Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:11:32 (1243): wrapper (7.7.26015): starting
23:11:32 (1243): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 23:11:32] Arguments: --nthreads 8
[2025-10-11 23:11:32] Threads: 8
[2025-10-11 23:11:32] Checking for CVMFS
[2025-10-11 23:11:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 23:11:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 23:11:32] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 23:11:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 23:11:32] 2.11.2.0 1598 215646 125720 151604 3 188 19986218 20275201 917 130560 1 220209432 99.992 11682997 11160 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 23:11:32] CVMFS is ok
[2025-10-11 23:11:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 23:11:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 23:11:32] Further information can be found at the LHC@home message board.
[2025-10-11 23:11:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 23:11:32] Checking for apptainer binary...
[2025-10-11 23:11:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 23:11:32] Running /usr/bin/apptainer --version
[2025-10-11 23:11:32] apptainer version 1.3.2-1.el7
[2025-10-11 23:11:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 23:11:33] c-205-36.aglt2.org
[2025-10-11 23:11:33] apptainer works
[2025-10-11 23:11:33] Set ATHENA_PROC_NUMBER=8
[2025-10-11 23:11:33] Set ATHENA_CORE_NUMBER=8
[2025-10-11 23:11:33] Starting ATLAS job with PandaID=6838850647
[2025-10-11 23:11:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 00:22:16]  *** The last 200 lines of the pilot log: ***
[2025-10-12 00:22:16] 2025-10-12 04:21:34,465 | INFO     | stage-out finished correctly
[2025-10-12 00:22:16] 2025-10-12 04:21:35,603 | INFO     | PID=5091 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 00:22:16] 2025-10-12 04:21:35,603 | INFO     | .. there are 2 such processes running
[2025-10-12 00:22:16] 2025-10-12 04:21:36,081 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 00:22:16] 2025-10-12 04:21:36,604 | INFO     | time since job start (4190s) is within the limit (172800.0s)
[2025-10-12 00:22:16] 2025-10-12 04:21:38,610 | INFO     | time since job start (4192s) is within the limit (172800.0s)
[2025-10-12 00:22:16] 2025-10-12 04:21:38,644 | INFO     | job 6838850647 has state=finished
[2025-10-12 00:22:16] 2025-10-12 04:21:38,644 | INFO     | preparing for final server update for job 6838850647 in state='finished'
[2025-10-12 00:22:16] 2025-10-12 04:21:38,644 | INFO     | this job has now completed (state=finished)
[2025-10-12 00:22:16] 2025-10-12 04:21:38,645 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 00:22:16] 2025-10-12 04:21:38,645 | INFO     | log transfer has been attempted: DONE
[2025-10-12 00:22:16] 2025-10-12 04:21:38,645 | INFO     | job 6838850647 has finished - writing final server update
[2025-10-12 00:22:16] 2025-10-12 04:21:38,645 | INFO     | total number of processed events: 400 (read)
[2025-10-12 00:22:16] 2025-10-12 04:21:38,646 | INFO     | executing command: lscpu
[2025-10-12 00:22:16] 2025-10-12 04:21:38,680 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 00:22:16] 2025-10-12 04:21:39,030 | WARNING  | process 11521 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 00:22:16] 2025-10-12 04:21:39,031 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6838850647/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 00:22:16] 2025-10-12 04:21:39,031 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6838850647/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 00:22:16] 2025-10-12 04:21:39,032 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-12 00:22:16] 2025-10-12 04:21:39,032 | WARNING  | maxPSS not found in memory monitor output
[2025-10-12 00:22:16] 2025-10-12 04:21:39,032 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3497611 B
[2025-10-12 00:22:16] 2025-10-12 04:21:39,032 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15293 B
