Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:36:30 (4069230): wrapper (7.7.26015): starting
23:36:30 (4069230): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 23:36:30] Arguments: --nthreads 12
[2025-10-11 23:36:30] Threads: 12
[2025-10-11 23:36:30] Checking for CVMFS
[2025-10-11 23:36:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 23:36:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 23:36:30] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 23:36:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 23:36:31] 2.13.2.0 3683012 12255 152040 151606 3 196 36740560 40960000 8194 16776704 0 136078088 99.850 55052376 32592 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 23:36:31] CVMFS is ok
[2025-10-11 23:36:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 23:36:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 23:36:31] Further information can be found at the LHC@home message board.
[2025-10-11 23:36:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 23:36:31] Checking for apptainer binary...
[2025-10-11 23:36:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 23:36:31] Running /usr/bin/apptainer --version
[2025-10-11 23:36:31] apptainer version 1.4.3-1.el9
[2025-10-11 23:36:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 23:36:31] c8-7-4.aglt2.org
[2025-10-11 23:36:31] apptainer works
[2025-10-11 23:36:31] Set ATHENA_PROC_NUMBER=12
[2025-10-11 23:36:31] Set ATHENA_CORE_NUMBER=12
[2025-10-11 23:36:31] Starting ATLAS job with PandaID=6838775225
[2025-10-11 23:36:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 00:13:12]  *** The last 200 lines of the pilot log: ***
[2025-10-12 00:13:12] 2025-10-12 04:12:18,579 | INFO     | preparing for final server update for job 6838775225 in state='finished'
[2025-10-12 00:13:12] 2025-10-12 04:12:18,579 | INFO     | this job has now completed (state=finished)
[2025-10-12 00:13:12] 2025-10-12 04:12:18,579 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 00:13:12] 2025-10-12 04:12:18,579 | INFO     | log transfer has been attempted: DONE
[2025-10-12 00:13:12] 2025-10-12 04:12:18,579 | INFO     | job 6838775225 has finished - writing final server update
[2025-10-12 00:13:12] 2025-10-12 04:12:18,579 | INFO     | total number of processed events: 400 (read)
[2025-10-12 00:13:12] 2025-10-12 04:12:18,580 | INFO     | executing command: lscpu
[2025-10-12 00:13:12] 2025-10-12 04:12:18,750 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 00:13:12] 2025-10-12 04:12:19,801 | INFO     | time since job start (2139s) is within the limit (172800.0s)
[2025-10-12 00:13:12] 2025-10-12 04:12:20,666 | INFO     | monitor loop #162: job 0:6838775225 is in state 'finished'
[2025-10-12 00:13:12] 2025-10-12 04:12:20,666 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 00:13:12] 2025-10-12 04:12:21,808 | INFO     | time since job start (2141s) is within the limit (172800.0s)
[2025-10-12 00:13:12] 2025-10-12 04:12:23,171 | INFO     | monitor loop #163: job 0:6838775225 is in state 'finished'
[2025-10-12 00:13:12] 2025-10-12 04:12:23,171 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 00:13:12] 2025-10-12 04:12:23,780 | INFO     | PID=4072946 has CPU usage=8.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 00:13:12] 2025-10-12 04:12:23,780 | INFO     | .. there are 18 such processes running
[2025-10-12 00:13:12] 2025-10-12 04:12:24,781 | INFO     | time since job start (2144s) is within the limit (172800.0s)
[2025-10-12 00:13:12] 2025-10-12 04:12:25,676 | INFO     | monitor loop #164: job 0:6838775225 is in state 'finished'
[2025-10-12 00:13:12] 2025-10-12 04:12:25,676 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 00:13:12] 2025-10-12 04:12:26,788 | INFO     | time since job start (2146s) is within the limit (172800.0s)
[2025-10-12 00:13:12] 2025-10-12 04:12:28,181 | INFO     | monitor loop #165: job 0:6838775225 is in state 'finished'
