Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:34:48 (30286): wrapper (7.7.26015): starting
22:34:48 (30286): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 22:34:48] Arguments: --nthreads 8
[2025-10-11 22:34:48] Threads: 8
[2025-10-11 22:34:48] Checking for CVMFS
[2025-10-11 22:34:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 22:34:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 22:34:48] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 22:34:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 22:34:49] 2.11.2.0 2840 2241 73520 151604 2 59 11043212 20275200 1 130560 0 1561194 99.990 77147 36033 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 22:34:49] CVMFS is ok
[2025-10-11 22:34:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 22:34:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 22:34:49] Further information can be found at the LHC@home message board.
[2025-10-11 22:34:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 22:34:49] Checking for apptainer binary...
[2025-10-11 22:34:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 22:34:49] Running /usr/bin/apptainer --version
[2025-10-11 22:34:49] apptainer version 1.3.2-1.el7
[2025-10-11 22:34:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 22:34:50] c-204-39.aglt2.org
[2025-10-11 22:34:50] apptainer works
[2025-10-11 22:34:50] Set ATHENA_PROC_NUMBER=8
[2025-10-11 22:34:50] Set ATHENA_CORE_NUMBER=8
[2025-10-11 22:34:50] Starting ATLAS job with PandaID=6838988750
[2025-10-11 22:34:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:46:28 (28889): wrapper (7.7.26015): starting
23:46:28 (28889): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 23:46:28] Arguments: --nthreads 8
[2025-10-11 23:46:28] Threads: 8
[2025-10-11 23:46:28] This job has been restarted, cleaning up previous attempt
[2025-10-11 23:46:28] Checking for CVMFS
[2025-10-11 23:46:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 23:46:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 23:46:28] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 23:46:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 23:46:28] 2.11.2.0 2840 2313 74372 151606 2 18 11123044 20275201 1 130560 0 1632984 99.990 79918 35773 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 23:46:28] CVMFS is ok
[2025-10-11 23:46:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 23:46:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 23:46:28] Further information can be found at the LHC@home message board.
[2025-10-11 23:46:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 23:46:28] Checking for apptainer binary...
[2025-10-11 23:46:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 23:46:28] Running /usr/bin/apptainer --version
[2025-10-11 23:46:28] apptainer version 1.3.2-1.el7
[2025-10-11 23:46:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 23:46:30] c-204-39.aglt2.org
[2025-10-11 23:46:30] apptainer works
[2025-10-11 23:46:30] Set ATHENA_PROC_NUMBER=8
[2025-10-11 23:46:30] Set ATHENA_CORE_NUMBER=8
[2025-10-11 23:46:30] Starting ATLAS job with PandaID=6838988750
[2025-10-11 23:46:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 01:53:24]  *** The last 200 lines of the pilot log: ***
[2025-10-12 01:53:24] 2025-10-12 05:52:52,206 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 01:53:24] 2025-10-12 05:52:52,206 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 01:53:24] 2025-10-12 05:52:52,206 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 01:53:24] 2025-10-12 05:52:52,206 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 01:53:24] 2025-10-12 05:52:52,209 | INFO     | fitting pss+swap vs Time