[2025-10-12 00:22:16] 2025-10-12 04:21:39,033 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 00:22:16] 2025-10-12 04:21:40,616 | INFO     | time since job start (4194s) is within the limit (172800.0s)
[2025-10-12 00:22:16] 2025-10-12 04:21:42,621 | INFO     | time since job start (4196s) is within the limit (172800.0s)
[2025-10-12 00:22:16] 2025-10-12 04:21:42,991 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 00:22:16] 2025-10-12 04:21:43,001 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2087.639875
[2025-10-12 00:22:16] 2025-10-12 04:21:43,005 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6838850647/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 00:22:16] 2025-10-12 04:21:43,005 | INFO     | extracted standard info from prmon json
[2025-10-12 00:22:16] 2025-10-12 04:21:43,006 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 00:22:16] 2025-10-12 04:21:43,006 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 00:22:16] 2025-10-12 04:21:43,006 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 00:22:16] 2025-10-12 04:21:43,006 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 00:22:16] 2025-10-12 04:21:43,007 | INFO     | fitting pss+swap vs Time
[2025-10-12 00:22:16] 2025-10-12 04:21:43,007 | INFO     | sum of square deviations: 73882315.5
[2025-10-12 00:22:16] 2025-10-12 04:21:43,008 | INFO     | sum of deviations: 304764113.0
[2025-10-12 00:22:16] 2025-10-12 04:21:43,008 | INFO     | mean x: 1760240896.5
[2025-10-12 00:22:16] 2025-10-12 04:21:43,008 | INFO     | mean y: 2511154.8387096776
[2025-10-12 00:22:16] 2025-10-12 04:21:43,008 | INFO     | sufficient remaining disk space (32757514240 B)
[2025-10-12 00:22:16] 2025-10-12 04:21:43,009 | INFO     | -- intersect: -7258472097.481628
[2025-10-12 00:22:16] 2025-10-12 04:21:43,009 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-12 00:22:16] 2025-10-12 04:21:43,009 | INFO     | intersect: -7258472097.481628
[2025-10-12 00:22:16] 2025-10-12 04:21:43,009 | INFO     | chi2: 0.0028117419284033715
[2025-10-12 00:22:16] 2025-10-12 04:21:43,010 | INFO     | -- intersect: -7258472097.481628
[2025-10-12 00:22:16] 2025-10-12 04:21:43,010 | INFO     | current memory leak: 4.12 B/s (using 62 data points, chi2=0.00)
[2025-10-12 00:22:16] 2025-10-12 04:21:43,011 | INFO     | could have reported an average CPU frequency of 2250 MHz (6 samples)
[2025-10-12 00:22:16] 2025-10-12 04:21:43,011 | INFO     | ..............................
[2025-10-12 00:22:16] 2025-10-12 04:21:43,011 | INFO     | . Timing measurements:
[2025-10-12 00:22:16] 2025-10-12 04:21:43,011 | INFO     | . get job = 0 s
[2025-10-12 00:22:16] 2025-10-12 04:21:43,011 | INFO     | . initial setup = 2 s
[2025-10-12 00:22:16] 2025-10-12 04:21:43,012 | INFO     | . payload setup = 6 s
[2025-10-12 00:22:16] 2025-10-12 04:21:43,012 | INFO     | . stage-in = 0 s
[2025-10-12 00:22:16] 2025-10-12 04:21:43,012 | INFO     | . payload execution = 4161 s
[2025-10-12 00:22:16] 2025-10-12 04:21:43,012 | INFO     | . stage-out = 0 s
[2025-10-12 00:22:16] 2025-10-12 04:21:43,012 | INFO     | . log creation = 0 s
[2025-10-12 00:22:16] 2025-10-12 04:21:43,012 | INFO     | ..............................
[2025-10-12 00:22:16] 2025-10-12 04:21:43,050 | INFO     | size of work directory /tmp/boinchome/slots/1/PanDA_Pilot-6838850647: 3793798 B (within 2537553920 B limit)
[2025-10-12 00:22:16] 2025-10-12 04:21:43,071 | INFO     | pfn file=/tmp/boinchome/slots/1/PanDA_Pilot-6838850647/HITS.46676269._063323.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-12 00:22:16] 2025-10-12 04:21:43,082 | INFO     | total size of present files: 0 B (workdir size: 3793798 B)
[2025-10-12 00:22:16] 2025-10-12 04:21:43,098 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/1/PanDA_Pilot-6838850647/HITS.46676269._063323.pool.root.1 since it does not exist
[2025-10-12 00:22:16] 2025-10-12 04:21:43,216 | INFO     | number of running child processes to parent process 11521: 1
[2025-10-12 00:22:16] 2025-10-12 04:21:43,216 | INFO     | maximum number of monitored processes: 6
