130560 1 107921843 99.984 13374807 12218 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 23:30:53] CVMFS is ok
[2025-10-11 23:30:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 23:30:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 23:30:53] Further information can be found at the LHC@home message board.
[2025-10-11 23:30:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 23:30:53] Checking for apptainer binary...
[2025-10-11 23:30:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 23:30:53] Running /usr/bin/apptainer --version
[2025-10-11 23:30:53] apptainer version 1.3.2-1.el7
[2025-10-11 23:30:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 23:30:55] c-205-19.aglt2.org
[2025-10-11 23:30:55] apptainer works
[2025-10-11 23:30:55] Set ATHENA_PROC_NUMBER=12
[2025-10-11 23:30:55] Set ATHENA_CORE_NUMBER=12
[2025-10-11 23:30:55] Starting ATLAS job with PandaID=6838364756
[2025-10-11 23:30:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 00:41:41]  *** The last 200 lines of the pilot log: ***
[2025-10-12 00:41:41] 2025-10-12 04:41:00,601 | INFO     | summary of transferred files:
[2025-10-12 00:41:41] 2025-10-12 04:41:00,602 | INFO     |  -- lfn=log.46676269._056337.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 00:41:41] 2025-10-12 04:41:00,602 | INFO     | stage-out finished correctly
[2025-10-12 00:41:41] 2025-10-12 04:41:01,854 | INFO     | time since job start (4191s) is within the limit (172800.0s)
[2025-10-12 00:41:41] 2025-10-12 04:41:01,925 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 00:41:41] 2025-10-12 04:41:02,974 | INFO     | PID=17382 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 00:41:41] 2025-10-12 04:41:03,723 | WARNING  | process 23853 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 00:41:41] 2025-10-12 04:41:03,724 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6838364756/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 00:41:41] 2025-10-12 04:41:03,724 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6838364756/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 00:41:41] 2025-10-12 04:41:03,725 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-12 00:41:41] 2025-10-12 04:41:03,725 | WARNING  | maxPSS not found in memory monitor output
[2025-10-12 00:41:41] 2025-10-12 04:41:03,725 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3881903 B
[2025-10-12 00:41:41] 2025-10-12 04:41:03,726 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16271 B
[2025-10-12 00:41:41] 2025-10-12 04:41:03,726 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 00:41:41] 2025-10-12 04:41:03,743 | INFO     | sufficient remaining disk space (29373759488 B)
[2025-10-12 00:41:41] 2025-10-12 04:41:03,744 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-12 00:41:41] 2025-10-12 04:41:03,745 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6838364756: 4178993 B (within 2537553920 B limit)
[2025-10-12 00:41:41] 2025-10-12 04:41:03,745 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6838364756/HITS.46676269._056337.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-12 00:41:41] 2025-10-12 04:41:03,745 | INFO     | total size of present files: 0 B (workdir size: 4178993 B)
[2025-10-12 00:41:41] 2025-10-12 04:41:03,745 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6838364756/HITS.46676269._056337.pool.root.1 since it does not exist
[2025-10-12 00:41:41] 2025-10-12 04:41:03,838 | INFO     | number of running child processes to parent process 23853: 1
[2025-10-12 00:41:41] 2025-10-12 04:41:03,838 | INFO     | maximum number of monitored processes: 6
[2025-10-12 00:41:41] 2025-10-12 04:41:03,905 | INFO     | job 6838364756 has state=finished
[2025-10-12 00:41:41] 2025-10-12 04:41:03,905 | INFO     | preparing for final server update for job 6838364756 in state='finished'
