Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:55:28 (3170913): wrapper (7.7.26015): starting
12:55:28 (3170913): wrapper: running run_atlas (--nthreads 6)
[2025-10-12 12:55:28] Arguments: --nthreads 6
[2025-10-12 12:55:28] Threads: 6
[2025-10-12 12:55:28] Checking for CVMFS
[2025-10-12 12:55:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 12:55:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 12:55:28] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 12:55:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 12:55:29] 2.11.5.0 3651556 3786 70928 151606 2 188 38615994 52428801 1858 130560 0 11729846 99.997 127304 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-12 12:55:29] CVMFS is ok
[2025-10-12 12:55:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 12:55:29] Checking for apptainer binary...
[2025-10-12 12:55:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 12:55:29] Running /usr/bin/apptainer --version
[2025-10-12 12:55:29] apptainer version 1.3.5-1.el9
[2025-10-12 12:55:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 12:55:29] testio008
[2025-10-12 12:55:29] apptainer works
[2025-10-12 12:55:29] Set ATHENA_PROC_NUMBER=6
[2025-10-12 12:55:29] Set ATHENA_CORE_NUMBER=6
[2025-10-12 12:55:29] Starting ATLAS job with PandaID=6838851203
[2025-10-12 12:55:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 14:05:05]  *** The last 200 lines of the pilot log: ***
[2025-10-12 14:05:05]  surl=/var/lib/boinc/slots/2/PanDA_Pilot-6838851203/log.46676269._063505.job.log.tgz.1
[2025-10-12 14:05:05]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0b/cd/log.46676269._063505.job.log.tgz.1
[2025-10-12 14:05:05]  workdir=None
[2025-10-12 14:05:05] ]
[2025-10-12 14:05:05] 2025-10-12 05:04:25,838 | INFO     | transferring file log.46676269._063505.job.log.tgz.1 from /var/lib/boinc/slots/2/PanDA_Pilot-6838851203/log.46676269._063505.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-12 14:05:05] 2025-10-12 05:04:25,838 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/2/PanDA_Pilot-6838851203/log.46676269._063505.job.log.tgz.1 /var/lib/boinc/slots/2/log.46676269._063505.job
[2025-10-12 14:05:05] 2025-10-12 05:04:25,846 | INFO     | adding to output.list: log.46676269._063505.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0b/cd/log.46676269._063505.job.log.tg
[2025-10-12 14:05:05] 2025-10-12 05:04:25,846 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 14:05:05] 2025-10-12 05:04:25,847 | INFO     | summary of transferred files:
[2025-10-12 14:05:05] 2025-10-12 05:04:25,847 | INFO     |  -- lfn=log.46676269._063505.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 14:05:05] 2025-10-12 05:04:25,847 | INFO     | stage-out finished correctly
[2025-10-12 14:05:05] 2025-10-12 05:04:26,267 | INFO     | time since job start (4127s) is within the limit (172800.0s)
[2025-10-12 14:05:05] 2025-10-12 05:04:27,317 | INFO     | PID=3174675 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 14:05:05] 2025-10-12 05:04:27,317 | INFO     | .. there are 3 such processes running
[2025-10-12 14:05:05] 2025-10-12 05:04:27,717 | INFO     | monitor loop #308: job 0:6838851203 is in state 'finished'
[2025-10-12 14:05:05] 2025-10-12 05:04:27,718 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 14:05:05] 2025-10-12 05:04:28,317 | INFO     | time since job start (4129s) is within the limit (172800.0s)
[2025-10-12 14:05:05] 2025-10-12 05:04:28,717 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 14:05:05] 2025-10-12 05:04:29,818 | INFO     | job 6838851203 has state=finished
[2025-10-12 14:05:05] 2025-10-12 05:04:29,818 | INFO     | preparing for final server update for job 6838851203 in state='finished'
[2025-10-12 14:05:05] 2025-10-12 05:04:29,818 | INFO     | this job has now completed (state=finished)