[2025-10-12 00:13:12] 2025-10-12 04:12:28,181 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 00:13:12] 2025-10-12 04:12:28,795 | INFO     | time since job start (2148s) is within the limit (172800.0s)
[2025-10-12 00:13:12] 2025-10-12 04:12:30,686 | INFO     | monitor loop #166: job 0:6838775225 is in state 'finished'
[2025-10-12 00:13:12] 2025-10-12 04:12:30,686 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 00:13:12] 2025-10-12 04:12:30,803 | INFO     | time since job start (2150s) is within the limit (172800.0s)
[2025-10-12 00:13:12] 2025-10-12 04:12:32,810 | INFO     | time since job start (2152s) is within the limit (172800.0s)
[2025-10-12 00:13:12] 2025-10-12 04:12:33,193 | INFO     | monitor loop #167: job 0:6838775225 is in state 'finished'
[2025-10-12 00:13:12] 2025-10-12 04:12:33,193 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 00:13:12] 2025-10-12 04:12:34,817 | INFO     | time since job start (2154s) is within the limit (172800.0s)
[2025-10-12 00:13:12] 2025-10-12 04:12:35,698 | INFO     | monitor loop #168: job 0:6838775225 is in state 'finished'
[2025-10-12 00:13:12] 2025-10-12 04:12:35,698 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 00:13:12] 2025-10-12 04:12:36,824 | INFO     | time since job start (2156s) is within the limit (172800.0s)
[2025-10-12 00:13:12] 2025-10-12 04:12:37,874 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 00:13:12] 2025-10-12 04:12:37,879 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.186499999992
[2025-10-12 00:13:12] 2025-10-12 04:12:37,892 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6838775225/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 00:13:12] 2025-10-12 04:12:37,893 | INFO     | extracted standard info from prmon json
[2025-10-12 00:13:12] 2025-10-12 04:12:37,893 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 00:13:12] 2025-10-12 04:12:37,893 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 00:13:12] 2025-10-12 04:12:37,893 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 00:13:12] 2025-10-12 04:12:37,893 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 00:13:12] 2025-10-12 04:12:37,894 | INFO     | fitting pss+swap vs Time
[2025-10-12 00:13:12] 2025-10-12 04:12:37,894 | INFO     | sum of square deviations: 6798267.0
[2025-10-12 00:13:12] 2025-10-12 04:12:37,894 | INFO     | sum of deviations: 325502008.50000006
[2025-10-12 00:13:12] 2025-10-12 04:12:37,894 | INFO     | mean x: 1760241353.5
[2025-10-12 00:13:12] 2025-10-12 04:12:37,894 | INFO     | mean y: 2384647.464285714
[2025-10-12 00:13:12] 2025-10-12 04:12:37,894 | INFO     | -- intersect: -84278226280.14545
[2025-10-12 00:13:12] 2025-10-12 04:12:37,895 | INFO     | intersect: -84278226280.14545
[2025-10-12 00:13:12] 2025-10-12 04:12:37,895 | INFO     | chi2: 0.006132455188956379
[2025-10-12 00:13:12] 2025-10-12 04:12:37,895 | INFO     | -- intersect: -84278226280.14545
[2025-10-12 00:13:12] 2025-10-12 04:12:37,895 | INFO     | current memory leak: 47.88 B/s (using 28 data points, chi2=0.01)
[2025-10-12 00:13:12] 2025-10-12 04:12:37,895 | INFO     | could have reported an average CPU frequency of 3703 MHz (5 samples)
[2025-10-12 00:13:12] 2025-10-12 04:12:37,895 | INFO     | ..............................
[2025-10-12 00:13:12] 2025-10-12 04:12:37,895 | INFO     | . Timing measurements:
[2025-10-12 00:13:12] 2025-10-12 04:12:37,895 | INFO     | . get job = 0 s
[2025-10-12 00:13:12] 2025-10-12 04:12:37,895 | INFO     | . initial setup = 2 s
[2025-10-12 00:13:12] 2025-10-12 04:12:37,895 | INFO     | . payload setup = 4 s
[2025-10-12 00:13:12] 2025-10-12 04:12:37,895 | INFO     | . stage-in = 0 s
[2025-10-12 00:13:12] 2025-10-12 04:12:37,895 | INFO     | . payload execution = 2109 s
[2025-10-12 00:13:12] 2025-10-12 04:12:37,895 | INFO     | . stage-out = 1 s
[2025-10-12 00:13:12] 2025-10-12 04:12:37,895 | INFO     | . log creation = 0 s
[2025-10-12 00:13:12] 2025-10-12 04:12:37,895 | INFO     | ..............................