[2025-10-12 00:22:16] 2025-10-12 04:21:43,216 | INFO     | aborting job monitoring since job object (job id=6838850647) has expired
[2025-10-12 00:22:16] 2025-10-12 04:21:43,368 | INFO     | 
[2025-10-12 00:22:16] 2025-10-12 04:21:43,368 | INFO     | job summary report
[2025-10-12 00:22:16] 2025-10-12 04:21:43,368 | INFO     | --------------------------------------------------
[2025-10-12 00:22:16] 2025-10-12 04:21:43,369 | INFO     | PanDA job id: 6838850647
[2025-10-12 00:22:16] 2025-10-12 04:21:43,369 | INFO     | task id: 46676269
[2025-10-12 00:22:16] 2025-10-12 04:21:43,369 | INFO     | errors: (none)
[2025-10-12 00:22:16] 2025-10-12 04:21:43,369 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 00:22:16] 2025-10-12 04:21:43,369 | INFO     | pilot state: finished 
[2025-10-12 00:22:16] 2025-10-12 04:21:43,369 | INFO     | transexitcode: 0
[2025-10-12 00:22:16] 2025-10-12 04:21:43,369 | INFO     | exeerrorcode: 0
[2025-10-12 00:22:16] 2025-10-12 04:21:43,369 | INFO     | exeerrordiag: 
[2025-10-12 00:22:16] 2025-10-12 04:21:43,369 | INFO     | exitcode: 0
[2025-10-12 00:22:16] 2025-10-12 04:21:43,370 | INFO     | exitmsg: OK
[2025-10-12 00:22:16] 2025-10-12 04:21:43,370 | INFO     | cpuconsumptiontime: 30689 s
[2025-10-12 00:22:16] 2025-10-12 04:21:43,370 | INFO     | nevents: 400
[2025-10-12 00:22:16] 2025-10-12 04:21:43,370 | INFO     | neventsw: 0
[2025-10-12 00:22:16] 2025-10-12 04:21:43,370 | INFO     | pid: 11521
[2025-10-12 00:22:16] 2025-10-12 04:21:43,370 | INFO     | pgrp: 11521
[2025-10-12 00:22:16] 2025-10-12 04:21:43,370 | INFO     | corecount: 8
[2025-10-12 00:22:16] 2025-10-12 04:21:43,370 | INFO     | event service: False
[2025-10-12 00:22:16] 2025-10-12 04:21:43,370 | INFO     | sizes: {0: 2348686, 1: 2348885, 5: 2349147, 11: 2349203, 4171: 2375210, 4172: 2375209, 4173: 2384391, 4175: 2384447, 4182: 2384669}
[2025-10-12 00:22:16] 2025-10-12 04:21:43,371 | INFO     | --------------------------------------------------
[2025-10-12 00:22:16] 2025-10-12 04:21:43,371 | INFO     | 
[2025-10-12 00:22:16] 2025-10-12 04:21:43,371 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 00:22:16] 2025-10-12 04:21:43,393 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 00:22:16] 2025-10-12 04:21:43,394 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 00:22:16] 2025-10-12 04:21:43,394 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 00:22:16] 2025-10-12 04:21:43,394 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 00:22:16] 2025-10-12 04:21:43,394 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 00:22:16] 2025-10-12 04:21:43,394 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 00:22:16] 2025-10-12 04:21:43,395 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 00:22:16] 2025-10-12 04:21:43,395 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 00:22:16] 2025-10-12 04:21:43,395 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 00:22:16] 2025-10-12 04:21:43,395 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 00:22:16] 2025-10-12 04:21:43,395 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 00:22:16] 2025-10-12 04:21:43,395 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 00:22:16] 2025-10-12 04:21:43,395 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 00:22:16] 2025-10-12 04:21:43,395 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 00:22:16] 2025-10-12 04:21:43,395 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 00:22:16] 2025-10-12 04:21:43,396 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 00:22:16] 2025-10-12 04:21:43,396 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 00:22:16] 2025-10-12 04:21:43,396 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 00:22:16] 2025-10-12 04:21:43,396 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 00:22:16] 2025-10-12 04:21:43,396 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 00:22:16] 2025-10-12 04:21:43,396 | INFO     | job 6838850647 has completed (purged errors)