[2025-10-12 14:05:05] 2025-10-12 05:04:29,818 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 14:05:05] 2025-10-12 05:04:29,818 | INFO     | log transfer has been attempted: DONE
[2025-10-12 14:05:05] 2025-10-12 05:04:29,818 | INFO     | job 6838851203 has finished - writing final server update
[2025-10-12 14:05:05] 2025-10-12 05:04:29,819 | INFO     | total number of processed events: 400 (read)
[2025-10-12 14:05:05] 2025-10-12 05:04:29,819 | INFO     | executing command: lscpu
[2025-10-12 14:05:05] 2025-10-12 05:04:29,837 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 14:05:05] 2025-10-12 05:04:30,226 | INFO     | monitor loop #309: job 0:6838851203 is in state 'finished'
[2025-10-12 14:05:05] 2025-10-12 05:04:30,226 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 14:05:05] 2025-10-12 05:04:30,323 | INFO     | time since job start (4131s) is within the limit (172800.0s)
[2025-10-12 14:05:05] 2025-10-12 05:04:32,328 | INFO     | time since job start (4133s) is within the limit (172800.0s)
[2025-10-12 14:05:05] 2025-10-12 05:04:32,728 | INFO     | monitor loop #310: job 0:6838851203 is in state 'finished'
[2025-10-12 14:05:05] 2025-10-12 05:04:32,729 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 14:05:05] 2025-10-12 05:04:33,147 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 14:05:05] 2025-10-12 05:04:33,148 | INFO     | found 12 cores (12 cores per socket, 1 socket) , CPU MHz: 4270.006500000001
[2025-10-12 14:05:05] 2025-10-12 05:04:33,150 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6838851203/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 14:05:05] 2025-10-12 05:04:33,150 | INFO     | extracted standard info from prmon json
[2025-10-12 14:05:05] 2025-10-12 05:04:33,150 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 14:05:05] 2025-10-12 05:04:33,150 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 14:05:05] 2025-10-12 05:04:33,151 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 14:05:05] 2025-10-12 05:04:33,151 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 14:05:05] 2025-10-12 05:04:33,151 | INFO     | fitting pss+swap vs Time
[2025-10-12 14:05:05] 2025-10-12 05:04:33,151 | INFO     | sum of square deviations: 70360209.93442622
[2025-10-12 14:05:05] 2025-10-12 05:04:33,152 | INFO     | sum of deviations: 617545245.1639344
[2025-10-12 14:05:05] 2025-10-12 05:04:33,152 | INFO     | mean x: 1760243494.0327868
[2025-10-12 14:05:05] 2025-10-12 05:04:33,152 | INFO     | mean y: 2440833.918032787
[2025-10-12 14:05:05] 2025-10-12 05:04:33,152 | INFO     | -- intersect: -15447058266.266289
[2025-10-12 14:05:05] 2025-10-12 05:04:33,152 | INFO     | intersect: -15447058266.266289
[2025-10-12 14:05:05] 2025-10-12 05:04:33,152 | INFO     | chi2: 0.014302907039923835
[2025-10-12 14:05:05] 2025-10-12 05:04:33,152 | INFO     | -- intersect: -15447058266.266289
[2025-10-12 14:05:05] 2025-10-12 05:04:33,152 | INFO     | current memory leak: 8.78 B/s (using 61 data points, chi2=0.01)
[2025-10-12 14:05:05] 2025-10-12 05:04:33,152 | INFO     | could have reported an average CPU frequency of 3039 MHz (6 samples)
[2025-10-12 14:05:05] 2025-10-12 05:04:33,152 | INFO     | ..............................
[2025-10-12 14:05:05] 2025-10-12 05:04:33,152 | INFO     | . Timing measurements:
[2025-10-12 14:05:05] 2025-10-12 05:04:33,152 | INFO     | . get job = 0 s
[2025-10-12 14:05:05] 2025-10-12 05:04:33,152 | INFO     | . initial setup = 6 s
[2025-10-12 14:05:05] 2025-10-12 05:04:33,152 | INFO     | . payload setup = 3 s
[2025-10-12 14:05:05] 2025-10-12 05:04:33,152 | INFO     | . stage-in = 0 s
[2025-10-12 14:05:05] 2025-10-12 05:04:33,152 | INFO     | . payload execution = 4106 s
[2025-10-12 14:05:05] 2025-10-12 05:04:33,152 | INFO     | . stage-out = 0 s
[2025-10-12 14:05:05] 2025-10-12 05:04:33,152 | INFO     | . log creation = 0 s
[2025-10-12 14:05:05] 2025-10-12 05:04:33,152 | INFO     | ..............................