[2025-10-12 00:13:12] 2025-10-12 04:12:37,975 | INFO     | 
[2025-10-12 00:13:12] 2025-10-12 04:12:37,975 | INFO     | job summary report
[2025-10-12 00:13:12] 2025-10-12 04:12:37,975 | INFO     | --------------------------------------------------
[2025-10-12 00:13:12] 2025-10-12 04:12:37,975 | INFO     | PanDA job id: 6838775225
[2025-10-12 00:13:12] 2025-10-12 04:12:37,975 | INFO     | task id: 46676269
[2025-10-12 00:13:12] 2025-10-12 04:12:37,976 | INFO     | errors: (none)
[2025-10-12 00:13:12] 2025-10-12 04:12:37,976 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 00:13:12] 2025-10-12 04:12:37,976 | INFO     | pilot state: finished 
[2025-10-12 00:13:12] 2025-10-12 04:12:37,976 | INFO     | transexitcode: 0
[2025-10-12 00:13:12] 2025-10-12 04:12:37,976 | INFO     | exeerrorcode: 0
[2025-10-12 00:13:12] 2025-10-12 04:12:37,976 | INFO     | exeerrordiag: 
[2025-10-12 00:13:12] 2025-10-12 04:12:37,976 | INFO     | exitcode: 0
[2025-10-12 00:13:12] 2025-10-12 04:12:37,976 | INFO     | exitmsg: OK
[2025-10-12 00:13:12] 2025-10-12 04:12:37,976 | INFO     | cpuconsumptiontime: 20800 s
[2025-10-12 00:13:12] 2025-10-12 04:12:37,976 | INFO     | nevents: 400
[2025-10-12 00:13:12] 2025-10-12 04:12:37,976 | INFO     | neventsw: 0
[2025-10-12 00:13:12] 2025-10-12 04:12:37,976 | INFO     | pid: 4079402
[2025-10-12 00:13:12] 2025-10-12 04:12:37,976 | INFO     | pgrp: 4079402
[2025-10-12 00:13:12] 2025-10-12 04:12:37,976 | INFO     | corecount: 12
[2025-10-12 00:13:12] 2025-10-12 04:12:37,976 | INFO     | event service: False
[2025-10-12 00:13:12] 2025-10-12 04:12:37,976 | INFO     | sizes: {0: 2348857, 4: 2349119, 11: 2349147, 2117: 2374271, 2118: 2374270, 2120: 2383324, 2122: 2383508, 2142: 2383734}
[2025-10-12 00:13:12] 2025-10-12 04:12:37,976 | INFO     | --------------------------------------------------
[2025-10-12 00:13:12] 2025-10-12 04:12:37,976 | INFO     | 
[2025-10-12 00:13:12] 2025-10-12 04:12:37,976 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-12 00:13:12] 2025-10-12 04:12:38,006 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 00:13:12] 2025-10-12 04:12:38,007 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 00:13:12] 2025-10-12 04:12:38,007 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 00:13:12] 2025-10-12 04:12:38,007 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 00:13:12] 2025-10-12 04:12:38,007 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 00:13:12] 2025-10-12 04:12:38,007 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 00:13:12] 2025-10-12 04:12:38,007 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 00:13:12] 2025-10-12 04:12:38,007 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 00:13:12] 2025-10-12 04:12:38,007 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 00:13:12] 2025-10-12 04:12:38,007 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 00:13:12] 2025-10-12 04:12:38,007 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 00:13:12] 2025-10-12 04:12:38,007 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 00:13:12] 2025-10-12 04:12:38,007 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 00:13:12] 2025-10-12 04:12:38,007 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 00:13:12] 2025-10-12 04:12:38,007 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 00:13:12] 2025-10-12 04:12:38,007 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 00:13:12] 2025-10-12 04:12:38,007 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 00:13:12] 2025-10-12 04:12:38,007 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 00:13:12] 2025-10-12 04:12:38,007 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 00:13:12] 2025-10-12 04:12:38,007 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 00:13:12] 2025-10-12 04:12:38,008 | INFO     | job 6838775225 has completed (purged errors)
[2025-10-12 00:13:12] 2025-10-12 04:12:38,008 | INFO     | overall cleanup function is called
[2025-10-12 00:13:12] 2025-10-12 04:12:39,019 | INFO     | --- collectZombieJob: --- 10, [4079402]