[2025-10-12 00:22:16] 2025-10-12 04:21:43,396 | INFO     | overall cleanup function is called
[2025-10-12 00:22:16] 2025-10-12 04:21:44,400 | INFO     | --- collectZombieJob: --- 10, [11521]
[2025-10-12 00:22:16] 2025-10-12 04:21:44,400 | INFO     | zombie collector waiting for pid 11521
[2025-10-12 00:22:16] 2025-10-12 04:21:44,400 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 00:22:16] 2025-10-12 04:21:44,400 | INFO     | collected zombie processes
[2025-10-12 00:22:16] 2025-10-12 04:21:44,401 | INFO     | will attempt to kill all subprocesses of pid=11521
[2025-10-12 00:22:16] 2025-10-12 04:21:44,520 | INFO     | process IDs to be killed: [11521] (in reverse order)
[2025-10-12 00:22:16] 2025-10-12 04:21:44,577 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 00:22:16] 2025-10-12 04:21:44,578 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 00:22:16] 2025-10-12 04:21:44,580 | INFO     | did not find any defunct processes belonging to 11521
[2025-10-12 00:22:16] 2025-10-12 04:21:44,583 | INFO     | did not find any defunct processes belonging to 11521
[2025-10-12 00:22:16] 2025-10-12 04:21:44,583 | INFO     | ready for new job
[2025-10-12 00:22:16] 2025-10-12 04:21:44,583 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 00:22:16] 2025-10-12 04:21:44,585 | INFO     | ***************************************
[2025-10-12 00:22:16] 2025-10-12 04:21:44,585 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 00:22:16] 2025-10-12 04:21:44,585 | INFO     | ***************************************
[2025-10-12 00:22:16] 2025-10-12 04:21:44,585 | INFO     | 
[2025-10-12 00:22:16] 2025-10-12 04:21:44,586 | INFO     | architecture information:
[2025-10-12 00:22:16] 2025-10-12 04:21:44,586 | INFO     | executing command: cat /etc/os-release
[2025-10-12 00:22:16] 2025-10-12 04:21:44,599 | INFO     | cat /etc/os-release:
[2025-10-12 00:22:16] NAME="CentOS Linux"
[2025-10-12 00:22:16] VERSION="7 (Core)"
[2025-10-12 00:22:16] ID="centos"
[2025-10-12 00:22:16] ID_LIKE="rhel fedora"
[2025-10-12 00:22:16] VERSION_ID="7"
[2025-10-12 00:22:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 00:22:16] ANSI_COLOR="0;31"
[2025-10-12 00:22:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 00:22:16] HOME_URL="https://www.centos.org/"
[2025-10-12 00:22:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 00:22:16] 
[2025-10-12 00:22:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 00:22:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 00:22:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 00:22:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 00:22:16] 
[2025-10-12 00:22:16] 2025-10-12 04:21:44,599 | INFO     | ***************************************
[2025-10-12 00:22:16] 2025-10-12 04:21:45,103 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 00:22:16] 2025-10-12 04:21:45,121 | INFO     | sufficient remaining disk space (32761708544 B)
[2025-10-12 00:22:16] 2025-10-12 04:21:45,121 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 00:22:16] 2025-10-12 04:21:45,121 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 00:22:16] 2025-10-12 04:21:45,122 | INFO     | update_server=False
[2025-10-12 00:22:16] 2025-10-12 04:21:45,122 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 00:22:16] 2025-10-12 04:21:45,122 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 00:22:16] 2025-10-12 04:21:45,122 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 00:22:16] 2025-10-12 04:21:45,123 | INFO     | aborting loop
[2025-10-12 00:22:16] 2025-10-12 04:21:45,399 | INFO     | all data control threads have been joined
[2025-10-12 00:22:16] 2025-10-12 04:21:45,803 | INFO     | all job control threads have been joined
[2025-10-12 00:22:16] 2025-10-12 04:21:45,804 | INFO     | all payload control threads have been joined
[2025-10-12 00:22:16] 2025-10-12 04:21:46,127 | INFO     | [job] retrieve thread has finished
[2025-10-12 00:22:16] 2025-10-12 04:21:46,128 | INFO     | [job] job monitor thread has finished