[2025-10-12 14:05:05] 2025-10-12 05:04:33,195 | INFO     | 
[2025-10-12 14:05:05] 2025-10-12 05:04:33,195 | INFO     | job summary report
[2025-10-12 14:05:05] 2025-10-12 05:04:33,195 | INFO     | --------------------------------------------------
[2025-10-12 14:05:05] 2025-10-12 05:04:33,195 | INFO     | PanDA job id: 6838851203
[2025-10-12 14:05:05] 2025-10-12 05:04:33,195 | INFO     | task id: 46676269
[2025-10-12 14:05:05] 2025-10-12 05:04:33,195 | INFO     | errors: (none)
[2025-10-12 14:05:05] 2025-10-12 05:04:33,195 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 14:05:05] 2025-10-12 05:04:33,196 | INFO     | pilot state: finished 
[2025-10-12 14:05:05] 2025-10-12 05:04:33,196 | INFO     | transexitcode: 0
[2025-10-12 14:05:05] 2025-10-12 05:04:33,196 | INFO     | exeerrorcode: 0
[2025-10-12 14:05:05] 2025-10-12 05:04:33,196 | INFO     | exeerrordiag: 
[2025-10-12 14:05:05] 2025-10-12 05:04:33,196 | INFO     | exitcode: 0
[2025-10-12 14:05:05] 2025-10-12 05:04:33,196 | INFO     | exitmsg: OK
[2025-10-12 14:05:05] 2025-10-12 05:04:33,196 | INFO     | cpuconsumptiontime: 21849 s
[2025-10-12 14:05:05] 2025-10-12 05:04:33,196 | INFO     | nevents: 400
[2025-10-12 14:05:05] 2025-10-12 05:04:33,196 | INFO     | neventsw: 0
[2025-10-12 14:05:05] 2025-10-12 05:04:33,196 | INFO     | pid: 3181394
[2025-10-12 14:05:05] 2025-10-12 05:04:33,196 | INFO     | pgrp: 3181394
[2025-10-12 14:05:05] 2025-10-12 05:04:33,196 | INFO     | corecount: 6
[2025-10-12 14:05:05] 2025-10-12 05:04:33,196 | INFO     | event service: False
[2025-10-12 14:05:05] 2025-10-12 05:04:33,196 | INFO     | sizes: {0: 2348029, 1: 2348885, 4: 2349147, 11: 2349175, 4113: 2375103, 4114: 2384101, 4117: 2384285, 4121: 2384479}
[2025-10-12 14:05:05] 2025-10-12 05:04:33,196 | INFO     | --------------------------------------------------
[2025-10-12 14:05:05] 2025-10-12 05:04:33,196 | INFO     | 
[2025-10-12 14:05:05] 2025-10-12 05:04:33,196 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-10-12 14:05:05] 2025-10-12 05:04:33,204 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 14:05:05] 2025-10-12 05:04:33,204 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 14:05:05] 2025-10-12 05:04:33,205 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 14:05:05] 2025-10-12 05:04:33,205 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 14:05:05] 2025-10-12 05:04:33,205 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 14:05:05] 2025-10-12 05:04:33,205 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 14:05:05] 2025-10-12 05:04:33,205 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 14:05:05] 2025-10-12 05:04:33,205 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 14:05:05] 2025-10-12 05:04:33,205 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 14:05:05] 2025-10-12 05:04:33,205 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 14:05:05] 2025-10-12 05:04:33,205 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 14:05:05] 2025-10-12 05:04:33,205 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 14:05:05] 2025-10-12 05:04:33,205 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 14:05:05] 2025-10-12 05:04:33,205 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 14:05:05] 2025-10-12 05:04:33,205 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 14:05:05] 2025-10-12 05:04:33,205 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 14:05:05] 2025-10-12 05:04:33,205 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 14:05:05] 2025-10-12 05:04:33,205 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 14:05:05] 2025-10-12 05:04:33,205 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 14:05:05] 2025-10-12 05:04:33,205 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 14:05:05] 2025-10-12 05:04:33,205 | INFO     | job 6838851203 has completed (purged errors)
[2025-10-12 14:05:05] 2025-10-12 05:04:33,205 | INFO     | overall cleanup function is called