[2025-10-12 01:53:24] 2025-10-12 05:52:52,210 | INFO     | sum of square deviations: 591173875.0
[2025-10-12 01:53:24] 2025-10-12 05:52:52,210 | INFO     | sum of deviations: 2996509648.999998
[2025-10-12 01:53:24] 2025-10-12 05:52:52,210 | INFO     | mean x: 1760244589.5
[2025-10-12 01:53:24] 2025-10-12 05:52:52,211 | INFO     | mean y: 2500247.870967742
[2025-10-12 01:53:24] 2025-10-12 05:52:52,211 | INFO     | -- intersect: -8919730791.240479
[2025-10-12 01:53:24] 2025-10-12 05:52:52,211 | INFO     | intersect: -8919730791.240479
[2025-10-12 01:53:24] 2025-10-12 05:52:52,211 | INFO     | chi2: 2.2511468823236775
[2025-10-12 01:53:24] 2025-10-12 05:52:52,212 | INFO     | sum of square deviations: 522502820.0
[2025-10-12 01:53:24] 2025-10-12 05:52:52,212 | INFO     | sum of deviations: 10939223513.0
[2025-10-12 01:53:24] 2025-10-12 05:52:52,212 | INFO     | mean x: 1760244437.0
[2025-10-12 01:53:24] 2025-10-12 05:52:52,212 | INFO     | mean y: 2517286.6470588236
[2025-10-12 01:53:24] 2025-10-12 05:52:52,213 | INFO     | -- intersect: -36850312204.02985
[2025-10-12 01:53:24] 2025-10-12 05:52:52,213 | INFO     | intersect: -36850312204.02985
[2025-10-12 01:53:24] 2025-10-12 05:52:52,213 | INFO     | chi2: 1.488581947865697
[2025-10-12 01:53:24] 2025-10-12 05:52:52,213 | INFO     | current chi2=1.488581947865697 (change=33.874508164960176 %)
[2025-10-12 01:53:24] 2025-10-12 05:52:52,213 | INFO     | sum of square deviations: 459366752.5
[2025-10-12 01:53:24] 2025-10-12 05:52:52,214 | INFO     | sum of deviations: 10448127915.500002
[2025-10-12 01:53:24] 2025-10-12 05:52:52,214 | INFO     | mean x: 1760244284.5
[2025-10-12 01:53:24] 2025-10-12 05:52:52,214 | INFO     | mean y: 2516099.6578947366
[2025-10-12 01:53:24] 2025-10-12 05:52:52,214 | INFO     | -- intersect: -40033593059.07748
[2025-10-12 01:53:24] 2025-10-12 05:52:52,215 | INFO     | intersect: -40033593059.07748
[2025-10-12 01:53:24] 2025-10-12 05:52:52,215 | INFO     | chi2: 1.4913028504275367
[2025-10-12 01:53:24] 2025-10-12 05:52:52,215 | INFO     | current chi2=1.4913028504275367 (change=-0.1827848688976075 %)
[2025-10-12 01:53:24] 2025-10-12 05:52:52,215 | INFO     | right removable region: 113
[2025-10-12 01:53:24] 2025-10-12 05:52:52,215 | INFO     | sum of square deviations: 522502820.0
[2025-10-12 01:53:24] 2025-10-12 05:52:52,216 | INFO     | sum of deviations: -14715785485.0
[2025-10-12 01:53:24] 2025-10-12 05:52:52,216 | INFO     | mean x: 1760244742.0
[2025-10-12 01:53:24] 2025-10-12 05:52:52,216 | INFO     | mean y: 2538810.2016806724
[2025-10-12 01:53:24] 2025-10-12 05:52:52,216 | INFO     | -- intersect: 49578125836.451935
[2025-10-12 01:53:24] 2025-10-12 05:52:52,216 | INFO     | intersect: 49578125836.451935
[2025-10-12 01:53:24] 2025-10-12 05:52:52,217 | INFO     | chi2: 0.8792073982705461
[2025-10-12 01:53:24] 2025-10-12 05:52:52,217 | INFO     | current chi2=0.8792073982705461 (change=60.94402345869982 %)
[2025-10-12 01:53:24] 2025-10-12 05:52:52,217 | INFO     | sum of square deviations: 459366752.5
[2025-10-12 01:53:24] 2025-10-12 05:52:52,218 | INFO     | sum of deviations: -12193397543.0
[2025-10-12 01:53:24] 2025-10-12 05:52:52,218 | INFO     | mean x: 1760244894.5
[2025-10-12 01:53:24] 2025-10-12 05:52:52,218 | INFO     | mean y: 2532611.50877193
[2025-10-12 01:53:24] 2025-10-12 05:52:52,218 | INFO     | -- intersect: 46726344587.158
[2025-10-12 01:53:24] 2025-10-12 05:52:52,218 | INFO     | intersect: 46726344587.158