[2025-10-12 00:41:41] 2025-10-12 04:41:03,905 | INFO     | this job has now completed (state=finished)
[2025-10-12 00:41:41] 2025-10-12 04:41:03,906 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 00:41:41] 2025-10-12 04:41:03,906 | INFO     | log transfer has been attempted: DONE
[2025-10-12 00:41:41] 2025-10-12 04:41:03,906 | INFO     | job 6838364756 has finished - writing final server update
[2025-10-12 00:41:41] 2025-10-12 04:41:03,906 | INFO     | total number of processed events: 400 (read)
[2025-10-12 00:41:41] 2025-10-12 04:41:03,907 | INFO     | executing command: lscpu
[2025-10-12 00:41:41] 2025-10-12 04:41:03,932 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 00:41:41] 2025-10-12 04:41:03,975 | INFO     | time since job start (4193s) is within the limit (172800.0s)
[2025-10-12 00:41:41] 2025-10-12 04:41:05,981 | INFO     | time since job start (4195s) is within the limit (172800.0s)
[2025-10-12 00:41:41] 2025-10-12 04:41:06,341 | INFO     | monitor loop #313: job 0:6838364756 is in state 'finished'
[2025-10-12 00:41:41] 2025-10-12 04:41:06,341 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 00:41:41] 2025-10-12 04:41:07,986 | INFO     | time since job start (4197s) is within the limit (172800.0s)
[2025-10-12 00:41:41] 2025-10-12 04:41:08,686 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 00:41:41] 2025-10-12 04:41:08,690 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-12 00:41:41] 2025-10-12 04:41:08,692 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6838364756/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 00:41:41] 2025-10-12 04:41:08,693 | INFO     | extracted standard info from prmon json
[2025-10-12 00:41:41] 2025-10-12 04:41:08,693 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 00:41:41] 2025-10-12 04:41:08,693 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 00:41:41] 2025-10-12 04:41:08,694 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 00:41:41] 2025-10-12 04:41:08,694 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 00:41:41] 2025-10-12 04:41:08,696 | INFO     | fitting pss+swap vs Time
[2025-10-12 00:41:41] 2025-10-12 04:41:08,696 | INFO     | sum of square deviations: 73882315.5
[2025-10-12 00:41:41] 2025-10-12 04:41:08,697 | INFO     | sum of deviations: -7694379570.0
[2025-10-12 00:41:41] 2025-10-12 04:41:08,697 | INFO     | mean x: 1760242064.5
[2025-10-12 00:41:41] 2025-10-12 04:41:08,697 | INFO     | mean y: 2802790.870967742
[2025-10-12 00:41:41] 2025-10-12 04:41:08,697 | INFO     | -- intersect: 183320968818.61847
[2025-10-12 00:41:41] 2025-10-12 04:41:08,697 | INFO     | intersect: 183320968818.61847
[2025-10-12 00:41:41] 2025-10-12 04:41:08,697 | INFO     | chi2: 0.049429024380363965
[2025-10-12 00:41:41] 2025-10-12 04:41:08,697 | INFO     | -- intersect: 183320968818.61847
[2025-10-12 00:41:41] 2025-10-12 04:41:08,698 | INFO     | current memory leak: -104.14 B/s (using 62 data points, chi2=0.05)
[2025-10-12 00:41:41] 2025-10-12 04:41:08,698 | INFO     | could have reported an average CPU frequency of 2030 MHz (6 samples)
[2025-10-12 00:41:41] 2025-10-12 04:41:08,698 | INFO     | ..............................
[2025-10-12 00:41:41] 2025-10-12 04:41:08,698 | INFO     | . Timing measurements:
[2025-10-12 00:41:41] 2025-10-12 04:41:08,698 | INFO     | . get job = 0 s
[2025-10-12 00:41:41] 2025-10-12 04:41:08,698 | INFO     | . initial setup = 2 s
[2025-10-12 00:41:41] 2025-10-12 04:41:08,698 | INFO     | . payload setup = 7 s
[2025-10-12 00:41:41] 2025-10-12 04:41:08,699 | INFO     | . stage-in = 0 s
[2025-10-12 00:41:41] 2025-10-12 04:41:08,699 | INFO     | . payload execution = 4161 s
[2025-10-12 00:41:41] 2025-10-12 04:41:08,699 | INFO     | . stage-out = 0 s
[2025-10-12 00:41:41] 2025-10-12 04:41:08,699 | INFO     | . log creation = 0 s
[2025-10-12 00:41:41] 2025-10-12 04:41:08,699 | INFO     | ..............................
