Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:17:17 (3810232): wrapper (7.7.26015): starting
15:17:17 (3810232): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 15:17:17] Arguments: --nthreads 3
[2025-10-12 15:17:17] Threads: 3
[2025-10-12 15:17:17] Checking for CVMFS
[2025-10-12 15:17:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 15:17:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 15:17:17] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 15:17:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 15:17:17] 2.9.2.0 2545361 4424 80164 151621 3 56 21727735 36864001 0 130560 0 3236108 99.990 148235 936 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 15:17:17] CVMFS is ok
[2025-10-12 15:17:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 15:17:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 15:17:17] Further information can be found at the LHC@home message board.
[2025-10-12 15:17:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 15:17:17] Checking for apptainer binary...
[2025-10-12 15:17:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 15:17:17] Running /usr/bin/apptainer --version
[2025-10-12 15:17:17] apptainer version 1.4.1-1.1
[2025-10-12 15:17:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 15:17:17] atlasA212
[2025-10-12 15:17:17] apptainer works
[2025-10-12 15:17:17] Set ATHENA_PROC_NUMBER=3
[2025-10-12 15:17:17] Set ATHENA_CORE_NUMBER=3
[2025-10-12 15:17:17] Starting ATLAS job with PandaID=6838989799
[2025-10-12 15:17:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 16:53:39]  *** The last 200 lines of the pilot log: ***
[2025-10-12 16:53:39]  status=None
[2025-10-12 16:53:39]  status_code=0
[2025-10-12 16:53:39]  storage_token=
[2025-10-12 16:53:39]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6838989799/log.46676269._065707.job.log.tgz.1
[2025-10-12 16:53:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/43/51/log.46676269._065707.job.log.tgz.1
[2025-10-12 16:53:39]  workdir=None
[2025-10-12 16:53:39] ]
[2025-10-12 16:53:39] 2025-10-12 14:52:33,530 | INFO     | transferring file log.46676269._065707.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6838989799/log.46676269._065707.job.log.tgz.1 to /local/data/boinc/
[2025-10-12 16:53:39] 2025-10-12 14:52:33,530 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6838989799/log.46676269._065707.job.log.tgz.1 /local/data/boinc/slots/0/log.46676269._0657
[2025-10-12 16:53:39] 2025-10-12 14:52:33,547 | INFO     | adding to output.list: log.46676269._065707.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/43/51/log.46676269._065707.job.log.tg
[2025-10-12 16:53:39] 2025-10-12 14:52:33,547 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 16:53:39] 2025-10-12 14:52:33,547 | INFO     | summary of transferred files:
[2025-10-12 16:53:39] 2025-10-12 14:52:33,547 | INFO     |  -- lfn=log.46676269._065707.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 16:53:39] 2025-10-12 14:52:33,547 | INFO     | stage-out finished correctly
[2025-10-12 16:53:39] 2025-10-12 14:52:34,398 | INFO     | PID=3813952 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 16:53:39] 2025-10-12 14:52:35,375 | INFO     | monitor loop #437: job 0:6838989799 is in state 'finished'
[2025-10-12 16:53:39] 2025-10-12 14:52:35,375 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:53:39] 2025-10-12 14:52:35,399 | INFO     | time since job start (5711s) is within the limit (172800.0s)
[2025-10-12 16:53:39] 2025-10-12 14:52:35,816 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 16:53:39] 2025-10-12 14:52:37,404 | INFO     | time since job start (5713s) is within the limit (172800.0s)
[2025-10-12 16:53:39] 2025-10-12 14:52:37,854 | INFO     | job 6838989799 has state=finished
[2025-10-12 16:53:39] 2025-10-12 14:52:37,854 | INFO     | preparing for final server update for job 6838989799 in state='finished'