[2025-10-12 01:53:24] 2025-10-12 05:52:52,218 | INFO     | chi2: 0.864404701616235
[2025-10-12 01:53:24] 2025-10-12 05:52:52,219 | INFO     | current chi2=0.864404701616235 (change=1.6836410479971968 %)
[2025-10-12 01:53:24] 2025-10-12 05:52:52,219 | INFO     | left removable region: 20
[2025-10-12 01:53:24] 2025-10-12 05:52:52,219 | INFO     | sum of square deviations: 249388862.0
[2025-10-12 01:53:24] 2025-10-12 05:52:52,219 | INFO     | sum of deviations: 1528713191.9999998
[2025-10-12 01:53:24] 2025-10-12 05:52:52,220 | INFO     | mean x: 1760244864.0
[2025-10-12 01:53:24] 2025-10-12 05:52:52,220 | INFO     | mean y: 2534239.129032258
[2025-10-12 01:53:24] 2025-10-12 05:52:52,220 | INFO     | -- intersect: -10787480692.440147
[2025-10-12 01:53:24] 2025-10-12 05:52:52,220 | INFO     | intersect: -10787480692.440147
[2025-10-12 01:53:24] 2025-10-12 05:52:52,220 | INFO     | chi2: 0.0006513498492967282
[2025-10-12 01:53:24] 2025-10-12 05:52:52,220 | INFO     | -- intersect: -10787480692.440147
[2025-10-12 01:53:24] 2025-10-12 05:52:52,221 | INFO     | current memory leak: 6.13 B/s (using 93 data points, chi2=0.00)
[2025-10-12 01:53:24] 2025-10-12 05:52:52,221 | INFO     | could have reported an average CPU frequency of 2001 MHz (8 samples)
[2025-10-12 01:53:24] 2025-10-12 05:52:52,221 | INFO     | ..............................
[2025-10-12 01:53:24] 2025-10-12 05:52:52,221 | INFO     | . Timing measurements:
[2025-10-12 01:53:24] 2025-10-12 05:52:52,221 | INFO     | . get job = 0 s
[2025-10-12 01:53:24] 2025-10-12 05:52:52,222 | INFO     | . initial setup = 1 s
[2025-10-12 01:53:24] 2025-10-12 05:52:52,222 | INFO     | . payload setup = 8 s
[2025-10-12 01:53:24] 2025-10-12 05:52:52,222 | INFO     | . stage-in = 0 s
[2025-10-12 01:53:24] 2025-10-12 05:52:52,222 | INFO     | . payload execution = 7522 s
[2025-10-12 01:53:24] 2025-10-12 05:52:52,222 | INFO     | . stage-out = 2 s
[2025-10-12 01:53:24] 2025-10-12 05:52:52,222 | INFO     | . log creation = 0 s
[2025-10-12 01:53:24] 2025-10-12 05:52:52,222 | INFO     | ..............................
[2025-10-12 01:53:24] 2025-10-12 05:52:52,512 | INFO     | 
[2025-10-12 01:53:24] 2025-10-12 05:52:52,512 | INFO     | job summary report
[2025-10-12 01:53:24] 2025-10-12 05:52:52,512 | INFO     | --------------------------------------------------
[2025-10-12 01:53:24] 2025-10-12 05:52:52,513 | INFO     | PanDA job id: 6838988750
[2025-10-12 01:53:24] 2025-10-12 05:52:52,513 | INFO     | task id: 46676269
[2025-10-12 01:53:24] 2025-10-12 05:52:52,513 | INFO     | errors: (none)
[2025-10-12 01:53:24] 2025-10-12 05:52:52,513 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 01:53:24] 2025-10-12 05:52:52,513 | INFO     | pilot state: finished 
[2025-10-12 01:53:24] 2025-10-12 05:52:52,513 | INFO     | transexitcode: 0
[2025-10-12 01:53:24] 2025-10-12 05:52:52,514 | INFO     | exeerrorcode: 0
[2025-10-12 01:53:24] 2025-10-12 05:52:52,514 | INFO     | exeerrordiag: 
[2025-10-12 01:53:24] 2025-10-12 05:52:52,514 | INFO     | exitcode: 0
[2025-10-12 01:53:24] 2025-10-12 05:52:52,514 | INFO     | exitmsg: OK
[2025-10-12 01:53:24] 2025-10-12 05:52:52,514 | INFO     | cpuconsumptiontime: 56326 s
[2025-10-12 01:53:24] 2025-10-12 05:52:52,514 | INFO     | nevents: 400
[2025-10-12 01:53:24] 2025-10-12 05:52:52,515 | INFO     | neventsw: 0
[2025-10-12 01:53:24] 2025-10-12 05:52:52,515 | INFO     | pid: 6852
[2025-10-12 01:53:24] 2025-10-12 05:52:52,515 | INFO     | pgrp: 6852
[2025-10-12 01:53:24] 2025-10-12 05:52:52,515 | INFO     | corecount: 8
