Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:29:25 (3127003): wrapper (7.7.26015): starting
15:29:25 (3127003): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 15:29:25] Arguments: --nthreads 4
[2025-10-13 15:29:25] Threads: 4
[2025-10-13 15:29:25] Checking for CVMFS
[2025-10-13 15:29:25] No cvmfs_config command found, will try listing directly
[2025-10-13 15:29:25] CVMFS is ok
[2025-10-13 15:29:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 15:29:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 15:29:25] Further information can be found at the LHC@home message board.
[2025-10-13 15:29:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 15:29:25] Checking for apptainer binary...
[2025-10-13 15:29:25] which: no apptainer in ((null))
[2025-10-13 15:29:25] apptainer is not installed, using version from CVMFS
[2025-10-13 15:29:25] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 15:29:25] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut09.grid.cesnet.cz
[2025-10-13 15:29:25] apptainer works
[2025-10-13 15:29:25] Set ATHENA_PROC_NUMBER=4
[2025-10-13 15:29:25] Set ATHENA_CORE_NUMBER=4
[2025-10-13 15:29:25] Starting ATLAS job with PandaID=6838775080
[2025-10-13 15:29:25] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:53:32 (3398945): wrapper (7.7.26015): starting
18:53:32 (3398945): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 18:53:32] Arguments: --nthreads 4
[2025-10-13 18:53:32] Threads: 4
[2025-10-13 18:53:32] This job has been restarted, cleaning up previous attempt
[2025-10-13 18:53:32] Checking for CVMFS
[2025-10-13 18:53:32] No cvmfs_config command found, will try listing directly
[2025-10-13 18:53:32] CVMFS is ok
[2025-10-13 18:53:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 18:53:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 18:53:33] Further information can be found at the LHC@home message board.
[2025-10-13 18:53:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 18:53:33] Checking for apptainer binary...
[2025-10-13 18:53:33] which: no apptainer in ((null))
[2025-10-13 18:53:33] apptainer is not installed, using version from CVMFS
[2025-10-13 18:53:33] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 18:53:33] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut09.grid.cesnet.cz
[2025-10-13 18:53:33] apptainer works
[2025-10-13 18:53:33] Set ATHENA_PROC_NUMBER=4
[2025-10-13 18:53:33] Set ATHENA_CORE_NUMBER=4
[2025-10-13 18:53:33] Starting ATLAS job with PandaID=6838775080
[2025-10-13 18:53:33] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 22:01:44]  *** The last 200 lines of the pilot log: ***
[2025-10-13 22:01:44] 2025-10-13 19:44:32,301 | INFO     | fitting pss+swap vs Time
[2025-10-13 22:01:44] 2025-10-13 19:44:32,301 | INFO     | sum of square deviations: 1470248962.0
[2025-10-13 22:01:44] 2025-10-13 19:44:32,302 | INFO     | sum of deviations: -3313293476.5000057
[2025-10-13 22:01:44] 2025-10-13 19:44:32,302 | INFO     | mean x: 1760379545.5
[2025-10-13 22:01:44] 2025-10-13 19:44:32,302 | INFO     | mean y: 2320103.994047619
[2025-10-13 22:01:44] 2025-10-13 19:44:32,303 | INFO     | -- intersect: 3969440105.4494166
[2025-10-13 22:01:44] 2025-10-13 19:44:32,303 | INFO     | intersect: 3969440105.4494166
[2025-10-13 22:01:44] 2025-10-13 19:44:32,303 | INFO     | chi2: 2.005694465907447
[2025-10-13 22:01:44] 2025-10-13 19:44:32,303 | INFO     | sum of square deviations: 1342841922.0
[2025-10-13 22:01:44] 2025-10-13 19:44:32,304 | INFO     | sum of deviations: 7028295072.000008
[2025-10-13 22:01:44] 2025-10-13 19:44:32,304 | INFO     | mean x: 1760379393.0
[2025-10-13 22:01:44] 2025-10-13 19:44:32,304 | INFO     | mean y: 2332185.0490797544
[2025-10-13 22:01:44] 2025-10-13 19:44:32,304 | INFO     | -- intersect: -9211310619.790508