[2025-10-12 00:13:12] 2025-10-12 04:12:39,019 | INFO     | zombie collector waiting for pid 4079402
[2025-10-12 00:13:12] 2025-10-12 04:12:39,020 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 00:13:12] 2025-10-12 04:12:39,020 | INFO     | collected zombie processes
[2025-10-12 00:13:12] 2025-10-12 04:12:39,020 | INFO     | will attempt to kill all subprocesses of pid=4079402
[2025-10-12 00:13:12] 2025-10-12 04:12:39,688 | INFO     | process IDs to be killed: [4079402] (in reverse order)
[2025-10-12 00:13:12] 2025-10-12 04:12:39,819 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 00:13:12] 2025-10-12 04:12:39,820 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 00:13:12] 2025-10-12 04:12:39,838 | INFO     | did not find any defunct processes belonging to 4079402
[2025-10-12 00:13:12] 2025-10-12 04:12:39,853 | INFO     | did not find any defunct processes belonging to 4079402
[2025-10-12 00:13:12] 2025-10-12 04:12:39,854 | INFO     | ready for new job
[2025-10-12 00:13:12] 2025-10-12 04:12:39,854 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 00:13:12] 2025-10-12 04:12:39,855 | INFO     | ***************************************
[2025-10-12 00:13:12] 2025-10-12 04:12:39,855 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 00:13:12] 2025-10-12 04:12:39,855 | INFO     | ***************************************
[2025-10-12 00:13:12] 2025-10-12 04:12:39,855 | INFO     | 
[2025-10-12 00:13:12] 2025-10-12 04:12:39,860 | INFO     | architecture information:
[2025-10-12 00:13:12] 2025-10-12 04:12:39,860 | INFO     | executing command: cat /etc/os-release
[2025-10-12 00:13:12] 2025-10-12 04:12:39,912 | INFO     | cat /etc/os-release:
[2025-10-12 00:13:12] NAME="CentOS Linux"
[2025-10-12 00:13:12] VERSION="7 (Core)"
[2025-10-12 00:13:12] ID="centos"
[2025-10-12 00:13:12] ID_LIKE="rhel fedora"
[2025-10-12 00:13:12] VERSION_ID="7"
[2025-10-12 00:13:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 00:13:12] ANSI_COLOR="0;31"
[2025-10-12 00:13:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 00:13:12] HOME_URL="https://www.centos.org/"
[2025-10-12 00:13:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 00:13:12] 
[2025-10-12 00:13:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 00:13:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 00:13:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 00:13:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 00:13:12] 
[2025-10-12 00:13:12] 2025-10-12 04:12:39,913 | INFO     | ***************************************
[2025-10-12 00:13:12] 2025-10-12 04:12:40,416 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-12 00:13:12] 2025-10-12 04:12:40,471 | INFO     | sufficient remaining disk space (165209440256 B)
[2025-10-12 00:13:12] 2025-10-12 04:12:40,471 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 00:13:12] 2025-10-12 04:12:40,471 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 00:13:12] 2025-10-12 04:12:40,471 | INFO     | update_server=False
[2025-10-12 00:13:12] 2025-10-12 04:12:40,471 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 00:13:12] 2025-10-12 04:12:40,720 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 00:13:12] 2025-10-12 04:12:40,721 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 00:13:12] 2025-10-12 04:12:40,721 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 00:13:12] 2025-10-12 04:12:40,721 | INFO     | will abort loop
[2025-10-12 00:13:12] 2025-10-12 04:12:40,978 | INFO     | all data control threads have been joined
[2025-10-12 00:13:12] 2025-10-12 04:12:40,979 | INFO     | all job control threads have been joined
[2025-10-12 00:13:12] 2025-10-12 04:12:41,272 | INFO     | all payload control threads have been joined
[2025-10-12 00:13:12] 2025-10-12 04:12:41,477 | INFO     | [job] retrieve thread has finished
[2025-10-12 00:13:12] 2025-10-12 04:12:41,492 | INFO     | [data] copytool_in thread has finished
[2025-10-12 00:13:12] 2025-10-12 04:12:41,531 | INFO     | [payload] failed_post thread has finished