[2025-10-12 16:53:39] 2025-10-12 14:52:37,854 | INFO     | this job has now completed (state=finished)
[2025-10-12 16:53:39] 2025-10-12 14:52:37,854 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 16:53:39] 2025-10-12 14:52:37,855 | INFO     | log transfer has been attempted: DONE
[2025-10-12 16:53:39] 2025-10-12 14:52:37,855 | INFO     | job 6838989799 has finished - writing final server update
[2025-10-12 16:53:39] 2025-10-12 14:52:37,855 | INFO     | total number of processed events: 400 (read)
[2025-10-12 16:53:39] 2025-10-12 14:52:37,855 | INFO     | executing command: lscpu
[2025-10-12 16:53:39] 2025-10-12 14:52:37,870 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 16:53:39] 2025-10-12 14:52:37,878 | INFO     | monitor loop #438: job 0:6838989799 is in state 'finished'
[2025-10-12 16:53:39] 2025-10-12 14:52:37,878 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:53:39] 2025-10-12 14:52:39,409 | INFO     | time since job start (5715s) is within the limit (172800.0s)
[2025-10-12 16:53:39] 2025-10-12 14:52:40,381 | INFO     | monitor loop #439: job 0:6838989799 is in state 'finished'
[2025-10-12 16:53:39] 2025-10-12 14:52:40,381 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:53:39] 2025-10-12 14:52:40,651 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 16:53:39] 2025-10-12 14:52:40,652 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 4333.4675
[2025-10-12 16:53:39] 2025-10-12 14:52:40,653 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6838989799/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 16:53:39] 2025-10-12 14:52:40,653 | INFO     | extracted standard info from prmon json
[2025-10-12 16:53:39] 2025-10-12 14:52:40,653 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 16:53:39] 2025-10-12 14:52:40,653 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 16:53:39] 2025-10-12 14:52:40,654 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 16:53:39] 2025-10-12 14:52:40,654 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 16:53:39] 2025-10-12 14:52:40,654 | INFO     | fitting pss+swap vs Time
[2025-10-12 16:53:39] 2025-10-12 14:52:40,655 | INFO     | sum of square deviations: 204163828.0
[2025-10-12 16:53:39] 2025-10-12 14:52:40,655 | INFO     | sum of deviations: -15474043423.0
[2025-10-12 16:53:39] 2025-10-12 14:52:40,655 | INFO     | mean x: 1760277994.0
[2025-10-12 16:53:39] 2025-10-12 14:52:40,655 | INFO     | mean y: 2475214.7011494255
[2025-10-12 16:53:39] 2025-10-12 14:52:40,655 | INFO     | -- intersect: 133417969930.57872
[2025-10-12 16:53:39] 2025-10-12 14:52:40,655 | INFO     | intersect: 133417969930.57872
[2025-10-12 16:53:39] 2025-10-12 14:52:40,655 | INFO     | chi2: 0.08066641867256694
[2025-10-12 16:53:39] 2025-10-12 14:52:40,655 | INFO     | -- intersect: 133417969930.57872
[2025-10-12 16:53:39] 2025-10-12 14:52:40,655 | INFO     | current memory leak: -75.79 B/s (using 87 data points, chi2=0.08)
[2025-10-12 16:53:39] 2025-10-12 14:52:40,655 | INFO     | could have reported an average CPU frequency of 4402 MHz (7 samples)
[2025-10-12 16:53:39] 2025-10-12 14:52:40,655 | INFO     | ..............................
[2025-10-12 16:53:39] 2025-10-12 14:52:40,656 | INFO     | . Timing measurements:
[2025-10-12 16:53:39] 2025-10-12 14:52:40,656 | INFO     | . get job = 0 s
[2025-10-12 16:53:39] 2025-10-12 14:52:40,656 | INFO     | . initial setup = 1 s
[2025-10-12 16:53:39] 2025-10-12 14:52:40,656 | INFO     | . payload setup = 3 s
[2025-10-12 16:53:39] 2025-10-12 14:52:40,656 | INFO     | . stage-in = 0 s
[2025-10-12 16:53:39] 2025-10-12 14:52:40,656 | INFO     | . payload execution = 5688 s
[2025-10-12 16:53:39] 2025-10-12 14:52:40,656 | INFO     | . stage-out = 0 s
[2025-10-12 16:53:39] 2025-10-12 14:52:40,656 | INFO     | . log creation = 0 s
[2025-10-12 16:53:39] 2025-10-12 14:52:40,656 | INFO     | ..............................