[2025-10-12 01:53:24] 2025-10-12 05:52:52,515 | INFO     | event service: False
[2025-10-12 01:53:24] 2025-10-12 05:52:52,515 | INFO     | sizes: {0: 2348857, 1: 2348885, 6: 2349147, 11: 2349175, 7535: 2376720, 7537: 2385718, 7540: 2385902, 7548: 2386096}
[2025-10-12 01:53:24] 2025-10-12 05:52:52,516 | INFO     | --------------------------------------------------
[2025-10-12 01:53:24] 2025-10-12 05:52:52,516 | INFO     | 
[2025-10-12 01:53:24] 2025-10-12 05:52:52,516 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 01:53:24] 2025-10-12 05:52:52,546 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 01:53:24] 2025-10-12 05:52:52,546 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 01:53:24] 2025-10-12 05:52:52,547 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 01:53:24] 2025-10-12 05:52:52,547 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 01:53:24] 2025-10-12 05:52:52,547 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 01:53:24] 2025-10-12 05:52:52,547 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 01:53:24] 2025-10-12 05:52:52,547 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 01:53:24] 2025-10-12 05:52:52,547 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 01:53:24] 2025-10-12 05:52:52,548 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 01:53:24] 2025-10-12 05:52:52,548 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 01:53:24] 2025-10-12 05:52:52,548 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 01:53:24] 2025-10-12 05:52:52,548 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 01:53:24] 2025-10-12 05:52:52,548 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 01:53:24] 2025-10-12 05:52:52,549 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 01:53:24] 2025-10-12 05:52:52,549 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 01:53:24] 2025-10-12 05:52:52,549 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 01:53:24] 2025-10-12 05:52:52,549 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 01:53:24] 2025-10-12 05:52:52,549 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 01:53:24] 2025-10-12 05:52:52,550 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 01:53:24] 2025-10-12 05:52:52,550 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 01:53:24] 2025-10-12 05:52:52,550 | INFO     | job 6838988750 has completed (purged errors)
[2025-10-12 01:53:24] 2025-10-12 05:52:52,550 | INFO     | overall cleanup function is called
[2025-10-12 01:53:24] 2025-10-12 05:52:53,559 | INFO     | --- collectZombieJob: --- 10, [6852]
[2025-10-12 01:53:24] 2025-10-12 05:52:53,559 | INFO     | zombie collector waiting for pid 6852
[2025-10-12 01:53:24] 2025-10-12 05:52:53,559 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 01:53:24] 2025-10-12 05:52:53,560 | INFO     | collected zombie processes
[2025-10-12 01:53:24] 2025-10-12 05:52:53,560 | INFO     | will attempt to kill all subprocesses of pid=6852
[2025-10-12 01:53:24] 2025-10-12 05:52:53,649 | INFO     | process IDs to be killed: [6852] (in reverse order)
[2025-10-12 01:53:24] 2025-10-12 05:52:53,706 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 01:53:24] 2025-10-12 05:52:53,706 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 01:53:24] 2025-10-12 05:52:53,709 | INFO     | did not find any defunct processes belonging to 6852
[2025-10-12 01:53:24] 2025-10-12 05:52:53,712 | INFO     | did not find any defunct processes belonging to 6852
[2025-10-12 01:53:24] 2025-10-12 05:52:53,712 | INFO     | ready for new job