[2025-10-12 00:41:41] 2025-10-12 04:41:08,782 | INFO     | 
[2025-10-12 00:41:41] 2025-10-12 04:41:08,783 | INFO     | job summary report
[2025-10-12 00:41:41] 2025-10-12 04:41:08,793 | INFO     | --------------------------------------------------
[2025-10-12 00:41:41] 2025-10-12 04:41:08,793 | INFO     | PanDA job id: 6838364756
[2025-10-12 00:41:41] 2025-10-12 04:41:08,793 | INFO     | task id: 46676269
[2025-10-12 00:41:41] 2025-10-12 04:41:08,793 | INFO     | errors: (none)
[2025-10-12 00:41:41] 2025-10-12 04:41:08,793 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 00:41:41] 2025-10-12 04:41:08,794 | INFO     | pilot state: finished 
[2025-10-12 00:41:41] 2025-10-12 04:41:08,794 | INFO     | transexitcode: 0
[2025-10-12 00:41:41] 2025-10-12 04:41:08,794 | INFO     | exeerrorcode: 0
[2025-10-12 00:41:41] 2025-10-12 04:41:08,794 | INFO     | exeerrordiag: 
[2025-10-12 00:41:41] 2025-10-12 04:41:08,794 | INFO     | exitcode: 0
[2025-10-12 00:41:41] 2025-10-12 04:41:08,794 | INFO     | exitmsg: OK
[2025-10-12 00:41:41] 2025-10-12 04:41:08,794 | INFO     | cpuconsumptiontime: 44323 s
[2025-10-12 00:41:41] 2025-10-12 04:41:08,794 | INFO     | nevents: 400
[2025-10-12 00:41:41] 2025-10-12 04:41:08,794 | INFO     | neventsw: 0
[2025-10-12 00:41:41] 2025-10-12 04:41:08,795 | INFO     | pid: 23853
[2025-10-12 00:41:41] 2025-10-12 04:41:08,795 | INFO     | pgrp: 23853
[2025-10-12 00:41:41] 2025-10-12 04:41:08,795 | INFO     | corecount: 12
[2025-10-12 00:41:41] 2025-10-12 04:41:08,795 | INFO     | event service: False
[2025-10-12 00:41:41] 2025-10-12 04:41:08,795 | INFO     | sizes: {0: 2348856, 5: 2349118, 11: 2349174, 4171: 2374993, 4174: 2383991, 4175: 2384047, 4182: 2384397}
[2025-10-12 00:41:41] 2025-10-12 04:41:08,795 | INFO     | --------------------------------------------------
[2025-10-12 00:41:41] 2025-10-12 04:41:08,795 | INFO     | 
[2025-10-12 00:41:41] 2025-10-12 04:41:08,795 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 00:41:41] 2025-10-12 04:41:08,821 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 00:41:41] 2025-10-12 04:41:08,822 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 00:41:41] 2025-10-12 04:41:08,822 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 00:41:41] 2025-10-12 04:41:08,822 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 00:41:41] 2025-10-12 04:41:08,822 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 00:41:41] 2025-10-12 04:41:08,822 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 00:41:41] 2025-10-12 04:41:08,823 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 00:41:41] 2025-10-12 04:41:08,823 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 00:41:41] 2025-10-12 04:41:08,823 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 00:41:41] 2025-10-12 04:41:08,823 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 00:41:41] 2025-10-12 04:41:08,823 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 00:41:41] 2025-10-12 04:41:08,824 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 00:41:41] 2025-10-12 04:41:08,824 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 00:41:41] 2025-10-12 04:41:08,824 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 00:41:41] 2025-10-12 04:41:08,824 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 00:41:41] 2025-10-12 04:41:08,824 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 00:41:41] 2025-10-12 04:41:08,824 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 00:41:41] 2025-10-12 04:41:08,825 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 00:41:41] 2025-10-12 04:41:08,825 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 00:41:41] 2025-10-12 04:41:08,825 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 00:41:41] 2025-10-12 04:41:08,825 | INFO     | job 6838364756 has completed (purged errors)
[2025-10-12 00:41:41] 2025-10-12 04:41:08,825 | INFO     | overall cleanup function is called