[2025-10-13 22:01:44] 2025-10-13 19:44:32,305 | INFO     | intersect: -9211310619.790508
[2025-10-13 22:01:44] 2025-10-13 19:44:32,305 | INFO     | chi2: 1.2392742333452162
[2025-10-13 22:01:44] 2025-10-13 19:44:32,305 | INFO     | current chi2=1.2392742333452162 (change=38.21221255728375 %)
[2025-10-13 22:01:44] 2025-10-13 19:44:32,305 | INFO     | sum of square deviations: 1223016419.5
[2025-10-13 22:01:44] 2025-10-13 19:44:32,306 | INFO     | sum of deviations: 6877078603.500001
[2025-10-13 22:01:44] 2025-10-13 19:44:32,306 | INFO     | mean x: 1760379240.5
[2025-10-13 22:01:44] 2025-10-13 19:44:32,306 | INFO     | mean y: 2331992.5506329113
[2025-10-13 22:01:44] 2025-10-13 19:44:32,306 | INFO     | -- intersect: -9896362919.360264
[2025-10-13 22:01:44] 2025-10-13 19:44:32,307 | INFO     | intersect: -9896362919.360264
[2025-10-13 22:01:44] 2025-10-13 19:44:32,307 | INFO     | chi2: 1.240192555102064
[2025-10-13 22:01:44] 2025-10-13 19:44:32,307 | INFO     | current chi2=1.240192555102064 (change=-0.07410157753130624 %)
[2025-10-13 22:01:44] 2025-10-13 19:44:32,307 | INFO     | right removable region: 157
[2025-10-13 22:01:44] 2025-10-13 19:44:32,307 | INFO     | sum of square deviations: 1342841922.0
[2025-10-13 22:01:44] 2025-10-13 19:44:32,308 | INFO     | sum of deviations: -21182757337.0
[2025-10-13 22:01:44] 2025-10-13 19:44:32,308 | INFO     | mean x: 1760379698.0
[2025-10-13 22:01:44] 2025-10-13 19:44:32,308 | INFO     | mean y: 2341107.018404908
[2025-10-13 22:01:44] 2025-10-13 19:44:32,309 | INFO     | -- intersect: 27771578388.63147
[2025-10-13 22:01:44] 2025-10-13 19:44:32,309 | INFO     | intersect: 27771578388.63147
[2025-10-13 22:01:44] 2025-10-13 19:44:32,309 | INFO     | chi2: 0.8568710494726832
[2025-10-13 22:01:44] 2025-10-13 19:44:32,309 | INFO     | current chi2=0.8568710494726832 (change=57.27808676557301 %)
[2025-10-13 22:01:44] 2025-10-13 19:44:32,309 | INFO     | sum of square deviations: 1223016419.5
[2025-10-13 22:01:44] 2025-10-13 19:44:32,310 | INFO     | sum of deviations: -16985952548.5
[2025-10-13 22:01:44] 2025-10-13 19:44:32,310 | INFO     | mean x: 1760379850.5
[2025-10-13 22:01:44] 2025-10-13 19:44:32,310 | INFO     | mean y: 2335758.335443038
[2025-10-13 22:01:44] 2025-10-13 19:44:32,310 | INFO     | -- intersect: 24451499425.45375
[2025-10-13 22:01:44] 2025-10-13 19:44:32,311 | INFO     | intersect: 24451499425.45375
[2025-10-13 22:01:44] 2025-10-13 19:44:32,311 | INFO     | chi2: 0.8446340833784325
[2025-10-13 22:01:44] 2025-10-13 19:44:32,311 | INFO     | current chi2=0.8446340833784325 (change=1.4280989072721433 %)
[2025-10-13 22:01:44] 2025-10-13 19:44:32,311 | INFO     | left removable region: 20
[2025-10-13 22:01:44] 2025-10-13 19:44:32,311 | INFO     | sum of square deviations: 797291228.0
[2025-10-13 22:01:44] 2025-10-13 19:44:32,312 | INFO     | sum of deviations: 1428366361.9999998
[2025-10-13 22:01:44] 2025-10-13 19:44:32,312 | INFO     | mean x: 1760379820.0
[2025-10-13 22:01:44] 2025-10-13 19:44:32,312 | INFO     | mean y: 2336603.4452554747
[2025-10-13 22:01:44] 2025-10-13 19:44:32,312 | INFO     | -- intersect: -3151426075.6439652
[2025-10-13 22:01:44] 2025-10-13 19:44:32,312 | INFO     | intersect: -3151426075.6439652
[2025-10-13 22:01:44] 2025-10-13 19:44:32,313 | INFO     | chi2: 0.0005371051885065156
[2025-10-13 22:01:44] 2025-10-13 19:44:32,313 | INFO     | -- intersect: -3151426075.6439652
[2025-10-13 22:01:44] 2025-10-13 19:44:32,313 | INFO     | current memory leak: 1.79 B/s (using 137 data points, chi2=0.00)
[2025-10-13 22:01:44] 2025-10-13 19:44:32,313 | INFO     | could have reported an average CPU frequency of 2657 MHz (9 samples)
[2025-10-13 22:01:44] 2025-10-13 19:44:32,314 | INFO     | ..............................