[2025-10-12 01:53:24] 2025-10-12 05:52:53,712 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 01:53:24] 2025-10-12 05:52:53,714 | INFO     | ***************************************
[2025-10-12 01:53:24] 2025-10-12 05:52:53,714 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 01:53:24] 2025-10-12 05:52:53,714 | INFO     | ***************************************
[2025-10-12 01:53:24] 2025-10-12 05:52:53,714 | INFO     | 
[2025-10-12 01:53:24] 2025-10-12 05:52:53,715 | INFO     | architecture information:
[2025-10-12 01:53:24] 2025-10-12 05:52:53,715 | INFO     | executing command: cat /etc/os-release
[2025-10-12 01:53:24] 2025-10-12 05:52:53,736 | INFO     | cat /etc/os-release:
[2025-10-12 01:53:24] NAME="CentOS Linux"
[2025-10-12 01:53:24] VERSION="7 (Core)"
[2025-10-12 01:53:24] ID="centos"
[2025-10-12 01:53:24] ID_LIKE="rhel fedora"
[2025-10-12 01:53:24] VERSION_ID="7"
[2025-10-12 01:53:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 01:53:24] ANSI_COLOR="0;31"
[2025-10-12 01:53:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 01:53:24] HOME_URL="https://www.centos.org/"
[2025-10-12 01:53:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 01:53:24] 
[2025-10-12 01:53:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 01:53:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 01:53:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 01:53:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 01:53:24] 
[2025-10-12 01:53:24] 2025-10-12 05:52:53,736 | INFO     | ***************************************
[2025-10-12 01:53:24] 2025-10-12 05:52:54,239 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 01:53:24] 2025-10-12 05:52:54,261 | INFO     | sufficient remaining disk space (18551406592 B)
[2025-10-12 01:53:24] 2025-10-12 05:52:54,262 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 01:53:24] 2025-10-12 05:52:54,262 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 01:53:24] 2025-10-12 05:52:54,262 | INFO     | update_server=False
[2025-10-12 01:53:24] 2025-10-12 05:52:54,262 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 01:53:24] 2025-10-12 05:52:54,263 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 01:53:24] 2025-10-12 05:52:54,263 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 01:53:24] 2025-10-12 05:52:54,264 | INFO     | aborting loop
[2025-10-12 01:53:24] 2025-10-12 05:52:54,326 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 01:53:24] 2025-10-12 05:52:54,804 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 01:53:24] 2025-10-12 05:52:55,243 | INFO     | all data control threads have been joined
[2025-10-12 01:53:24] 2025-10-12 05:52:55,269 | INFO     | [job] job monitor thread has finished
[2025-10-12 01:53:24] 2025-10-12 05:52:55,270 | INFO     | [job] retrieve thread has finished
[2025-10-12 01:53:24] 2025-10-12 05:52:55,271 | INFO     | [job] queue monitor thread has finished
[2025-10-12 01:53:24] 2025-10-12 05:52:55,311 | INFO     | [job] validate thread has finished
[2025-10-12 01:53:24] 2025-10-12 05:52:55,588 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 01:53:24] 2025-10-12 05:52:55,592 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 01:53:24] 2025-10-12 05:52:55,594 | INFO     | [data] copytool_in thread has finished
[2025-10-12 01:53:24] 2025-10-12 05:52:55,670 | INFO     | all payload control threads have been joined
[2025-10-12 01:53:24] 2025-10-12 05:52:55,744 | INFO     | [payload] validate_post thread has finished
[2025-10-12 01:53:24] 2025-10-12 05:52:55,867 | INFO     | all job control threads have been joined