[2025-10-12 00:41:41] 2025-10-12 04:41:09,832 | INFO     | --- collectZombieJob: --- 10, [23853]
[2025-10-12 00:41:41] 2025-10-12 04:41:09,832 | INFO     | zombie collector waiting for pid 23853
[2025-10-12 00:41:41] 2025-10-12 04:41:09,832 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 00:41:41] 2025-10-12 04:41:09,832 | INFO     | collected zombie processes
[2025-10-12 00:41:41] 2025-10-12 04:41:09,832 | INFO     | will attempt to kill all subprocesses of pid=23853
[2025-10-12 00:41:41] 2025-10-12 04:41:09,926 | INFO     | process IDs to be killed: [23853] (in reverse order)
[2025-10-12 00:41:41] 2025-10-12 04:41:09,978 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 00:41:41] 2025-10-12 04:41:09,979 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 00:41:41] 2025-10-12 04:41:09,982 | INFO     | did not find any defunct processes belonging to 23853
[2025-10-12 00:41:41] 2025-10-12 04:41:09,986 | INFO     | did not find any defunct processes belonging to 23853
[2025-10-12 00:41:41] 2025-10-12 04:41:09,986 | INFO     | ready for new job
[2025-10-12 00:41:41] 2025-10-12 04:41:09,986 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 00:41:41] 2025-10-12 04:41:09,987 | INFO     | ***************************************
[2025-10-12 00:41:41] 2025-10-12 04:41:09,988 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 00:41:41] 2025-10-12 04:41:09,988 | INFO     | ***************************************
[2025-10-12 00:41:41] 2025-10-12 04:41:09,988 | INFO     | 
[2025-10-12 00:41:41] 2025-10-12 04:41:09,988 | INFO     | architecture information:
[2025-10-12 00:41:41] 2025-10-12 04:41:09,989 | INFO     | executing command: cat /etc/os-release
[2025-10-12 00:41:41] 2025-10-12 04:41:10,003 | INFO     | cat /etc/os-release:
[2025-10-12 00:41:41] NAME="CentOS Linux"
[2025-10-12 00:41:41] VERSION="7 (Core)"
[2025-10-12 00:41:41] ID="centos"
[2025-10-12 00:41:41] ID_LIKE="rhel fedora"
[2025-10-12 00:41:41] VERSION_ID="7"
[2025-10-12 00:41:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 00:41:41] ANSI_COLOR="0;31"
[2025-10-12 00:41:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 00:41:41] HOME_URL="https://www.centos.org/"
[2025-10-12 00:41:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 00:41:41] 
[2025-10-12 00:41:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 00:41:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 00:41:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 00:41:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 00:41:41] 
[2025-10-12 00:41:41] 2025-10-12 04:41:10,003 | INFO     | ***************************************
[2025-10-12 00:41:41] 2025-10-12 04:41:10,506 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 00:41:41] 2025-10-12 04:41:10,523 | INFO     | sufficient remaining disk space (29377953792 B)
[2025-10-12 00:41:41] 2025-10-12 04:41:10,523 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 00:41:41] 2025-10-12 04:41:10,523 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 00:41:41] 2025-10-12 04:41:10,523 | INFO     | update_server=False
[2025-10-12 00:41:41] 2025-10-12 04:41:10,524 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 00:41:41] 2025-10-12 04:41:10,524 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 00:41:41] 2025-10-12 04:41:10,524 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 00:41:41] 2025-10-12 04:41:10,524 | INFO     | aborting loop
[2025-10-12 00:41:41] 2025-10-12 04:41:10,561 | INFO     | all job control threads have been joined
[2025-10-12 00:41:41] 2025-10-12 04:41:10,763 | INFO     | all data control threads have been joined
[2025-10-12 00:41:41] 2025-10-12 04:41:11,197 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 00:41:41] 2025-10-12 04:41:11,529 | INFO     | [job] retrieve thread has finished
[2025-10-12 00:41:41] 2025-10-12 04:41:11,530 | INFO     | [job] queue monitor thread has finished