[2025-10-12 16:53:39] 2025-10-12 14:52:41,171 | INFO     | 
[2025-10-12 16:53:39] 2025-10-12 14:52:41,171 | INFO     | job summary report
[2025-10-12 16:53:39] 2025-10-12 14:52:41,171 | INFO     | --------------------------------------------------
[2025-10-12 16:53:39] 2025-10-12 14:52:41,171 | INFO     | PanDA job id: 6838989799
[2025-10-12 16:53:39] 2025-10-12 14:52:41,171 | INFO     | task id: 46676269
[2025-10-12 16:53:39] 2025-10-12 14:52:41,171 | INFO     | errors: (none)
[2025-10-12 16:53:39] 2025-10-12 14:52:41,171 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 16:53:39] 2025-10-12 14:52:41,171 | INFO     | pilot state: finished 
[2025-10-12 16:53:39] 2025-10-12 14:52:41,171 | INFO     | transexitcode: 0
[2025-10-12 16:53:39] 2025-10-12 14:52:41,171 | INFO     | exeerrorcode: 0
[2025-10-12 16:53:39] 2025-10-12 14:52:41,171 | INFO     | exeerrordiag: 
[2025-10-12 16:53:39] 2025-10-12 14:52:41,171 | INFO     | exitcode: 0
[2025-10-12 16:53:39] 2025-10-12 14:52:41,171 | INFO     | exitmsg: OK
[2025-10-12 16:53:39] 2025-10-12 14:52:41,171 | INFO     | cpuconsumptiontime: 16422 s
[2025-10-12 16:53:39] 2025-10-12 14:52:41,172 | INFO     | nevents: 400
[2025-10-12 16:53:39] 2025-10-12 14:52:41,172 | INFO     | neventsw: 0
[2025-10-12 16:53:39] 2025-10-12 14:52:41,172 | INFO     | pid: 3820514
[2025-10-12 16:53:39] 2025-10-12 14:52:41,172 | INFO     | pgrp: 3820514
[2025-10-12 16:53:39] 2025-10-12 14:52:41,172 | INFO     | corecount: 3
[2025-10-12 16:53:39] 2025-10-12 14:52:41,172 | INFO     | event service: False
[2025-10-12 16:53:39] 2025-10-12 14:52:41,172 | INFO     | sizes: {0: 2348633, 1: 2348888, 4: 2349150, 11: 2349178, 5695: 2376013, 5696: 2385017, 5698: 2385201, 5703: 2385395}
[2025-10-12 16:53:39] 2025-10-12 14:52:41,172 | INFO     | --------------------------------------------------
[2025-10-12 16:53:39] 2025-10-12 14:52:41,172 | INFO     | 
[2025-10-12 16:53:39] 2025-10-12 14:52:41,172 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-12 16:53:39] 2025-10-12 14:52:41,187 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 16:53:39] 2025-10-12 14:52:41,187 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 16:53:39] 2025-10-12 14:52:41,187 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 16:53:39] 2025-10-12 14:52:41,187 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 16:53:39] 2025-10-12 14:52:41,187 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 16:53:39] 2025-10-12 14:52:41,187 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 16:53:39] 2025-10-12 14:52:41,187 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 16:53:39] 2025-10-12 14:52:41,187 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 16:53:39] 2025-10-12 14:52:41,187 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 16:53:39] 2025-10-12 14:52:41,187 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 16:53:39] 2025-10-12 14:52:41,188 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 16:53:39] 2025-10-12 14:52:41,188 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 16:53:39] 2025-10-12 14:52:41,188 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 16:53:39] 2025-10-12 14:52:41,188 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 16:53:39] 2025-10-12 14:52:41,188 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 16:53:39] 2025-10-12 14:52:41,188 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 16:53:39] 2025-10-12 14:52:41,188 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 16:53:39] 2025-10-12 14:52:41,188 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 16:53:39] 2025-10-12 14:52:41,188 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 16:53:39] 2025-10-12 14:52:41,188 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 16:53:39] 2025-10-12 14:52:41,188 | INFO     | job 6838989799 has completed (purged errors)
[2025-10-12 16:53:39] 2025-10-12 14:52:41,188 | INFO     | overall cleanup function is called