[2025-10-13 22:01:44] 2025-10-13 19:44:32,314 | INFO     | . Timing measurements:
[2025-10-13 22:01:44] 2025-10-13 19:44:32,314 | INFO     | . get job = 0 s
[2025-10-13 22:01:44] 2025-10-13 19:44:32,314 | INFO     | . initial setup = 1 s
[2025-10-13 22:01:44] 2025-10-13 19:44:32,314 | INFO     | . payload setup = 6 s
[2025-10-13 22:01:44] 2025-10-13 19:44:32,314 | INFO     | . stage-in = 0 s
[2025-10-13 22:01:44] 2025-10-13 19:44:32,314 | INFO     | . payload execution = 10211 s
[2025-10-13 22:01:44] 2025-10-13 19:44:32,314 | INFO     | . stage-out = 0 s
[2025-10-13 22:01:44] 2025-10-13 19:44:32,314 | INFO     | . log creation = 0 s
[2025-10-13 22:01:44] 2025-10-13 19:44:32,314 | INFO     | ..............................
[2025-10-13 22:01:44] 2025-10-13 19:44:32,418 | INFO     | 
[2025-10-13 22:01:44] 2025-10-13 19:44:32,418 | INFO     | job summary report
[2025-10-13 22:01:44] 2025-10-13 19:44:32,418 | INFO     | --------------------------------------------------
[2025-10-13 22:01:44] 2025-10-13 19:44:32,418 | INFO     | PanDA job id: 6838775080
[2025-10-13 22:01:44] 2025-10-13 19:44:32,418 | INFO     | task id: 46676269
[2025-10-13 22:01:44] 2025-10-13 19:44:32,419 | INFO     | errors: (none)
[2025-10-13 22:01:44] 2025-10-13 19:44:32,419 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 22:01:44] 2025-10-13 19:44:32,419 | INFO     | pilot state: finished 
[2025-10-13 22:01:44] 2025-10-13 19:44:32,419 | INFO     | transexitcode: 0
[2025-10-13 22:01:44] 2025-10-13 19:44:32,419 | INFO     | exeerrorcode: 0
[2025-10-13 22:01:44] 2025-10-13 19:44:32,419 | INFO     | exeerrordiag: 
[2025-10-13 22:01:44] 2025-10-13 19:44:32,419 | INFO     | exitcode: 0
[2025-10-13 22:01:44] 2025-10-13 19:44:32,419 | INFO     | exitmsg: OK
[2025-10-13 22:01:44] 2025-10-13 19:44:32,419 | INFO     | cpuconsumptiontime: 39359 s
[2025-10-13 22:01:44] 2025-10-13 19:44:32,419 | INFO     | nevents: 400
[2025-10-13 22:01:44] 2025-10-13 19:44:32,419 | INFO     | neventsw: 0
[2025-10-13 22:01:44] 2025-10-13 19:44:32,419 | INFO     | pid: 3410385
[2025-10-13 22:01:44] 2025-10-13 19:44:32,420 | INFO     | pgrp: 3410385
[2025-10-13 22:01:44] 2025-10-13 19:44:32,420 | INFO     | corecount: 4
[2025-10-13 22:01:44] 2025-10-13 19:44:32,420 | INFO     | event service: False
[2025-10-13 22:01:44] 2025-10-13 19:44:32,420 | INFO     | sizes: {0: 2348697, 1: 2348896, 5: 2349158, 11: 2349214, 10221: 2377964, 10224: 2386984, 10226: 2387168, 10232: 2387426}
[2025-10-13 22:01:44] 2025-10-13 19:44:32,420 | INFO     | --------------------------------------------------
[2025-10-13 22:01:44] 2025-10-13 19:44:32,420 | INFO     | 
[2025-10-13 22:01:44] 2025-10-13 19:44:32,420 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/0
[2025-10-13 22:01:44] 2025-10-13 19:44:32,444 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 22:01:44] 2025-10-13 19:44:32,444 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 22:01:44] 2025-10-13 19:44:32,444 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 22:01:44] 2025-10-13 19:44:32,444 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 22:01:44] 2025-10-13 19:44:32,445 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 22:01:44] 2025-10-13 19:44:32,445 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 22:01:44] 2025-10-13 19:44:32,445 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 