[2025-10-12 00:13:12] 2025-10-12 04:12:41,723 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 00:13:12] 2025-10-12 04:12:41,727 | INFO     | [job] job monitor thread has finished
[2025-10-12 00:13:12] 2025-10-12 04:12:41,728 | INFO     | [job] validate thread has finished
[2025-10-12 00:13:12] 2025-10-12 04:12:41,828 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 00:13:12] 2025-10-12 04:12:41,985 | INFO     | [data] control thread has finished
[2025-10-12 00:13:12] 2025-10-12 04:12:41,986 | INFO     | [job] control thread has finished
[2025-10-12 00:13:12] 2025-10-12 04:12:42,022 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 00:13:12] 2025-10-12 04:12:42,054 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 00:13:12] 2025-10-12 04:12:42,099 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 00:13:12] 2025-10-12 04:12:42,162 | INFO     | [payload] validate_post thread has finished
[2025-10-12 00:13:12] 2025-10-12 04:12:42,278 | INFO     | [payload] control thread has finished
[2025-10-12 00:13:12] 2025-10-12 04:12:42,784 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 00:13:12] 2025-10-12 04:12:42,988 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 00:13:12] 2025-10-12 04:12:43,661 | INFO     | [monitor] cgroup control has ended
[2025-10-12 00:13:12] 2025-10-12 04:12:43,730 | INFO     | [data] copytool_out thread has finished
[2025-10-12 00:13:12] 2025-10-12 04:12:43,994 | INFO     | [job] queue monitor thread has finished
[2025-10-12 00:13:12] 2025-10-12 04:12:46,113 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 00:13:12] 2025-10-12 04:12:46,224 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139655210571584)>', '<ExcThread(monitor, started 139654846195456)>']
[2025-10-12 00:13:12] 2025-10-12 04:12:51,253 | INFO     | all workflow threads have been joined
[2025-10-12 00:13:12] 2025-10-12 04:12:51,253 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 00:13:12] 2025-10-12 04:12:51,254 | INFO     | traces error code: 0
[2025-10-12 00:13:12] 2025-10-12 04:12:51,254 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 00:13:12] 2025-10-12 04:13:11,003 | INFO     | PID=4072946 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 00:13:12] 2025-10-12 04:13:11,004 | INFO     | .. there are 18 such processes running
[2025-10-12 00:13:12] 2025-10-12 04:13:11,004 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 00:13:12] 2025-10-12 04:13:11,004 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 00:13:12] 2025-10-12 04:13:11,004 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 00:13:12] 2025-10-12 04:13:11,004 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 00:13:12] 2025-10-12 04:13:11,013 | CRITICAL | thread 'MainThread' is not alive
[2025-10-12 00:13:12] 2025-10-12 04:13:11,013 | INFO     | [monitor] control thread has ended
[2025-10-12 00:13:12] 2025-10-12 04:13:11,332 [wrapper] ==== pilot stdout END ====
[2025-10-12 00:13:12] 2025-10-12 04:13:11,356 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 00:13:12] 2025-10-12 04:13:11,373 [wrapper] pilotpid: 4072946
[2025-10-12 00:13:12] 2025-10-12 04:13:11,393 [wrapper] Pilot exit status: 0
[2025-10-12 00:13:12] 2025-10-12 04:13:11,467 [wrapper] pandaids: 6838775225
[2025-10-12 00:13:12] 2025-10-12 04:13:11,724 [wrapper] cleanup supervisor_pilot  174720 4072947
[2025-10-12 00:13:12] 2025-10-12 04:13:11,735 [wrapper] Test setup, not cleaning
[2025-10-12 00:13:12] 2025-10-12 04:13:11,749 [wrapper] apfmon messages muted
[2025-10-12 00:13:12] 2025-10-12 04:13:11,763 [wrapper] ==== wrapper stdout END ====
[2025-10-12 00:13:12] 2025-10-12 04:13:11,785 [wrapper] ==== wrapper stderr END ====
[2025-10-12 00:13:12]  *** Error codes and diagnostics ***
[2025-10-12 00:13:12]     "exeErrorCode": 0,
[2025-10-12 00:13:12]     "exeErrorDiag": "",
[2025-10-12 00:13:12]     "pilotErrorCode": 0,
[2025-10-12 00:13:12]     "pilotErrorDiag": "",
[2025-10-12 00:13:12]  *** Listing of results directory ***