[2025-10-12 14:05:05] 2025-10-12 05:04:34,211 | INFO     | --- collectZombieJob: --- 10, [3181394]
[2025-10-12 14:05:05] 2025-10-12 05:04:34,211 | INFO     | zombie collector waiting for pid 3181394
[2025-10-12 14:05:05] 2025-10-12 05:04:34,211 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 14:05:05] 2025-10-12 05:04:34,211 | INFO     | collected zombie processes
[2025-10-12 14:05:05] 2025-10-12 05:04:34,211 | INFO     | will attempt to kill all subprocesses of pid=3181394
[2025-10-12 14:05:05] 2025-10-12 05:04:34,242 | INFO     | process IDs to be killed: [3181394] (in reverse order)
[2025-10-12 14:05:05] 2025-10-12 05:04:34,261 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 14:05:05] 2025-10-12 05:04:34,261 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 14:05:05] 2025-10-12 05:04:34,263 | INFO     | did not find any defunct processes belonging to 3181394
[2025-10-12 14:05:05] 2025-10-12 05:04:34,264 | INFO     | did not find any defunct processes belonging to 3181394
[2025-10-12 14:05:05] 2025-10-12 05:04:34,264 | INFO     | ready for new job
[2025-10-12 14:05:05] 2025-10-12 05:04:34,264 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 14:05:05] 2025-10-12 05:04:34,265 | INFO     | ***************************************
[2025-10-12 14:05:05] 2025-10-12 05:04:34,265 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 14:05:05] 2025-10-12 05:04:34,265 | INFO     | ***************************************
[2025-10-12 14:05:05] 2025-10-12 05:04:34,265 | INFO     | 
[2025-10-12 14:05:05] 2025-10-12 05:04:34,266 | INFO     | architecture information:
[2025-10-12 14:05:05] 2025-10-12 05:04:34,266 | INFO     | executing command: cat /etc/os-release
[2025-10-12 14:05:05] 2025-10-12 05:04:34,272 | INFO     | cat /etc/os-release:
[2025-10-12 14:05:05] NAME="CentOS Linux"
[2025-10-12 14:05:05] VERSION="7 (Core)"
[2025-10-12 14:05:05] ID="centos"
[2025-10-12 14:05:05] ID_LIKE="rhel fedora"
[2025-10-12 14:05:05] VERSION_ID="7"
[2025-10-12 14:05:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 14:05:05] ANSI_COLOR="0;31"
[2025-10-12 14:05:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 14:05:05] HOME_URL="https://www.centos.org/"
[2025-10-12 14:05:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 14:05:05] 
[2025-10-12 14:05:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 14:05:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 14:05:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 14:05:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 14:05:05] 
[2025-10-12 14:05:05] 2025-10-12 05:04:34,272 | INFO     | ***************************************
[2025-10-12 14:05:05] 2025-10-12 05:04:34,774 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-10-12 14:05:05] 2025-10-12 05:04:34,781 | INFO     | sufficient remaining disk space (282013466624 B)
[2025-10-12 14:05:05] 2025-10-12 05:04:34,782 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 14:05:05] 2025-10-12 05:04:34,782 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 14:05:05] 2025-10-12 05:04:34,782 | INFO     | update_server=False
[2025-10-12 14:05:05] 2025-10-12 05:04:34,782 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 14:05:05] 2025-10-12 05:04:34,782 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 14:05:05] 2025-10-12 05:04:34,782 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:05:05] 2025-10-12 05:04:34,782 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 14:05:05] 2025-10-12 05:04:34,914 | INFO     | all job control threads have been joined
[2025-10-12 14:05:05] 2025-10-12 05:04:35,231 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 14:05:05] 2025-10-12 05:04:35,232 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 14:05:05] 2025-10-12 05:04:35,232 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:05:05] 2025-10-12 05:04:35,232 | INFO     | will abort loop
[2025-10-12 14:05:05] 2025-10-12 05:04:35,240 | INFO     | all payload control threads have been joined