[2025-10-12 01:53:24] 2025-10-12 05:52:56,155 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 01:53:24] 2025-10-12 05:52:56,249 | INFO     | [data] control thread has finished
[2025-10-12 01:53:24] 2025-10-12 05:52:56,332 | INFO     | [data] copytool_out thread has finished
[2025-10-12 01:53:24] 2025-10-12 05:52:56,675 | INFO     | [payload] control thread has finished
[2025-10-12 01:53:24] 2025-10-12 05:52:56,726 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 01:53:24] 2025-10-12 05:52:56,743 | INFO     | [payload] failed_post thread has finished
[2025-10-12 01:53:24] 2025-10-12 05:52:56,868 | INFO     | [job] control thread has finished
[2025-10-12 01:53:24] 2025-10-12 05:52:58,269 | INFO     | [monitor] cgroup control has ended
[2025-10-12 01:53:24] 2025-10-12 05:52:58,810 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 01:53:24] 2025-10-12 05:52:59,759 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140007454615360)>', '<ExcThread(monitor, started 140006270170880)>']
[2025-10-12 01:53:24] 2025-10-12 05:53:04,785 | INFO     | all workflow threads have been joined
[2025-10-12 01:53:24] 2025-10-12 05:53:04,785 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 01:53:24] 2025-10-12 05:53:04,786 | INFO     | traces error code: 0
[2025-10-12 01:53:24] 2025-10-12 05:53:04,786 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 01:53:24] 2025-10-12 05:53:24,207 | INFO     | PID=32616 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 01:53:24] 2025-10-12 05:53:24,207 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 01:53:24] 2025-10-12 05:53:24,207 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 01:53:24] 2025-10-12 05:53:24,207 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 01:53:24] 2025-10-12 05:53:24,208 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 01:53:24] 2025-10-12 05:53:24,208 | INFO     | [monitor] control thread has ended
[2025-10-12 01:53:24] 2025-10-12 05:53:24,314 [wrapper] ==== pilot stdout END ====
[2025-10-12 01:53:24] 2025-10-12 05:53:24,318 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 01:53:24] 2025-10-12 05:53:24,323 [wrapper] pilotpid: 32616
[2025-10-12 01:53:24] 2025-10-12 05:53:24,327 [wrapper] Pilot exit status: 0
[2025-10-12 01:53:24] 2025-10-12 05:53:24,345 [wrapper] pandaids: 6838988750 6838988750
[2025-10-12 01:53:24] 2025-10-12 05:53:24,390 [wrapper] cleanup supervisor_pilot 28557 32617
[2025-10-12 01:53:24] 2025-10-12 05:53:24,394 [wrapper] Test setup, not cleaning
[2025-10-12 01:53:24] 2025-10-12 05:53:24,399 [wrapper] apfmon messages muted
[2025-10-12 01:53:24] 2025-10-12 05:53:24,404 [wrapper] ==== wrapper stdout END ====
[2025-10-12 01:53:24] 2025-10-12 05:53:24,409 [wrapper] ==== wrapper stderr END ====
[2025-10-12 01:53:24]  *** Error codes and diagnostics ***
[2025-10-12 01:53:24]     "exeErrorCode": 0,
[2025-10-12 01:53:24]     "exeErrorDiag": "",
[2025-10-12 01:53:24]     "pilotErrorCode": 0,
[2025-10-12 01:53:24]     "pilotErrorDiag": "",
[2025-10-12 01:53:24]  *** Listing of results directory ***
[2025-10-12 01:53:24] total 632780
[2025-10-12 01:53:24] drwx------ 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-12 01:53:24] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 17:13 pilot3.tar.gz
[2025-10-12 01:53:24] -rwx------ 1 boincer umatlas     36292 Oct 11 17:17 runpilot2-wrapper.sh
[2025-10-12 01:53:24] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 17:17 queuedata.json
[2025-10-12 01:53:24] -rw-r--r-- 1 boincer umatlas       100 Oct 11 22:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 01:53:24] -rwxr-xr-x 1 boincer umatlas      7986 Oct 11 22:34 run_atlas