[2025-10-12 16:53:39] 2025-10-12 14:52:42,194 | INFO     | --- collectZombieJob: --- 10, [3820514]
[2025-10-12 16:53:39] 2025-10-12 14:52:42,194 | INFO     | zombie collector waiting for pid 3820514
[2025-10-12 16:53:39] 2025-10-12 14:52:42,194 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 16:53:39] 2025-10-12 14:52:42,194 | INFO     | collected zombie processes
[2025-10-12 16:53:39] 2025-10-12 14:52:42,194 | INFO     | will attempt to kill all subprocesses of pid=3820514
[2025-10-12 16:53:39] 2025-10-12 14:52:42,256 | INFO     | process IDs to be killed: [3820514] (in reverse order)
[2025-10-12 16:53:39] 2025-10-12 14:52:42,287 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 16:53:39] 2025-10-12 14:52:42,288 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 16:53:39] 2025-10-12 14:52:42,290 | INFO     | did not find any defunct processes belonging to 3820514
[2025-10-12 16:53:39] 2025-10-12 14:52:42,292 | INFO     | did not find any defunct processes belonging to 3820514
[2025-10-12 16:53:39] 2025-10-12 14:52:42,292 | INFO     | ready for new job
[2025-10-12 16:53:39] 2025-10-12 14:52:42,292 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 16:53:39] 2025-10-12 14:52:42,293 | INFO     | ***************************************
[2025-10-12 16:53:39] 2025-10-12 14:52:42,293 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 16:53:39] 2025-10-12 14:52:42,293 | INFO     | ***************************************
[2025-10-12 16:53:39] 2025-10-12 14:52:42,293 | INFO     | 
[2025-10-12 16:53:39] 2025-10-12 14:52:42,293 | INFO     | architecture information:
[2025-10-12 16:53:39] 2025-10-12 14:52:42,293 | INFO     | executing command: cat /etc/os-release
[2025-10-12 16:53:39] 2025-10-12 14:52:42,305 | INFO     | cat /etc/os-release:
[2025-10-12 16:53:39] NAME="CentOS Linux"
[2025-10-12 16:53:39] VERSION="7 (Core)"
[2025-10-12 16:53:39] ID="centos"
[2025-10-12 16:53:39] ID_LIKE="rhel fedora"
[2025-10-12 16:53:39] VERSION_ID="7"
[2025-10-12 16:53:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 16:53:39] ANSI_COLOR="0;31"
[2025-10-12 16:53:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 16:53:39] HOME_URL="https://www.centos.org/"
[2025-10-12 16:53:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 16:53:39] 
[2025-10-12 16:53:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 16:53:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 16:53:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 16:53:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 16:53:39] 
[2025-10-12 16:53:39] 2025-10-12 14:52:42,305 | INFO     | ***************************************
[2025-10-12 16:53:39] 2025-10-12 14:52:42,808 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 16:53:39] 2025-10-12 14:52:42,820 | INFO     | sufficient remaining disk space (383365677056 B)
[2025-10-12 16:53:39] 2025-10-12 14:52:42,820 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 16:53:39] 2025-10-12 14:52:42,820 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 16:53:39] 2025-10-12 14:52:42,820 | INFO     | update_server=False
[2025-10-12 16:53:39] 2025-10-12 14:52:42,820 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 16:53:39] 2025-10-12 14:52:42,821 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 16:53:39] 2025-10-12 14:52:42,877 | INFO     | all payload control threads have been joined
[2025-10-12 16:53:39] 2025-10-12 14:52:42,884 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 16:53:39] 2025-10-12 14:52:42,884 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 16:53:39] 2025-10-12 14:52:42,884 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:53:39] 2025-10-12 14:52:42,884 | INFO     | will abort loop
[2025-10-12 16:53:39] 2025-10-12 14:52:43,660 | INFO     | all data control threads have been joined
[2025-10-12 16:53:39] 2025-10-12 14:52:43,825 | INFO     | [job] retrieve thread has finished
