Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:13:49 (1783782): wrapper (7.7.26015): starting
14:13:49 (1783782): wrapper: running run_atlas (--nthreads 2)
[2025-10-12 14:13:49] Arguments: --nthreads 2
[2025-10-12 14:13:49] Threads: 2
[2025-10-12 14:13:49] Checking for CVMFS
[2025-10-12 14:13:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 14:13:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 14:13:50] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 14:13:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 14:13:50] 2.9.2.0 779100 4365 59568 151619 1 57 19517825 36864000 0 130560 0 2652825 99.989 146325 826 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 14:13:50] CVMFS is ok
[2025-10-12 14:13:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 14:13:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 14:13:50] Further information can be found at the LHC@home message board.
[2025-10-12 14:13:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 14:13:50] Checking for apptainer binary...
[2025-10-12 14:13:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 14:13:50] Running /usr/bin/apptainer --version
[2025-10-12 14:13:50] apptainer version 1.4.1-1.1
[2025-10-12 14:13:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 14:13:50] atlasA229
[2025-10-12 14:13:50] apptainer works
[2025-10-12 14:13:50] Set ATHENA_PROC_NUMBER=2
[2025-10-12 14:13:50] Set ATHENA_CORE_NUMBER=2
[2025-10-12 14:13:50] Starting ATLAS job with PandaID=6839163954
[2025-10-12 14:13:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 16:15:19]  *** The last 200 lines of the pilot log: ***
[2025-10-12 16:15:19] 2025-10-12 14:14:34,522 | INFO     | --- collectZombieJob: --- 10, [1793894]
[2025-10-12 16:15:19] 2025-10-12 14:14:34,523 | INFO     | zombie collector waiting for pid 1793894
[2025-10-12 16:15:19] 2025-10-12 14:14:34,523 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 16:15:19] 2025-10-12 14:14:34,523 | INFO     | collected zombie processes
[2025-10-12 16:15:19] 2025-10-12 14:14:34,523 | INFO     | will attempt to kill all subprocesses of pid=1793894
[2025-10-12 16:15:19] 2025-10-12 14:14:34,558 | INFO     | process IDs to be killed: [1793894] (in reverse order)
[2025-10-12 16:15:19] 2025-10-12 14:14:34,579 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 16:15:19] 2025-10-12 14:14:34,579 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 16:15:19] 2025-10-12 14:14:34,580 | INFO     | did not find any defunct processes belonging to 1793894
[2025-10-12 16:15:19] 2025-10-12 14:14:34,581 | INFO     | did not find any defunct processes belonging to 1793894
[2025-10-12 16:15:19] 2025-10-12 14:14:34,581 | INFO     | ready for new job
[2025-10-12 16:15:19] 2025-10-12 14:14:34,581 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 16:15:19] 2025-10-12 14:14:34,581 | INFO     | ***************************************
[2025-10-12 16:15:19] 2025-10-12 14:14:34,581 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 16:15:19] 2025-10-12 14:14:34,581 | INFO     | ***************************************
[2025-10-12 16:15:19] 2025-10-12 14:14:34,582 | INFO     | 
[2025-10-12 16:15:19] 2025-10-12 14:14:34,582 | INFO     | architecture information:
[2025-10-12 16:15:19] 2025-10-12 14:14:34,582 | INFO     | executing command: cat /etc/os-release
[2025-10-12 16:15:19] 2025-10-12 14:14:34,591 | INFO     | cat /etc/os-release:
[2025-10-12 16:15:19] NAME="CentOS Linux"
[2025-10-12 16:15:19] VERSION="7 (Core)"
[2025-10-12 16:15:19] ID="centos"
[2025-10-12 16:15:19] ID_LIKE="rhel fedora"
[2025-10-12 16:15:19] VERSION_ID="7"
[2025-10-12 16:15:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 16:15:19] ANSI_COLOR="0;31"
[2025-10-12 16:15:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 16:15:19] HOME_URL="https://www.centos.org/"
[2025-10-12 16:15:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 16:15:19] 
[2025-10-12 16:15:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 16:15:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 16:15:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 16:15:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 16:15:19] 
[2025-10-12 16:15:19] 2025-10-12 14:14:34,591 | INFO     | ***************************************
[2025-10-12 16:15:19] 2025-10-12 14:14:35,093 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 16:15:19] 2025-10-12 14:14:35,106 | INFO     | sufficient remaining disk space (341201387520 B)
[2025-10-12 16:15:19] 2025-10-12 14:14:35,106 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 16:15:19] 2025-10-12 14:14:35,106 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 16:15:19] 2025-10-12 14:14:35,106 | INFO     | update_server=False
[2025-10-12 16:15:19] 2025-10-12 14:14:35,106 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 16:15:19] 2025-10-12 14:14:35,106 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:15:19] 2025-10-12 14:14:35,106 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 16:15:19] 2025-10-12 14:14:35,129 | INFO     | all payload control threads have been joined
[2025-10-12 16:15:19] 2025-10-12 14:14:35,578 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 16:15:19] 2025-10-12 14:14:35,578 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 16:15:19] 2025-10-12 14:14:35,579 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:15:19] 2025-10-12 14:14:35,579 | INFO     | will abort loop
[2025-10-12 16:15:19] 2025-10-12 14:14:35,748 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 16:15:19] 2025-10-12 14:14:35,875 | INFO     | all data control threads have been joined
[2025-10-12 16:15:19] 2025-10-12 14:14:36,078 | INFO     | all job control threads have been joined
[2025-10-12 16:15:19] 2025-10-12 14:14:36,112 | INFO     | [job] retrieve thread has finished
[2025-10-12 16:15:19] 2025-10-12 14:14:36,112 | INFO     | [job] queue monitor thread has finished
[2025-10-12 16:15:19] 2025-10-12 14:14:36,134 | INFO     | [payload] control thread has finished
[2025-10-12 16:15:19] 2025-10-12 14:14:36,357 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 16:15:19] 2025-10-12 14:14:36,537 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 16:15:19] 2025-10-12 14:14:36,585 | INFO     | [job] job monitor thread has finished
[2025-10-12 16:15:19] 2025-10-12 14:14:36,693 | INFO     | [job] validate thread has finished
[2025-10-12 16:15:19] 2025-10-12 14:14:36,880 | INFO     | [data] control thread has finished
[2025-10-12 16:15:19] 2025-10-12 14:14:36,934 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 16:15:19] 2025-10-12 14:14:37,084 | INFO     | [job] control thread has finished
[2025-10-12 16:15:19] 2025-10-12 14:14:37,278 | INFO     | [data] copytool_in thread has finished