22:01:44] 2025-10-13 19:44:32,445 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 22:01:44] 2025-10-13 19:44:32,445 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 22:01:44] 2025-10-13 19:44:32,445 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 22:01:44] 2025-10-13 19:44:32,445 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 22:01:44] 2025-10-13 19:44:32,445 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 22:01:44] 2025-10-13 19:44:32,445 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 22:01:44] 2025-10-13 19:44:32,445 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 22:01:44] 2025-10-13 19:44:32,445 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 22:01:44] 2025-10-13 19:44:32,445 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 22:01:44] 2025-10-13 19:44:32,446 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 22:01:44] 2025-10-13 19:44:32,446 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 22:01:44] 2025-10-13 19:44:32,446 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 22:01:44] 2025-10-13 19:44:32,446 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 22:01:44] 2025-10-13 19:44:32,446 | INFO     | job 6838775080 has completed (purged errors)
[2025-10-13 22:01:44] 2025-10-13 19:44:32,446 | INFO     | overall cleanup function is called
[2025-10-13 22:01:44] 2025-10-13 19:44:33,451 | INFO     | --- collectZombieJob: --- 10, [3410385]
[2025-10-13 22:01:44] 2025-10-13 19:44:33,451 | INFO     | zombie collector waiting for pid 3410385
[2025-10-13 22:01:44] 2025-10-13 19:44:33,451 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 22:01:44] 2025-10-13 19:44:33,451 | INFO     | collected zombie processes
[2025-10-13 22:01:44] 2025-10-13 19:44:33,451 | INFO     | will attempt to kill all subprocesses of pid=3410385
[2025-10-13 22:01:44] 2025-10-13 19:44:33,834 | INFO     | process IDs to be killed: [3410385] (in reverse order)
[2025-10-13 22:01:44] 2025-10-13 19:44:33,947 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 22:01:44] 2025-10-13 19:44:33,948 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 22:01:44] 2025-10-13 19:44:33,961 | INFO     | did not find any defunct processes belonging to 3410385
[2025-10-13 22:01:44] 2025-10-13 19:44:33,973 | INFO     | did not find any defunct processes belonging to 3410385
[2025-10-13 22:01:44] 2025-10-13 19:44:33,973 | INFO     | ready for new job
[2025-10-13 22:01:44] 2025-10-13 19:44:33,973 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 22:01:44] 2025-10-13 19:44:33,976 | INFO     | ***************************************
[2025-10-13 22:01:44] 2025-10-13 19:44:33,976 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 22:01:44] 2025-10-13 19:44:33,976 | INFO     | ***************************************
[2025-10-13 22:01:44] 2025-10-13 19:44:33,976 | INFO     | 
[2025-10-13 22:01:44] 2025-10-13 19:44:33,980 | INFO     | architecture information:
[2025-10-13 22:01:44] 2025-10-13 19:44:33,980 | INFO     | executing command: cat /etc/os-release
[2025-10-13 22:01:44] 2025-10-13 19:44:33,995 | INFO     | cat /etc/os-release:
[2025-10-13 22:01:44] NAME="CentOS Linux"
[2025-10-13 22:01:44] VERSION="7 (Core)"
[2025-10-13 22:01:44] ID="centos"
[2025-10-13 22:01:44] ID_LIKE="rhel fedora"
[2025-10-13 22:01:44] VERSION_ID="7"