[2025-10-12 16:53:39] 2025-10-12 14:52:43,853 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 16:53:39] 2025-10-12 14:52:43,882 | INFO     | [payload] control thread has finished
[2025-10-12 16:53:39] 2025-10-12 14:52:43,889 | INFO     | [job] job monitor thread has finished
[2025-10-12 16:53:39] 2025-10-12 14:52:44,081 | INFO     | all job control threads have been joined
[2025-10-12 16:53:39] 2025-10-12 14:52:44,089 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 16:53:39] 2025-10-12 14:52:44,363 | INFO     | [payload] failed_post thread has finished
[2025-10-12 16:53:39] 2025-10-12 14:52:44,665 | INFO     | [data] control thread has finished
[2025-10-12 16:53:39] 2025-10-12 14:52:44,692 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 16:53:39] 2025-10-12 14:52:45,086 | INFO     | [job] control thread has finished
[2025-10-12 16:53:39] 2025-10-12 14:52:45,200 | INFO     | [job] validate thread has finished
[2025-10-12 16:53:39] 2025-10-12 14:52:45,282 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 16:53:39] 2025-10-12 14:52:45,283 | INFO     | [data] copytool_in thread has finished
[2025-10-12 16:53:39] 2025-10-12 14:52:45,423 | INFO     | [payload] validate_post thread has finished
[2025-10-12 16:53:39] 2025-10-12 14:52:45,698 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:53:39] 2025-10-12 14:52:46,094 | INFO     | [data] copytool_out thread has finished
[2025-10-12 16:53:39] 2025-10-12 14:52:46,703 | INFO     | [job] queue monitor thread has finished
[2025-10-12 16:53:39] 2025-10-12 14:52:46,826 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 16:53:39] 2025-10-12 14:52:53,254 | INFO     | job.realtimelogging is not enabled
[2025-10-12 16:53:39] 2025-10-12 14:52:54,259 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 16:53:39] 2025-10-12 14:53:12,546 | INFO     | PID=3813952 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 16:53:39] 2025-10-12 14:53:12,547 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 16:53:39] 2025-10-12 14:53:12,547 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 16:53:39] 2025-10-12 14:53:12,547 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 16:53:39] 2025-10-12 14:53:33,074 | INFO     | [monitor] cgroup control has ended
[2025-10-12 16:53:39] 2025-10-12 14:53:34,128 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140583091541824)>', '<ExcThread(monitor, started 140582441699072)>']
[2025-10-12 16:53:39] 2025-10-12 14:53:34,657 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 16:53:39] 2025-10-12 14:53:34,657 | INFO     | [monitor] control thread has ended
[2025-10-12 16:53:39] 2025-10-12 14:53:39,153 | INFO     | all workflow threads have been joined
[2025-10-12 16:53:39] 2025-10-12 14:53:39,153 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 16:53:39] 2025-10-12 14:53:39,153 | INFO     | traces error code: 0
[2025-10-12 16:53:39] 2025-10-12 14:53:39,153 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 16:53:39] 2025-10-12 14:53:39,219 [wrapper] ==== pilot stdout END ====
[2025-10-12 16:53:39] 2025-10-12 14:53:39,222 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 16:53:39] 2025-10-12 14:53:39,225 [wrapper] pilotpid: 3813952
[2025-10-12 16:53:39] 2025-10-12 14:53:39,228 [wrapper] Pilot exit status: 0
[2025-10-12 16:53:39] 2025-10-12 14:53:39,237 [wrapper] pandaids: 6838989799
[2025-10-12 16:53:39] 2025-10-12 14:53:39,261 [wrapper] cleanup supervisor_pilot 3833501 3813953
[2025-10-12 16:53:39] 2025-10-12 14:53:39,264 [wrapper] Test setup, not cleaning
[2025-10-12 16:53:39] 2025-10-12 14:53:39,267 [wrapper] apfmon messages muted
[2025-10-12 16:53:39] 2025-10-12 14:53:39,270 [wrapper] ==== wrapper stdout END ====
[2025-10-12 16:53:39] 2025-10-12 14:53:39,273 [wrapper] ==== wrapper stderr END ====
[2025-10-12 16:53:39]  *** Error codes and diagnostics ***
[2025-10-12 16:53:39]     "exeErrorCode": 0,
[2025-10-12 16:53:39]     "exeErrorDiag": "",
[2025-10-12 16:53:39]     "pilotErrorCode": 0,
[2025-10-12 16:53:39]     "pilotErrorDiag": "",