[2025-10-12 00:22:16] 2025-10-12 04:21:46,233 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 00:22:16] 2025-10-12 04:21:46,312 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 00:22:16] 2025-10-12 04:21:46,404 | INFO     | [data] control thread has finished
[2025-10-12 00:22:16] 2025-10-12 04:21:46,485 | INFO     | [data] copytool_in thread has finished
[2025-10-12 00:22:16] 2025-10-12 04:21:46,497 | INFO     | [payload] validate_post thread has finished
[2025-10-12 00:22:16] 2025-10-12 04:21:46,670 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 00:22:16] 2025-10-12 04:21:46,808 | INFO     | [job] control thread has finished
[2025-10-12 00:22:16] 2025-10-12 04:21:46,809 | INFO     | [payload] control thread has finished
[2025-10-12 00:22:16] 2025-10-12 04:21:46,886 | INFO     | [payload] failed_post thread has finished
[2025-10-12 00:22:16] 2025-10-12 04:21:47,128 | INFO     | [data] copytool_out thread has finished
[2025-10-12 00:22:16] 2025-10-12 04:21:47,163 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 00:22:16] 2025-10-12 04:21:47,421 | INFO     | [job] validate thread has finished
[2025-10-12 00:22:16] 2025-10-12 04:21:48,111 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 00:22:16] 2025-10-12 04:21:49,117 | INFO     | [job] queue monitor thread has finished
[2025-10-12 00:22:16] 2025-10-12 04:21:50,677 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 00:22:16] 2025-10-12 04:21:52,478 | INFO     | [monitor] cgroup control has ended
[2025-10-12 00:22:16] 2025-10-12 04:21:55,923 | INFO     | job.realtimelogging is not enabled
[2025-10-12 00:22:16] 2025-10-12 04:21:56,926 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 00:22:16] 2025-10-12 04:21:57,173 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139858972620608)>', '<ExcThread(monitor, started 139858529990400)>']
[2025-10-12 00:22:16] 2025-10-12 04:22:02,198 | INFO     | all workflow threads have been joined
[2025-10-12 00:22:16] 2025-10-12 04:22:02,199 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 00:22:16] 2025-10-12 04:22:02,199 | INFO     | traces error code: 0
[2025-10-12 00:22:16] 2025-10-12 04:22:02,200 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 00:22:16] 2025-10-12 04:22:15,856 | INFO     | PID=5091 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 00:22:16] 2025-10-12 04:22:15,856 | INFO     | .. there are 2 such processes running
[2025-10-12 00:22:16] 2025-10-12 04:22:15,856 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 00:22:16] 2025-10-12 04:22:15,856 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 00:22:16] 2025-10-12 04:22:15,857 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 00:22:16] 2025-10-12 04:22:15,857 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 00:22:16] 2025-10-12 04:22:15,857 | CRITICAL | thread 'MainThread' is not alive
[2025-10-12 00:22:16] 2025-10-12 04:22:15,857 | INFO     | [monitor] control thread has ended
[2025-10-12 00:22:16] 2025-10-12 04:22:15,974 [wrapper] ==== pilot stdout END ====
[2025-10-12 00:22:16] 2025-10-12 04:22:15,978 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 00:22:16] 2025-10-12 04:22:15,981 [wrapper] pilotpid: 5091
[2025-10-12 00:22:16] 2025-10-12 04:22:15,984 [wrapper] Pilot exit status: 0
[2025-10-12 00:22:16] 2025-10-12 04:22:15,996 [wrapper] pandaids: 6838850647
[2025-10-12 00:22:16] 2025-10-12 04:22:16,023 [wrapper] cleanup supervisor_pilot 24067 5092
[2025-10-12 00:22:16] 2025-10-12 04:22:16,027 [wrapper] Test setup, not cleaning
[2025-10-12 00:22:16] 2025-10-12 04:22:16,030 [wrapper] apfmon messages muted
[2025-10-12 00:22:16] 2025-10-12 04:22:16,033 [wrapper] ==== wrapper stdout END ====
[2025-10-12 00:22:16] 2025-10-12 04:22:16,036 [wrapper] ==== wrapper stderr END ====
[2025-10-12 00:22:16]  *** Error codes and diagnostics ***
[2025-10-12 00:22:16]     "exeErrorCode": 0,
[2025-10-12 00:22:16]     "exeErrorDiag": "",
[2025-10-12 00:22:16]     "pilotErrorCode": 0,
[2025-10-12 00:22:16]     "pilotErrorDiag": "",