[2025-10-12 00:41:41] 2025-10-12 04:41:11,530 | INFO     | [job] job monitor thread has finished
[2025-10-12 00:41:41] 2025-10-12 04:41:11,567 | INFO     | [job] control thread has finished
[2025-10-12 00:41:41] 2025-10-12 04:41:11,628 | INFO     | [data] copytool_in thread has finished
[2025-10-12 00:41:41] 2025-10-12 04:41:11,768 | INFO     | [data] control thread has finished
[2025-10-12 00:41:41] 2025-10-12 04:41:11,983 | INFO     | all payload control threads have been joined
[2025-10-12 00:41:41] 2025-10-12 04:41:12,145 | INFO     | [job] validate thread has finished
[2025-10-12 00:41:41] 2025-10-12 04:41:12,204 | INFO     | [payload] validate_post thread has finished
[2025-10-12 00:41:41] 2025-10-12 04:41:12,206 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 00:41:41] 2025-10-12 04:41:12,374 | INFO     | [payload] failed_post thread has finished
[2025-10-12 00:41:41] 2025-10-12 04:41:12,513 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 00:41:41] 2025-10-12 04:41:12,817 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 00:41:41] 2025-10-12 04:41:12,833 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 00:41:41] 2025-10-12 04:41:12,988 | INFO     | [payload] control thread has finished
[2025-10-12 00:41:41] 2025-10-12 04:41:13,202 | INFO     | [data] copytool_out thread has finished
[2025-10-12 00:41:41] 2025-10-12 04:41:16,472 | INFO     | [monitor] cgroup control has ended
[2025-10-12 00:41:41] 2025-10-12 04:41:16,519 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 00:41:41] 2025-10-12 04:41:21,243 | INFO     | job.realtimelogging is not enabled
[2025-10-12 00:41:41] 2025-10-12 04:41:22,248 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 00:41:41] 2025-10-12 04:41:22,877 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139717581100864)>', '<ExcThread(monitor, started 139716661851904)>']
[2025-10-12 00:41:41] 2025-10-12 04:41:27,881 | INFO     | all workflow threads have been joined
[2025-10-12 00:41:41] 2025-10-12 04:41:27,881 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 00:41:41] 2025-10-12 04:41:27,881 | INFO     | traces error code: 0
[2025-10-12 00:41:41] 2025-10-12 04:41:27,882 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 00:41:41] 2025-10-12 04:41:41,185 | INFO     | PID=17382 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 00:41:41] 2025-10-12 04:41:41,185 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 00:41:41] 2025-10-12 04:41:41,185 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 00:41:41] 2025-10-12 04:41:41,185 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 00:41:41] 2025-10-12 04:41:41,185 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 00:41:41] 2025-10-12 04:41:41,186 | INFO     | [monitor] control thread has ended
[2025-10-12 00:41:41] 2025-10-12 04:41:41,281 [wrapper] ==== pilot stdout END ====
[2025-10-12 00:41:41] 2025-10-12 04:41:41,285 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 00:41:41] 2025-10-12 04:41:41,289 [wrapper] pilotpid: 17382
[2025-10-12 00:41:41] 2025-10-12 04:41:41,293 [wrapper] Pilot exit status: 0
[2025-10-12 00:41:41] 2025-10-12 04:41:41,308 [wrapper] pandaids: 6838364756
[2025-10-12 00:41:41] 2025-10-12 04:41:41,348 [wrapper] cleanup supervisor_pilot  1276 17383
[2025-10-12 00:41:41] 2025-10-12 04:41:41,352 [wrapper] Test setup, not cleaning
[2025-10-12 00:41:41] 2025-10-12 04:41:41,356 [wrapper] apfmon messages muted
[2025-10-12 00:41:41] 2025-10-12 04:41:41,359 [wrapper] ==== wrapper stdout END ====
[2025-10-12 00:41:41] 2025-10-12 04:41:41,363 [wrapper] ==== wrapper stderr END ====
[2025-10-12 00:41:41]  *** Error codes and diagnostics ***
[2025-10-12 00:41:41]     "exeErrorCode": 0,
[2025-10-12 00:41:41]     "exeErrorDiag": "",
[2025-10-12 00:41:41]     "pilotErrorCode": 0,
[2025-10-12 00:41:41]     "pilotErrorDiag": "",
[2025-10-12 00:41:41]  *** Listing of results directory ***
[2025-10-12 00:41:41] total 401972