[2025-10-12 16:53:39]  *** Listing of results directory ***
[2025-10-12 16:53:39] total 410904
[2025-10-12 16:53:39] -rw-r--r-- 1 boinc boinc    557409 Oct 11 23:39 pilot3.tar.gz
[2025-10-12 16:53:39] -rw-r--r-- 1 boinc boinc      5112 Oct 12 00:00 queuedata.json
[2025-10-12 16:53:39] -rwx------ 1 boinc boinc     36292 Oct 12 00:00 runpilot2-wrapper.sh
[2025-10-12 16:53:39] -rw-r--r-- 1 boinc boinc       100 Oct 12 15:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 16:53:39] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 15:17 run_atlas
[2025-10-12 16:53:39] -rw-r--r-- 1 boinc boinc       105 Oct 12 15:17 job.xml
[2025-10-12 16:53:39] -rw-r--r-- 2 boinc boinc 221079003 Oct 12 15:17 EVNT.46676267._002639.pool.root.1
[2025-10-12 16:53:39] -rw-r--r-- 2 boinc boinc    569683 Oct 12 15:17 input.tar.gz
[2025-10-12 16:53:39] -rw-r--r-- 2 boinc boinc     15120 Oct 12 15:17 start_atlas.sh
[2025-10-12 16:53:39] drwxrwx--x 2 boinc boinc      4096 Oct 12 15:17 shared
[2025-10-12 16:53:39] -rw-r--r-- 1 boinc boinc         0 Oct 12 15:17 boinc_setup_complete
[2025-10-12 16:53:39] -rw-r--r-- 1 boinc boinc      6450 Oct 12 15:17 init_data.xml
[2025-10-12 16:53:39] -rw-r--r-- 1 boinc boinc         0 Oct 12 15:17 boinc_lockfile
[2025-10-12 16:53:39] -rw-r--r-- 1 boinc boinc      2550 Oct 12 15:17 pandaJob.out
[2025-10-12 16:53:39] -rw------- 1 boinc boinc    975528 Oct 12 15:17 agis_schedconf.cvmfs.json
[2025-10-12 16:53:39] -rw------- 1 boinc boinc   1560580 Oct 12 15:17 agis_ddmendpoints.agis.ALL.json
[2025-10-12 16:53:39] drwx------ 5 boinc boinc      4096 Oct 12 15:17 pilot3
[2025-10-12 16:53:39] -rw------- 1 boinc boinc 193558576 Oct 12 16:52 HITS.46676269._065707.pool.root.1
[2025-10-12 16:53:39] -rw-r--r-- 1 boinc boinc       530 Oct 12 16:52 boinc_task_state.xml
[2025-10-12 16:53:39] -rw------- 1 boinc boinc      1018 Oct 12 16:52 memory_monitor_summary.json
[2025-10-12 16:53:39] -rw------- 1 boinc boinc    279042 Oct 12 16:52 log.46676269._065707.job.log.tgz.1
[2025-10-12 16:53:39] -rw------- 1 boinc boinc      7764 Oct 12 16:52 heartbeat.json
[2025-10-12 16:53:39] -rw-r--r-- 1 boinc boinc        27 Oct 12 16:53 wrapper_checkpoint.txt
[2025-10-12 16:53:39] -rw-r--r-- 1 boinc boinc      8192 Oct 12 16:53 boinc_mmap_file
[2025-10-12 16:53:39] -rw------- 1 boinc boinc        95 Oct 12 16:53 pilot_heartbeat.json
[2025-10-12 16:53:39] -rw------- 1 boinc boinc      5010 Oct 12 16:53 pilotlog.txt
[2025-10-12 16:53:39] -rw------- 1 boinc boinc    832851 Oct 12 16:53 log.46676269._065707.job.log.1
[2025-10-12 16:53:39] -rw------- 1 boinc boinc       357 Oct 12 16:53 output.list
[2025-10-12 16:53:39] -rw-r--r-- 1 boinc boinc       620 Oct 12 16:53 runtime_log
[2025-10-12 16:53:39] -rw------- 1 boinc boinc   1126400 Oct 12 16:53 result.tar.gz
[2025-10-12 16:53:39] -rw-r--r-- 1 boinc boinc      8792 Oct 12 16:53 runtime_log.err
[2025-10-12 16:53:39] -rw------- 1 boinc boinc       663 Oct 12 16:53 SgKMDm8owR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOkhNDmlH2tWm.diag
[2025-10-12 16:53:39] -rw-r--r-- 1 boinc boinc     22087 Oct 12 16:53 stderr.txt
[2025-10-12 16:53:39] HITS file was successfully produced:
[2025-10-12 16:53:39] -rw------- 1 boinc boinc 193558576 Oct 12 16:52 shared/HITS.pool.root.1
[2025-10-12 16:53:39]  *** Contents of shared directory: ***
[2025-10-12 16:53:39] total 406608
[2025-10-12 16:53:39] -rw-r--r-- 2 boinc boinc 221079003 Oct 12 15:17 ATLAS.root_0
[2025-10-12 16:53:39] -rw-r--r-- 2 boinc boinc    569683 Oct 12 15:17 input.tar.gz
[2025-10-12 16:53:39] -rw-r--r-- 2 boinc boinc     15120 Oct 12 15:17 start_atlas.sh
[2025-10-12 16:53:39] -rw------- 1 boinc boinc 193558576 Oct 12 16:52 HITS.pool.root.1
[2025-10-12 16:53:39] -rw------- 1 boinc boinc   1126400 Oct 12 16:53 result.tar.gz
16:53:40 (3810232): run_atlas exited; CPU time 16443.517085
16:53:40 (3810232): called boinc_finish(0)

</stderr_txt>
]]>

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