[2025-10-12 14:05:05] 2025-10-12 05:04:35,665 | INFO     | all data control threads have been joined
[2025-10-12 14:05:05] 2025-10-12 05:04:35,786 | INFO     | [job] queue monitor thread has finished
[2025-10-12 14:05:05] 2025-10-12 05:04:35,787 | INFO     | [job] retrieve thread has finished
[2025-10-12 14:05:05] 2025-10-12 05:04:35,908 | INFO     | [data] copytool_in thread has finished
[2025-10-12 14:05:05] 2025-10-12 05:04:35,919 | INFO     | [job] control thread has finished
[2025-10-12 14:05:05] 2025-10-12 05:04:36,098 | INFO     | [payload] validate_post thread has finished
[2025-10-12 14:05:05] 2025-10-12 05:04:36,236 | INFO     | [job] job monitor thread has finished
[2025-10-12 14:05:05] 2025-10-12 05:04:36,246 | INFO     | [payload] control thread has finished
[2025-10-12 14:05:05] 2025-10-12 05:04:36,580 | INFO     | [payload] failed_post thread has finished
[2025-10-12 14:05:05] 2025-10-12 05:04:36,671 | INFO     | [data] control thread has finished
[2025-10-12 14:05:05] 2025-10-12 05:04:36,686 | INFO     | [job] validate thread has finished
[2025-10-12 14:05:05] 2025-10-12 05:04:36,697 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 14:05:05] 2025-10-12 05:04:36,722 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 14:05:05] 2025-10-12 05:04:36,784 | INFO     | [data] copytool_out thread has finished
[2025-10-12 14:05:05] 2025-10-12 05:04:36,954 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 14:05:05] 2025-10-12 05:04:38,787 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 14:05:05] 2025-10-12 05:04:45,588 | INFO     | job.realtimelogging is not enabled
[2025-10-12 14:05:05] 2025-10-12 05:04:45,959 | INFO     | [monitor] cgroup control has ended
[2025-10-12 14:05:05] 2025-10-12 05:04:46,591 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 14:05:05] 2025-10-12 05:04:48,462 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140203649328960)>', '<ExcThread(monitor, started 140203150792448)>']
[2025-10-12 14:05:05] 2025-10-12 05:04:53,484 | INFO     | all workflow threads have been joined
[2025-10-12 14:05:05] 2025-10-12 05:04:53,485 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 14:05:05] 2025-10-12 05:04:53,485 | INFO     | traces error code: 0
[2025-10-12 14:05:05] 2025-10-12 05:04:53,485 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 14:05:05] 2025-10-12 05:05:05,426 | INFO     | PID=3174675 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 14:05:05] 2025-10-12 05:05:05,430 | INFO     | .. there are 3 such processes running
[2025-10-12 14:05:05] 2025-10-12 05:05:05,430 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 14:05:05] 2025-10-12 05:05:05,430 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 14:05:05] 2025-10-12 05:05:05,431 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 14:05:05] 2025-10-12 05:05:05,431 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 14:05:05] 2025-10-12 05:05:05,431 | INFO     | [monitor] control thread has ended
[2025-10-12 14:05:05] 2025-10-12 05:05:05,494 [wrapper] ==== pilot stdout END ====
[2025-10-12 14:05:05] 2025-10-12 05:05:05,495 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 14:05:05] 2025-10-12 05:05:05,496 [wrapper] pilotpid: 3174675
[2025-10-12 14:05:05] 2025-10-12 05:05:05,497 [wrapper] Pilot exit status: 0
[2025-10-12 14:05:05] 2025-10-12 05:05:05,501 [wrapper] pandaids: 6838851203
[2025-10-12 14:05:05] 2025-10-12 05:05:05,512 [wrapper] cleanup supervisor_pilot 3219575 3174676
[2025-10-12 14:05:05] 2025-10-12 05:05:05,513 [wrapper] Test setup, not cleaning
[2025-10-12 14:05:05] 2025-10-12 05:05:05,514 [wrapper] apfmon messages muted
[2025-10-12 14:05:05] 2025-10-12 05:05:05,516 [wrapper] ==== wrapper stdout END ====
[2025-10-12 14:05:05] 2025-10-12 05:05:05,517 [wrapper] ==== wrapper stderr END ====
[2025-10-12 14:05:05]  *** Error codes and diagnostics ***
[2025-10-12 14:05:05]     "exeErrorCode": 0,
[2025-10-12 14:05:05]     "exeErrorDiag": "",
[2025-10-12 14:05:05]     "pilotErrorCode": 0,