[2025-10-12 00:13:12] total 408980
[2025-10-12 00:13:12] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 14:41 pilot3.tar.gz
[2025-10-12 00:13:12] -rwx------. 1 boincer umatlas     36292 Oct 11 14:43 runpilot2-wrapper.sh
[2025-10-12 00:13:12] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 14:43 queuedata.json
[2025-10-12 00:13:12] -rw-r--r--. 1 boincer umatlas       100 Oct 11 23:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 00:13:12] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 23:36 run_atlas
[2025-10-12 00:13:12] -rw-r--r--. 1 boincer umatlas       105 Oct 11 23:36 job.xml
[2025-10-12 00:13:12] -rw-r--r--. 2 boincer umatlas 219805060 Oct 11 23:36 EVNT.46676267._002529.pool.root.1
[2025-10-12 00:13:12] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 23:36 start_atlas.sh
[2025-10-12 00:13:12] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 23:36 shared
[2025-10-12 00:13:12] -rw-r--r--. 2 boincer umatlas    569679 Oct 11 23:36 input.tar.gz
[2025-10-12 00:13:12] -rw-r--r--. 1 boincer umatlas         0 Oct 11 23:36 boinc_lockfile
[2025-10-12 00:13:12] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 23:36 pandaJob.out
[2025-10-12 00:13:12] -rw-------. 1 boincer umatlas    975512 Oct 11 23:36 agis_schedconf.cvmfs.json
[2025-10-12 00:13:12] -rw-------. 1 boincer umatlas   1560580 Oct 11 23:36 agis_ddmendpoints.agis.ALL.json
[2025-10-12 00:13:12] drwx------. 5 boincer umatlas      4096 Oct 11 23:36 pilot3
[2025-10-12 00:13:12] -rw-r--r--. 1 boincer umatlas      7164 Oct 12 00:04 init_data.xml
[2025-10-12 00:13:12] -rw-------. 1 boincer umatlas 193694640 Oct 12 00:11 HITS.46676269._062913.pool.root.1
[2025-10-12 00:13:12] -rw-r--r--. 1 boincer umatlas       529 Oct 12 00:11 boinc_task_state.xml
[2025-10-12 00:13:12] -rw-------. 1 boincer umatlas      1028 Oct 12 00:12 memory_monitor_summary.json
[2025-10-12 00:13:12] -rw-------. 1 boincer umatlas    349044 Oct 12 00:12 log.46676269._062913.job.log.tgz.1
[2025-10-12 00:13:12] -rw-------. 1 boincer umatlas        95 Oct 12 00:12 pilot_heartbeat.json
[2025-10-12 00:13:12] -rw-------. 1 boincer umatlas      7764 Oct 12 00:12 heartbeat.json
[2025-10-12 00:13:12] -rw-r--r--. 1 boincer umatlas        27 Oct 12 00:13 wrapper_checkpoint.txt
[2025-10-12 00:13:12] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 00:13 boinc_mmap_file
[2025-10-12 00:13:12] -rw-------. 1 boincer umatlas       893 Oct 12 00:13 pilotlog.txt
[2025-10-12 00:13:12] -rw-------. 1 boincer umatlas    347532 Oct 12 00:13 log.46676269._062913.job.log.1
[2025-10-12 00:13:12] -rw-------. 1 boincer umatlas       357 Oct 12 00:13 output.list
[2025-10-12 00:13:12] -rw-r--r--. 1 boincer umatlas       620 Oct 12 00:13 runtime_log
[2025-10-12 00:13:12] -rw-------. 1 boincer umatlas    716800 Oct 12 00:13 result.tar.gz
[2025-10-12 00:13:12] -rw-r--r--. 1 boincer umatlas      8695 Oct 12 00:13 runtime_log.err
[2025-10-12 00:13:12] -rw-------. 1 boincer umatlas       649 Oct 12 00:13 9BLNDm7jtR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmaOSMDmYx4Dfn.diag
[2025-10-12 00:13:12] -rw-r--r--. 1 boincer umatlas     22260 Oct 12 00:13 stderr.txt
[2025-10-12 00:13:12] HITS file was successfully produced:
[2025-10-12 00:13:12] -rw-------. 1 boincer umatlas 193694640 Oct 12 00:11 shared/HITS.pool.root.1
[2025-10-12 00:13:12]  *** Contents of shared directory: ***
[2025-10-12 00:13:12] total 405096
[2025-10-12 00:13:12] -rw-r--r--. 2 boincer umatlas 219805060 Oct 11 23:36 ATLAS.root_0
[2025-10-12 00:13:12] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 23:36 start_atlas.sh
[2025-10-12 00:13:12] -rw-r--r--. 2 boincer umatlas    569679 Oct 11 23:36 input.tar.gz
[2025-10-12 00:13:12] -rw-------. 1 boincer umatlas 193694640 Oct 12 00:11 HITS.pool.root.1
[2025-10-12 00:13:12] -rw-------. 1 boincer umatlas    716800 Oct 12 00:13 result.tar.gz
00:13:14 (4069230): run_atlas exited; CPU time 20834.443268
00:13:14 (4069230): called boinc_finish(0)

</stderr_txt>
]]>

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