[2025-10-13 22:01:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 22:01:44] ANSI_COLOR="0;31"
[2025-10-13 22:01:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 22:01:44] HOME_URL="https://www.centos.org/"
[2025-10-13 22:01:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 22:01:44] 
[2025-10-13 22:01:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 22:01:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 22:01:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 22:01:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 22:01:44] 
[2025-10-13 22:01:44] 2025-10-13 19:44:33,996 | INFO     | ***************************************
[2025-10-13 22:01:44] 2025-10-13 19:44:34,499 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/0
[2025-10-13 22:01:44] 2025-10-13 19:44:34,517 | INFO     | sufficient remaining disk space (693672869888 B)
[2025-10-13 22:01:44] 2025-10-13 19:44:34,517 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 22:01:44] 2025-10-13 19:44:34,518 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 22:01:44] 2025-10-13 19:44:34,518 | INFO     | update_server=False
[2025-10-13 22:01:44] 2025-10-13 19:44:34,518 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 22:01:44] 2025-10-13 19:44:34,906 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 22:01:44] 2025-10-13 19:44:34,907 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 22:01:44] 2025-10-13 19:44:34,908 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 22:01:44] 2025-10-13 19:44:34,908 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 22:01:44] 2025-10-13 19:44:34,908 | INFO     | will abort loop
[2025-10-13 22:01:44] 2025-10-13 19:44:35,479 | INFO     | all data control threads have been joined
[2025-10-13 22:01:44] 2025-10-13 19:44:35,523 | INFO     | [job] retrieve thread has finished
[2025-10-13 22:01:44] 2025-10-13 19:44:35,805 | INFO     | [payload] failed_post thread has finished
[2025-10-13 22:01:44] 2025-10-13 19:44:35,912 | INFO     | [job] validate thread has finished
[2025-10-13 22:01:44] 2025-10-13 19:44:35,913 | INFO     | [job] job monitor thread has finished
[2025-10-13 22:01:44] 2025-10-13 19:44:35,966 | INFO     | [payload] validate_post thread has finished
[2025-10-13 22:01:44] 2025-10-13 19:44:35,994 | INFO     | all payload control threads have been joined
[2025-10-13 22:01:44] 2025-10-13 19:44:35,994 | INFO     | all job control threads have been joined
[2025-10-13 22:01:44] 2025-10-13 19:44:36,060 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 22:01:44] 2025-10-13 19:44:36,388 | INFO     | [data] copytool_in thread has finished
[2025-10-13 22:01:44] 2025-10-13 19:44:36,431 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 22:01:44] 2025-10-13 19:44:36,485 | INFO     | [data] control thread has finished
[2025-10-13 22:01:44] 2025-10-13 19:44:36,563 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 22:01:44] 2025-10-13 19:44:36,908 | INFO     | [data] copytool_out thread has finished
[2025-10-13 22:01:44] 2025-10-13 19:44:37,000 | INFO     | [payload] control thread has finished
[2025-10-13 22:01:44] 2025-10-13 19:44:37,001 | INFO     | [job] control thread has finished
[2025-10-13 22:01:44] 2025-10-13 19:44:37,066 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 22:01:44] 2025-10-13 19:44:37,429 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 22:01:44] 2025-10-13 19:44:38,433 | INFO     | [job] queue monitor thread has finished