[2025-10-12 14:05:05]     "pilotErrorDiag": "",
[2025-10-12 14:05:05]  *** Listing of results directory ***
[2025-10-12 14:05:05] total 418084
[2025-10-12 14:05:05] -rw-r--r--. 1 boinc boinc    557409 Oct 12 04:02 pilot3.tar.gz
[2025-10-12 14:05:05] -rwx------. 1 boinc boinc     36292 Oct 12 04:34 runpilot2-wrapper.sh
[2025-10-12 14:05:05] -rw-r--r--. 1 boinc boinc      5112 Oct 12 04:34 queuedata.json
[2025-10-12 14:05:05] -rw-r--r--. 1 boinc boinc       100 Oct 12 12:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 14:05:05] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 12:55 run_atlas
[2025-10-12 14:05:05] -rw-r--r--. 1 boinc boinc       105 Oct 12 12:55 job.xml
[2025-10-12 14:05:05] -rw-r--r--. 2 boinc boinc 224376817 Oct 12 12:55 EVNT.46676267._002551.pool.root.1
[2025-10-12 14:05:05] -rw-r--r--. 2 boinc boinc     15120 Oct 12 12:55 start_atlas.sh
[2025-10-12 14:05:05] drwxrwx--x. 2 boinc boinc        68 Oct 12 12:55 shared
[2025-10-12 14:05:05] -rw-r--r--. 2 boinc boinc    569674 Oct 12 12:55 input.tar.gz
[2025-10-12 14:05:05] -rw-r--r--. 1 boinc boinc      9509 Oct 12 12:55 init_data.xml
[2025-10-12 14:05:05] -rw-r--r--. 1 boinc boinc         0 Oct 12 12:55 boinc_lockfile
[2025-10-12 14:05:05] -rw-r--r--. 1 boinc boinc      2550 Oct 12 12:55 pandaJob.out
[2025-10-12 14:05:05] -rw-------. 1 boinc boinc    975512 Oct 12 12:55 agis_schedconf.cvmfs.json
[2025-10-12 14:05:05] -rw-------. 1 boinc boinc   1560580 Oct 12 12:55 agis_ddmendpoints.agis.ALL.json
[2025-10-12 14:05:05] drwx------. 5 boinc boinc      4096 Oct 12 12:55 pilot3
[2025-10-12 14:05:05] -rw-------. 1 boinc boinc 198006022 Oct 12 14:04 HITS.46676269._063505.pool.root.1
[2025-10-12 14:05:05] -rw-------. 1 boinc boinc      1017 Oct 12 14:04 memory_monitor_summary.json
[2025-10-12 14:05:05] -rw-------. 1 boinc boinc    302489 Oct 12 14:04 log.46676269._063505.job.log.tgz.1
[2025-10-12 14:05:05] -rw-r--r--. 1 boinc boinc       529 Oct 12 14:04 boinc_task_state.xml
[2025-10-12 14:05:05] -rw-------. 1 boinc boinc      7759 Oct 12 14:04 heartbeat.json
[2025-10-12 14:05:05] -rw-r--r--. 1 boinc boinc      8192 Oct 12 14:04 boinc_mmap_file
[2025-10-12 14:05:05] -rw-r--r--. 1 boinc boinc        27 Oct 12 14:04 wrapper_checkpoint.txt
[2025-10-12 14:05:05] -rw-------. 1 boinc boinc        95 Oct 12 14:05 pilot_heartbeat.json
[2025-10-12 14:05:05] -rw-------. 1 boinc boinc       822 Oct 12 14:05 pilotlog.txt
[2025-10-12 14:05:05] -rw-------. 1 boinc boinc    620306 Oct 12 14:05 log.46676269._063505.job.log.1
[2025-10-12 14:05:05] -rw-------. 1 boinc boinc       357 Oct 12 14:05 output.list
[2025-10-12 14:05:05] -rw-r--r--. 1 boinc boinc       620 Oct 12 14:05 runtime_log
[2025-10-12 14:05:05] -rw-------. 1 boinc boinc    942080 Oct 12 14:05 result.tar.gz
[2025-10-12 14:05:05] -rw-------. 1 boinc boinc       642 Oct 12 14:05 zACNDmAXuR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmJOhNDmmtKl1n.diag
[2025-10-12 14:05:05] -rw-r--r--. 1 boinc boinc      8661 Oct 12 14:05 runtime_log.err
[2025-10-12 14:05:05] -rw-r--r--. 1 boinc boinc     22014 Oct 12 14:05 stderr.txt
[2025-10-12 14:05:05] HITS file was successfully produced:
[2025-10-12 14:05:05] -rw-------. 1 boinc boinc 198006022 Oct 12 14:04 shared/HITS.pool.root.1
[2025-10-12 14:05:05]  *** Contents of shared directory: ***
[2025-10-12 14:05:05] total 413984
[2025-10-12 14:05:05] -rw-r--r--. 2 boinc boinc 224376817 Oct 12 12:55 ATLAS.root_0
[2025-10-12 14:05:05] -rw-r--r--. 2 boinc boinc     15120 Oct 12 12:55 start_atlas.sh
[2025-10-12 14:05:05] -rw-r--r--. 2 boinc boinc    569674 Oct 12 12:55 input.tar.gz
[2025-10-12 14:05:05] -rw-------. 1 boinc boinc 198006022 Oct 12 14:04 HITS.pool.root.1
[2025-10-12 14:05:05] -rw-------. 1 boinc boinc    942080 Oct 12 14:05 result.tar.gz
14:05:06 (3170913): run_atlas exited; CPU time 21873.826535
14:05:06 (3170913): called boinc_finish(0)

</stderr_txt>
]]>

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