[2025-10-12 01:53:24] -rw-r--r-- 1 boincer umatlas       105 Oct 11 22:34 job.xml
[2025-10-12 01:53:24] -rw-r--r-- 3 boincer umatlas 221500851 Oct 11 22:34 EVNT.46676267._002617.pool.root.1
[2025-10-12 01:53:24] -rw-r--r-- 3 boincer umatlas 221500851 Oct 11 22:34 ATLAS.root_0
[2025-10-12 01:53:24] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 22:34 start_atlas.sh
[2025-10-12 01:53:24] drwxrwx--x 2 boincer umatlas      4096 Oct 11 22:34 shared
[2025-10-12 01:53:24] -rw-r--r-- 2 boincer umatlas    569674 Oct 11 22:34 input.tar.gz
[2025-10-12 01:53:24] -rw-r--r-- 1 boincer umatlas         0 Oct 11 22:34 boinc_lockfile
[2025-10-12 01:53:24] -rw-r--r-- 1 boincer umatlas      2550 Oct 11 23:46 pandaJob.out
[2025-10-12 01:53:24] -rw------- 1 boincer umatlas    975512 Oct 11 23:46 agis_schedconf.cvmfs.json
[2025-10-12 01:53:24] -rw-r--r-- 1 boincer umatlas      5911 Oct 12 01:46 init_data.xml
[2025-10-12 01:53:24] -rw------- 1 boincer umatlas 198175775 Oct 12 01:52 HITS.46676269._065182.pool.root.1
[2025-10-12 01:53:24] -rw-r--r-- 1 boincer umatlas       530 Oct 12 01:52 boinc_task_state.xml
[2025-10-12 01:53:24] -rw------- 1 boincer umatlas      1049 Oct 12 01:52 memory_monitor_summary.json
[2025-10-12 01:53:24] -rw------- 1 boincer umatlas        96 Oct 12 01:52 pilot_heartbeat.json
[2025-10-12 01:53:24] -rw------- 1 boincer umatlas   1560580 Oct 12 01:52 agis_ddmendpoints.agis.ALL.json
[2025-10-12 01:53:24] -rw------- 1 boincer umatlas    381385 Oct 12 01:52 log.46676269._065182.job.log.tgz.1
[2025-10-12 01:53:24] -rw------- 1 boincer umatlas      7844 Oct 12 01:52 heartbeat.json
[2025-10-12 01:53:24] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 01:53 boinc_mmap_file
[2025-10-12 01:53:24] -rw-r--r-- 1 boincer umatlas        28 Oct 12 01:53 wrapper_checkpoint.txt
[2025-10-12 01:53:24] -rw------- 1 boincer umatlas       745 Oct 12 01:53 pilotlog.txt
[2025-10-12 01:53:24] -rw------- 1 boincer umatlas   1064908 Oct 12 01:53 log.46676269._065182.job.log.1
[2025-10-12 01:53:24] -rw------- 1 boincer umatlas       357 Oct 12 01:53 output.list
[2025-10-12 01:53:24] -rw-r--r-- 1 boincer umatlas       620 Oct 12 01:53 runtime_log
[2025-10-12 01:53:24] -rw------- 1 boincer umatlas   1464320 Oct 12 01:53 result.tar.gz
[2025-10-12 01:53:24] -rw-r--r-- 1 boincer umatlas      8788 Oct 12 01:53 runtime_log.err
[2025-10-12 01:53:24] -rw------- 1 boincer umatlas       784 Oct 12 01:53 4lnMDm88vR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmgcSMDm4Qrn2n.diag
[2025-10-12 01:53:24] -rw-r--r-- 1 boincer umatlas     22998 Oct 12 01:53 stderr.txt
[2025-10-12 01:53:24] HITS file was successfully produced:
[2025-10-12 01:53:24] -rw------- 1 boincer umatlas 198175775 Oct 12 01:52 shared/HITS.pool.root.1
[2025-10-12 01:53:24]  *** Contents of shared directory: ***
[2025-10-12 01:53:24] total 411852
[2025-10-12 01:53:24] -rw-r--r-- 3 boincer umatlas 221500851 Oct 11 22:34 ATLAS.root_0
[2025-10-12 01:53:24] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 22:34 start_atlas.sh
[2025-10-12 01:53:24] -rw-r--r-- 2 boincer umatlas    569674 Oct 11 22:34 input.tar.gz
[2025-10-12 01:53:24] -rw------- 1 boincer umatlas 198175775 Oct 12 01:52 HITS.pool.root.1
[2025-10-12 01:53:24] -rw------- 1 boincer umatlas   1464320 Oct 12 01:53 result.tar.gz
01:53:26 (28889): run_atlas exited; CPU time 56344.940819
01:53:26 (28889): called boinc_finish(0)

</stderr_txt>
]]>

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