[2025-10-13 22:01:44] 2025-10-13 19:44:41,071 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 22:01:44] 2025-10-13 19:44:45,261 | INFO     | job.realtimelogging is not enabled
[2025-10-13 22:01:44] 2025-10-13 19:44:46,267 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 22:01:44] 2025-10-13 19:45:01,133 | INFO     | [monitor] cgroup control has ended
[2025-10-13 22:01:44] 2025-10-13 19:45:01,587 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22611913926464)>', '<ExcThread(monitor, started 22611673179904)>']
[2025-10-13 22:01:44] 2025-10-13 19:45:05,161 | INFO     | PID=3403308 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 22:01:44] 2025-10-13 19:45:05,161 | INFO     | .. there are 5 such processes running
[2025-10-13 22:01:44] 2025-10-13 19:45:05,161 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 22:01:44] 2025-10-13 19:45:05,162 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 22:01:44] 2025-10-13 19:45:05,162 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 22:01:44] 2025-10-13 19:45:05,162 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 22:01:44] 2025-10-13 19:45:05,162 | INFO     | [monitor] control thread has ended
[2025-10-13 22:01:44] 2025-10-13 19:45:06,612 | INFO     | all workflow threads have been joined
[2025-10-13 22:01:44] 2025-10-13 19:45:06,612 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 22:01:44] 2025-10-13 19:45:06,613 | INFO     | traces error code: 0
[2025-10-13 22:01:44] 2025-10-13 19:45:06,613 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 22:01:44] 2025-10-13 19:45:06,804 [wrapper] ==== pilot stdout END ====
[2025-10-13 22:01:44] 2025-10-13 19:45:06,807 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 22:01:44] 2025-10-13 19:45:06,810 [wrapper] pilotpid: 3403308
[2025-10-13 22:01:44] 2025-10-13 19:45:06,813 [wrapper] Pilot exit status: 0
[2025-10-13 22:01:44] 2025-10-13 19:45:06,824 [wrapper] pandaids: 6838775080 6838775080
[2025-10-13 22:01:44] 2025-10-13 19:45:06,903 [wrapper] cleanup supervisor_pilot 3737314 3403309
[2025-10-13 22:01:44] 2025-10-13 19:45:06,906 [wrapper] Test setup, not cleaning
[2025-10-13 22:01:44] 2025-10-13 19:45:06,910 [wrapper] apfmon messages muted
[2025-10-13 22:01:44] 2025-10-13 19:45:06,913 [wrapper] ==== wrapper stdout END ====
[2025-10-13 22:01:44] 2025-10-13 19:45:06,915 [wrapper] ==== wrapper stderr END ====
[2025-10-13 22:01:44]  *** Error codes and diagnostics ***
[2025-10-13 22:01:44]     "exeErrorCode": 0,
[2025-10-13 22:01:44]     "exeErrorDiag": "",
[2025-10-13 22:01:44]     "pilotErrorCode": 0,
[2025-10-13 22:01:44]     "pilotErrorDiag": "",
[2025-10-13 22:01:44]  *** Listing of results directory ***
[2025-10-13 22:01:44] total 629708
[2025-10-13 22:01:44] drwx------ 5 boinc boinc      4096 Oct  7 09:00 pilot3
[2025-10-13 22:01:44] -rw-r--r-- 1 boinc boinc    557409 Oct 11 20:14 pilot3.tar.gz
[2025-10-13 22:01:44] -rw-r--r-- 1 boinc boinc      5112 Oct 11 20:34 queuedata.json
[2025-10-13 22:01:44] -rwx------ 1 boinc boinc     36292 Oct 11 20:35 runpilot2-wrapper.sh
[2025-10-13 22:01:44] -rw-r--r-- 1 boinc boinc       100 Oct 13 15:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 22:01:44] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 15:29 run_atlas