[2025-10-12 00:22:16]  *** Listing of results directory ***
[2025-10-12 00:22:16] total 417432
[2025-10-12 00:22:16] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 15:02 pilot3.tar.gz
[2025-10-12 00:22:16] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 15:05 queuedata.json
[2025-10-12 00:22:16] -rwx------ 1 boincer umatlas     36292 Oct 11 15:05 runpilot2-wrapper.sh
[2025-10-12 00:22:16] -rw-r--r-- 1 boincer umatlas       100 Oct 11 23:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 00:22:16] -rwxr-xr-x 1 boincer umatlas      7986 Oct 11 23:11 run_atlas
[2025-10-12 00:22:16] -rw-r--r-- 1 boincer umatlas       105 Oct 11 23:11 job.xml
[2025-10-12 00:22:16] -rw-r--r-- 2 boincer umatlas 222042639 Oct 11 23:11 EVNT.46676267._002544.pool.root.1
[2025-10-12 00:22:16] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 23:11 start_atlas.sh
[2025-10-12 00:22:16] drwxrwx--x 2 boincer umatlas      4096 Oct 11 23:11 shared
[2025-10-12 00:22:16] -rw-r--r-- 2 boincer umatlas    569682 Oct 11 23:11 input.tar.gz
[2025-10-12 00:22:16] -rw-r--r-- 1 boincer umatlas         0 Oct 11 23:11 boinc_lockfile
[2025-10-12 00:22:16] -rw-r--r-- 1 boincer umatlas      2550 Oct 11 23:11 pandaJob.out
[2025-10-12 00:22:16] -rw------- 1 boincer umatlas    975496 Oct 11 23:11 agis_schedconf.cvmfs.json
[2025-10-12 00:22:16] -rw------- 1 boincer umatlas   1560580 Oct 11 23:11 agis_ddmendpoints.agis.ALL.json
[2025-10-12 00:22:16] drwx------ 5 boincer umatlas      4096 Oct 11 23:11 pilot3
[2025-10-12 00:22:16] -rw------- 1 boincer umatlas 199598340 Oct 12 00:21 HITS.46676269._063323.pool.root.1
[2025-10-12 00:22:16] -rw-r--r-- 1 boincer umatlas       529 Oct 12 00:21 boinc_task_state.xml
[2025-10-12 00:22:16] -rw------- 1 boincer umatlas      1046 Oct 12 00:21 memory_monitor_summary.json
[2025-10-12 00:22:16] -rw------- 1 boincer umatlas    326840 Oct 12 00:21 log.46676269._063323.job.log.tgz.1
[2025-10-12 00:22:16] -rw------- 1 boincer umatlas        95 Oct 12 00:21 pilot_heartbeat.json
[2025-10-12 00:22:16] -rw------- 1 boincer umatlas      7832 Oct 12 00:21 heartbeat.json
[2025-10-12 00:22:16] -rw-r--r-- 1 boincer umatlas      6135 Oct 12 00:22 init_data.xml
[2025-10-12 00:22:16] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 00:22 boinc_mmap_file
[2025-10-12 00:22:16] -rw-r--r-- 1 boincer umatlas        27 Oct 12 00:22 wrapper_checkpoint.txt
[2025-10-12 00:22:16] -rw------- 1 boincer umatlas       889 Oct 12 00:22 pilotlog.txt
[2025-10-12 00:22:16] -rw------- 1 boincer umatlas    627494 Oct 12 00:22 log.46676269._063323.job.log.1
[2025-10-12 00:22:16] -rw------- 1 boincer umatlas       357 Oct 12 00:22 output.list
[2025-10-12 00:22:16] -rw-r--r-- 1 boincer umatlas       620 Oct 12 00:22 runtime_log
[2025-10-12 00:22:16] -rw------- 1 boincer umatlas    972800 Oct 12 00:22 result.tar.gz
[2025-10-12 00:22:16] -rw-r--r-- 1 boincer umatlas      8703 Oct 12 00:22 runtime_log.err
[2025-10-12 00:22:16] -rw------- 1 boincer umatlas       658 Oct 12 00:22 5WuMDmF5tR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmUQSMDm9zxpQm.diag
[2025-10-12 00:22:16] -rw-r--r-- 1 boincer umatlas     22388 Oct 12 00:22 stderr.txt
[2025-10-12 00:22:16] HITS file was successfully produced:
[2025-10-12 00:22:16] -rw------- 1 boincer umatlas 199598340 Oct 12 00:21 shared/HITS.pool.root.1
[2025-10-12 00:22:16]  *** Contents of shared directory: ***
[2025-10-12 00:22:16] total 413296
[2025-10-12 00:22:16] -rw-r--r-- 2 boincer umatlas 222042639 Oct 11 23:11 ATLAS.root_0
[2025-10-12 00:22:16] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 23:11 start_atlas.sh
[2025-10-12 00:22:16] -rw-r--r-- 2 boincer umatlas    569682 Oct 11 23:11 input.tar.gz
[2025-10-12 00:22:16] -rw------- 1 boincer umatlas 199598340 Oct 12 00:21 HITS.pool.root.1
[2025-10-12 00:22:16] -rw------- 1 boincer umatlas    972800 Oct 12 00:22 result.tar.gz
00:22:17 (1243): run_atlas exited; CPU time 30697.658613
00:22:17 (1243): called boinc_finish(0)

</stderr_txt>
]]>

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