[2025-10-12 16:15:19] 2025-10-12 14:14:37,292 | INFO     | [payload] validate_post thread has finished
[2025-10-12 16:15:19] 2025-10-12 14:14:37,546 | INFO     | [payload] failed_post thread has finished
[2025-10-12 16:15:19] 2025-10-12 14:14:37,755 | INFO     | [data] copytool_out thread has finished
[2025-10-12 16:15:19] 2025-10-12 14:14:39,113 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 16:15:19] 2025-10-12 14:14:45,749 | INFO     | job.realtimelogging is not enabled
[2025-10-12 16:15:19] 2025-10-12 14:14:46,754 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 16:15:19] 2025-10-12 14:15:04,766 | INFO     | PID=1787481 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 16:15:19] 2025-10-12 14:15:04,766 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 16:15:19] 2025-10-12 14:15:04,767 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 16:15:19] 2025-10-12 14:15:04,767 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 16:15:19] 2025-10-12 14:15:12,725 | INFO     | [monitor] cgroup control has ended
[2025-10-12 16:15:19] 2025-10-12 14:15:14,619 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140166647482176)>', '<ExcThread(monitor, started 140165745977088)>']
[2025-10-12 16:15:19] 2025-10-12 14:15:14,820 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 16:15:19] 2025-10-12 14:15:14,821 | INFO     | [monitor] control thread has ended
[2025-10-12 16:15:19] 2025-10-12 14:15:19,651 | INFO     | all workflow threads have been joined
[2025-10-12 16:15:19] 2025-10-12 14:15:19,653 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 16:15:19] 2025-10-12 14:15:19,653 | INFO     | traces error code: 0
[2025-10-12 16:15:19] 2025-10-12 14:15:19,653 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 16:15:19] 2025-10-12 14:15:19,733 [wrapper] ==== pilot stdout END ====
[2025-10-12 16:15:19] 2025-10-12 14:15:19,736 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 16:15:19] 2025-10-12 14:15:19,738 [wrapper] pilotpid: 1787481
[2025-10-12 16:15:19] 2025-10-12 14:15:19,741 [wrapper] Pilot exit status: 0
[2025-10-12 16:15:19] 2025-10-12 14:15:19,747 [wrapper] pandaids: 6839163954
[2025-10-12 16:15:19] 2025-10-12 14:15:19,770 [wrapper] cleanup supervisor_pilot 1807811 1787482
[2025-10-12 16:15:19] 2025-10-12 14:15:19,772 [wrapper] Test setup, not cleaning
[2025-10-12 16:15:19] 2025-10-12 14:15:19,774 [wrapper] apfmon messages muted
[2025-10-12 16:15:19] 2025-10-12 14:15:19,776 [wrapper] ==== wrapper stdout END ====
[2025-10-12 16:15:19] 2025-10-12 14:15:19,779 [wrapper] ==== wrapper stderr END ====
[2025-10-12 16:15:19]  *** Error codes and diagnostics ***
[2025-10-12 16:15:19]     "exeErrorCode": 0,
[2025-10-12 16:15:19]     "exeErrorDiag": "",
[2025-10-12 16:15:19]     "pilotErrorCode": 0,
[2025-10-12 16:15:19]     "pilotErrorDiag": "",
[2025-10-12 16:15:19]  *** Listing of results directory ***
[2025-10-12 16:15:19] total 407940
[2025-10-12 16:15:19] -rw-r--r-- 1 boinc boinc    557409 Oct 12 02:05 pilot3.tar.gz
[2025-10-12 16:15:19] -rwx------ 1 boinc boinc     36292 Oct 12 02:30 runpilot2-wrapper.sh
[2025-10-12 16:15:19] -rw-r--r-- 1 boinc boinc      5112 Oct 12 02:30 queuedata.json
[2025-10-12 16:15:19] -rw-r--r-- 1 boinc boinc       100 Oct 12 14:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 16:15:19] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 14:13 run_atlas