[2025-10-13 22:01:44] -rw-r--r-- 1 boinc boinc       105 Oct 13 15:29 job.xml
[2025-10-13 22:01:44] -rw-r--r-- 3 boinc boinc 221991343 Oct 13 15:29 EVNT.46676267._002522.pool.root.1
[2025-10-13 22:01:44] -rw-r--r-- 3 boinc boinc 221991343 Oct 13 15:29 ATLAS.root_0
[2025-10-13 22:01:44] -rw-r--r-- 2 boinc boinc     15120 Oct 13 15:29 start_atlas.sh
[2025-10-13 22:01:44] drwxrwx--x 2 boinc boinc      4096 Oct 13 15:29 shared
[2025-10-13 22:01:44] -rw-r--r-- 2 boinc boinc    569683 Oct 13 15:29 input.tar.gz
[2025-10-13 22:01:44] -rw-r--r-- 1 boinc boinc         0 Oct 13 15:29 boinc_lockfile
[2025-10-13 22:01:44] -rw-r--r-- 1 boinc boinc      2550 Oct 13 18:53 pandaJob.out
[2025-10-13 22:01:44] -rw------- 1 boinc boinc    972783 Oct 13 18:53 agis_schedconf.cvmfs.json
[2025-10-13 22:01:44] -rw------- 1 boinc boinc   1560580 Oct 13 18:53 agis_ddmendpoints.agis.ALL.json
[2025-10-13 22:01:44] -rw-r--r-- 1 boinc boinc      6641 Oct 13 21:30 init_data.xml
[2025-10-13 22:01:44] -rw------- 1 boinc boinc 193319472 Oct 13 21:43 HITS.46676269._062768.pool.root.1
[2025-10-13 22:01:44] -rw-r--r-- 1 boinc boinc       529 Oct 13 21:43 boinc_task_state.xml
[2025-10-13 22:01:44] -rw------- 1 boinc boinc      1047 Oct 13 21:44 memory_monitor_summary.json
[2025-10-13 22:01:44] -rw------- 1 boinc boinc    353668 Oct 13 21:44 log.46676269._062768.job.log.tgz.1
[2025-10-13 22:01:44] -rw------- 1 boinc boinc        97 Oct 13 21:44 pilot_heartbeat.json
[2025-10-13 22:01:44] -rw------- 1 boinc boinc      7856 Oct 13 21:44 heartbeat.json
[2025-10-13 22:01:44] -rw------- 1 boinc boinc      5091 Oct 13 21:45 pilotlog.txt
[2025-10-13 22:01:44] -rw------- 1 boinc boinc   1454865 Oct 13 21:45 log.46676269._062768.job.log.1
[2025-10-13 22:01:44] -rw------- 1 boinc boinc       357 Oct 13 21:45 output.list
[2025-10-13 22:01:44] -rw-r--r-- 1 boinc boinc       620 Oct 13 21:45 runtime_log
[2025-10-13 22:01:44] -rw------- 1 boinc boinc   1822720 Oct 13 21:45 result.tar.gz
[2025-10-13 22:01:44] -rw------- 1 boinc boinc       793 Oct 13 21:45 swoNDmxbtR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFHhNDmWnWpZn.diag
[2025-10-13 22:01:44] -rw-r--r-- 1 boinc boinc      9147 Oct 13 21:45 runtime_log.err
[2025-10-13 22:01:44] -rw-r--r-- 1 boinc boinc        27 Oct 13 22:01 wrapper_checkpoint.txt
[2025-10-13 22:01:44] -rw-r--r-- 1 boinc boinc      8192 Oct 13 22:01 boinc_mmap_file
[2025-10-13 22:01:44] -rw-r--r-- 1 boinc boinc     22619 Oct 13 22:01 stderr.txt
[2025-10-13 22:01:44] HITS file was successfully produced:
[2025-10-13 22:01:44] -rw------- 1 boinc boinc 193319472 Oct 13 21:43 shared/HITS.pool.root.1
[2025-10-13 22:01:44]  *** Contents of shared directory: ***
[2025-10-13 22:01:44] total 407944
[2025-10-13 22:01:44] -rw-r--r-- 3 boinc boinc 221991343 Oct 13 15:29 ATLAS.root_0
[2025-10-13 22:01:44] -rw-r--r-- 2 boinc boinc     15120 Oct 13 15:29 start_atlas.sh
[2025-10-13 22:01:44] -rw-r--r-- 2 boinc boinc    569683 Oct 13 15:29 input.tar.gz
[2025-10-13 22:01:44] -rw------- 1 boinc boinc 193319472 Oct 13 21:43 HITS.pool.root.1
[2025-10-13 22:01:44] -rw------- 1 boinc boinc   1822720 Oct 13 21:45 result.tar.gz
22:01:46 (3398945): run_atlas exited; CPU time 39838.402329
22:01:46 (3398945): called boinc_finish(0)

</stderr_txt>
]]>

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