[2025-10-12 00:41:41] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 06:52 pilot3.tar.gz
[2025-10-12 00:41:41] -rwx------ 1 boincer umatlas     36292 Oct 11 07:02 runpilot2-wrapper.sh
[2025-10-12 00:41:41] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 07:02 queuedata.json
[2025-10-12 00:41:41] -rw-r--r-- 1 boincer umatlas       100 Oct 11 23:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 00:41:41] -rwxr-xr-x 1 boincer umatlas      7986 Oct 11 23:30 run_atlas
[2025-10-12 00:41:41] -rw-r--r-- 1 boincer umatlas       105 Oct 11 23:30 job.xml
[2025-10-12 00:41:41] -rw-r--r-- 2 boincer umatlas 218624368 Oct 11 23:30 EVNT.46676267._002220.pool.root.1
[2025-10-12 00:41:41] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 23:30 start_atlas.sh
[2025-10-12 00:41:41] drwxrwx--x 2 boincer umatlas      4096 Oct 11 23:30 shared
[2025-10-12 00:41:41] -rw-r--r-- 2 boincer umatlas    569678 Oct 11 23:30 input.tar.gz
[2025-10-12 00:41:41] -rw-r--r-- 1 boincer umatlas         0 Oct 11 23:30 boinc_lockfile
[2025-10-12 00:41:41] -rw-r--r-- 1 boincer umatlas      2549 Oct 11 23:30 pandaJob.out
[2025-10-12 00:41:41] -rw------- 1 boincer umatlas    975512 Oct 11 23:31 agis_schedconf.cvmfs.json
[2025-10-12 00:41:41] -rw------- 1 boincer umatlas   1560580 Oct 11 23:31 agis_ddmendpoints.agis.ALL.json
[2025-10-12 00:41:41] drwx------ 5 boincer umatlas      4096 Oct 11 23:31 pilot3
[2025-10-12 00:41:41] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 00:38 init_data.xml
[2025-10-12 00:41:41] -rw------- 1 boincer umatlas 187128841 Oct 12 00:40 HITS.46676269._056337.pool.root.1
[2025-10-12 00:41:41] -rw-r--r-- 1 boincer umatlas       529 Oct 12 00:40 boinc_task_state.xml
[2025-10-12 00:41:41] -rw------- 1 boincer umatlas      1050 Oct 12 00:40 memory_monitor_summary.json
[2025-10-12 00:41:41] -rw------- 1 boincer umatlas    370572 Oct 12 00:41 log.46676269._056337.job.log.tgz.1
[2025-10-12 00:41:41] -rw------- 1 boincer umatlas        95 Oct 12 00:41 pilot_heartbeat.json
[2025-10-12 00:41:41] -rw------- 1 boincer umatlas      7860 Oct 12 00:41 heartbeat.json
[2025-10-12 00:41:41] -rw-r--r-- 1 boincer umatlas        27 Oct 12 00:41 wrapper_checkpoint.txt
[2025-10-12 00:41:41] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 00:41 boinc_mmap_file
[2025-10-12 00:41:41] -rw------- 1 boincer umatlas       745 Oct 12 00:41 pilotlog.txt
[2025-10-12 00:41:41] -rw------- 1 boincer umatlas    613379 Oct 12 00:41 log.46676269._056337.job.log.1
[2025-10-12 00:41:41] -rw------- 1 boincer umatlas       357 Oct 12 00:41 output.list
[2025-10-12 00:41:41] -rw-r--r-- 1 boincer umatlas       620 Oct 12 00:41 runtime_log
[2025-10-12 00:41:41] -rw------- 1 boincer umatlas   1003520 Oct 12 00:41 result.tar.gz
[2025-10-12 00:41:41] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 00:41 runtime_log.err
[2025-10-12 00:41:41] -rw------- 1 boincer umatlas       659 Oct 12 00:41 JHzMDmGYmR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYFgNDmnpOuVo.diag
[2025-10-12 00:41:41] -rw-r--r-- 1 boincer umatlas     22431 Oct 12 00:41 stderr.txt
[2025-10-12 00:41:41] HITS file was successfully produced:
[2025-10-12 00:41:41] -rw------- 1 boincer umatlas 187128841 Oct 12 00:40 shared/HITS.pool.root.1
[2025-10-12 00:41:41]  *** Contents of shared directory: ***
[2025-10-12 00:41:41] total 397808
[2025-10-12 00:41:41] -rw-r--r-- 2 boincer umatlas 218624368 Oct 11 23:30 ATLAS.root_0
[2025-10-12 00:41:41] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 23:30 start_atlas.sh
[2025-10-12 00:41:41] -rw-r--r-- 2 boincer umatlas    569678 Oct 11 23:30 input.tar.gz
[2025-10-12 00:41:41] -rw------- 1 boincer umatlas 187128841 Oct 12 00:40 HITS.pool.root.1
[2025-10-12 00:41:41] -rw------- 1 boincer umatlas   1003520 Oct 12 00:41 result.tar.gz
00:41:43 (13650): run_atlas exited; CPU time 44294.126311
00:41:43 (13650): called boinc_finish(0)

</stderr_txt>
]]>

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