[2025-10-12 16:15:19] -rw-r--r-- 1 boinc boinc       105 Oct 12 14:13 job.xml
[2025-10-12 16:15:19] -rw-r--r-- 2 boinc boinc 220124248 Oct 12 14:13 EVNT.46676267._002771.pool.root.1
[2025-10-12 16:15:19] -rw-r--r-- 2 boinc boinc    569672 Oct 12 14:13 input.tar.gz
[2025-10-12 16:15:19] -rw-r--r-- 2 boinc boinc     15120 Oct 12 14:13 start_atlas.sh
[2025-10-12 16:15:19] drwxrwx--x 2 boinc boinc      4096 Oct 12 14:13 shared
[2025-10-12 16:15:19] -rw-r--r-- 1 boinc boinc         0 Oct 12 14:13 boinc_setup_complete
[2025-10-12 16:15:19] -rw-r--r-- 1 boinc boinc      6206 Oct 12 14:13 init_data.xml
[2025-10-12 16:15:19] -rw-r--r-- 1 boinc boinc         0 Oct 12 14:13 boinc_lockfile
[2025-10-12 16:15:19] -rw-r--r-- 1 boinc boinc      2550 Oct 12 14:13 pandaJob.out
[2025-10-12 16:15:19] -rw------- 1 boinc boinc    975520 Oct 12 14:14 agis_schedconf.cvmfs.json
[2025-10-12 16:15:19] -rw------- 1 boinc boinc   1560580 Oct 12 14:14 agis_ddmendpoints.agis.ALL.json
[2025-10-12 16:15:19] drwx------ 5 boinc boinc      4096 Oct 12 14:14 pilot3
[2025-10-12 16:15:19] -rw------- 1 boinc boinc 191093277 Oct 12 16:14 HITS.46676269._067658.pool.root.1
[2025-10-12 16:15:19] -rw-r--r-- 1 boinc boinc       530 Oct 12 16:14 boinc_task_state.xml
[2025-10-12 16:15:19] -rw------- 1 boinc boinc      1016 Oct 12 16:14 memory_monitor_summary.json
[2025-10-12 16:15:19] -rw------- 1 boinc boinc    268113 Oct 12 16:14 log.46676269._067658.job.log.tgz.1
[2025-10-12 16:15:19] -rw------- 1 boinc boinc      7763 Oct 12 16:14 heartbeat.json
[2025-10-12 16:15:19] -rw------- 1 boinc boinc        95 Oct 12 16:15 pilot_heartbeat.json
[2025-10-12 16:15:19] -rw-r--r-- 1 boinc boinc      8192 Oct 12 16:15 boinc_mmap_file
[2025-10-12 16:15:19] -rw-r--r-- 1 boinc boinc        27 Oct 12 16:15 wrapper_checkpoint.txt
[2025-10-12 16:15:19] -rw------- 1 boinc boinc      5010 Oct 12 16:15 pilotlog.txt
[2025-10-12 16:15:19] -rw------- 1 boinc boinc   1040232 Oct 12 16:15 log.46676269._067658.job.log.1
[2025-10-12 16:15:19] -rw------- 1 boinc boinc       357 Oct 12 16:15 output.list
[2025-10-12 16:15:19] -rw-r--r-- 1 boinc boinc       620 Oct 12 16:15 runtime_log
[2025-10-12 16:15:19] -rw------- 1 boinc boinc   1331200 Oct 12 16:15 result.tar.gz
[2025-10-12 16:15:19] -rw-r--r-- 1 boinc boinc      8792 Oct 12 16:15 runtime_log.err
[2025-10-12 16:15:19] -rw------- 1 boinc boinc       662 Oct 12 16:15 paxLDm29yR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmYrSMDmOQASAn.diag
[2025-10-12 16:15:19] -rw-r--r-- 1 boinc boinc     10939 Oct 12 16:15 stderr.txt
[2025-10-12 16:15:19] HITS file was successfully produced:
[2025-10-12 16:15:19] -rw------- 1 boinc boinc 191093277 Oct 12 16:14 shared/HITS.pool.root.1
[2025-10-12 16:15:19]  *** Contents of shared directory: ***
[2025-10-12 16:15:19] total 403468
[2025-10-12 16:15:19] -rw-r--r-- 2 boinc boinc 220124248 Oct 12 14:13 ATLAS.root_0
[2025-10-12 16:15:19] -rw-r--r-- 2 boinc boinc    569672 Oct 12 14:13 input.tar.gz
[2025-10-12 16:15:19] -rw-r--r-- 2 boinc boinc     15120 Oct 12 14:13 start_atlas.sh
[2025-10-12 16:15:19] -rw------- 1 boinc boinc 191093277 Oct 12 16:14 HITS.pool.root.1
[2025-10-12 16:15:19] -rw------- 1 boinc boinc   1331200 Oct 12 16:15 result.tar.gz
16:15:21 (1783782): run_atlas exited; CPU time 14055.140321
16:15:21 (1783782): called boinc_finish(0)

</stderr_txt>
]]>

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