Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:52:26 (2656507): wrapper (7.7.26015): starting
14:52:26 (2656507): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 14:52:26] Arguments: --nthreads 3
[2025-10-12 14:52:26] Threads: 3
[2025-10-12 14:52:26] Checking for CVMFS
[2025-10-12 14:52:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 14:52:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 14:52:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 14:52:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 14:52:26] 2.9.2.0 233307 4371 64980 151620 3 57 2913821 36864001 0 130560 0 3192660 99.990 146621 859 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 14:52:26] CVMFS is ok
[2025-10-12 14:52:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 14:52:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 14:52:26] Further information can be found at the LHC@home message board.
[2025-10-12 14:52:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 14:52:26] Checking for apptainer binary...
[2025-10-12 14:52:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 14:52:26] Running /usr/bin/apptainer --version
[2025-10-12 14:52:26] apptainer version 1.4.1-1.1
[2025-10-12 14:52:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 14:52:26] atlasA221b
[2025-10-12 14:52:26] apptainer works
[2025-10-12 14:52:26] Set ATHENA_PROC_NUMBER=3
[2025-10-12 14:52:26] Set ATHENA_CORE_NUMBER=3
[2025-10-12 14:52:26] Starting ATLAS job with PandaID=6838988771
[2025-10-12 14:52:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 16:31:03]  *** The last 200 lines of the pilot log: ***
[2025-10-12 16:31:03] 2025-10-12 14:30:32,880 | INFO     | did not find any defunct processes belonging to 2666806
[2025-10-12 16:31:03] 2025-10-12 14:30:32,882 | INFO     | did not find any defunct processes belonging to 2666806
[2025-10-12 16:31:03] 2025-10-12 14:30:32,882 | INFO     | ready for new job
[2025-10-12 16:31:03] 2025-10-12 14:30:32,882 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 16:31:03] 2025-10-12 14:30:32,883 | INFO     | ***************************************
[2025-10-12 16:31:03] 2025-10-12 14:30:32,883 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 16:31:03] 2025-10-12 14:30:32,883 | INFO     | ***************************************
[2025-10-12 16:31:03] 2025-10-12 14:30:32,883 | INFO     | 
[2025-10-12 16:31:03] 2025-10-12 14:30:32,883 | INFO     | architecture information:
[2025-10-12 16:31:03] 2025-10-12 14:30:32,883 | INFO     | executing command: cat /etc/os-release
[2025-10-12 16:31:03] 2025-10-12 14:30:32,892 | INFO     | cat /etc/os-release:
[2025-10-12 16:31:03] NAME="CentOS Linux"
[2025-10-12 16:31:03] VERSION="7 (Core)"
[2025-10-12 16:31:03] ID="centos"
[2025-10-12 16:31:03] ID_LIKE="rhel fedora"
[2025-10-12 16:31:03] VERSION_ID="7"
[2025-10-12 16:31:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 16:31:03] ANSI_COLOR="0;31"
[2025-10-12 16:31:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 16:31:03] HOME_URL="https://www.centos.org/"
[2025-10-12 16:31:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 16:31:03] 
[2025-10-12 16:31:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 16:31:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 16:31:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 16:31:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 16:31:03] 
[2025-10-12 16:31:03] 2025-10-12 14:30:32,893 | INFO     | ***************************************
[2025-10-12 16:31:03] 2025-10-12 14:30:33,395 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 16:31:03] 2025-10-12 14:30:33,406 | INFO     | sufficient remaining disk space (357796151296 B)
[2025-10-12 16:31:03] 2025-10-12 14:30:33,406 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 16:31:03] 2025-10-12 14:30:33,406 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 16:31:03] 2025-10-12 14:30:33,406 | INFO     | update_server=False
[2025-10-12 16:31:03] 2025-10-12 14:30:33,406 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 16:31:03] 2025-10-12 14:30:33,406 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:31:03] 2025-10-12 14:30:33,406 | INFO     | aborting loop
[2025-10-12 16:31:03] 2025-10-12 14:30:33,406 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:31:03] 2025-10-12 14:30:33,428 | INFO     | all data control threads have been joined
[2025-10-12 16:31:03] 2025-10-12 14:30:33,888 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 16:31:03] 2025-10-12 14:30:33,889 | INFO     | all payload control threads have been joined
[2025-10-12 16:31:03] 2025-10-12 14:30:34,326 | INFO     | all job control threads have been joined
[2025-10-12 16:31:03] 2025-10-12 14:30:34,412 | INFO     | [job] retrieve thread has finished
[2025-10-12 16:31:03] 2025-10-12 14:30:34,413 | INFO     | [job] queue monitor thread has finished
[2025-10-12 16:31:03] 2025-10-12 14:30:34,413 | INFO     | [job] job monitor thread has finished
[2025-10-12 16:31:03] 2025-10-12 14:30:34,416 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 16:31:03] 2025-10-12 14:30:34,434 | INFO     | [data] control thread has finished
[2025-10-12 16:31:03] 2025-10-12 14:30:34,894 | INFO     | [payload] control thread has finished
[2025-10-12 16:31:03] 2025-10-12 14:30:35,010 | INFO     | [job] validate thread has finished
[2025-10-12 16:31:03] 2025-10-12 14:30:35,096 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 16:31:03] 2025-10-12 14:30:35,098 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 16:31:03] 2025-10-12 14:30:35,176 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 16:31:03] 2025-10-12 14:30:35,332 | INFO     | [job] control thread has finished
[2025-10-12 16:31:03] 2025-10-12 14:30:35,380 | INFO     | [data] copytool_in thread has finished
[2025-10-12 16:31:03] 2025-10-12 14:30:35,707 | INFO     | [payload] validate_post thread has finished
[2025-10-12 16:31:03] 2025-10-12 14:30:35,864 | INFO     | [payload] failed_post thread has finished
[2025-10-12 16:31:03] 2025-10-12 14:30:35,894 | INFO     | [data] copytool_out thread has finished
[2025-10-12 16:31:03] 2025-10-12 14:30:38,423 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 16:31:03] 2025-10-12 14:30:43,358 | INFO     | [monitor] cgroup control has ended
[2025-10-12 16:31:03] 2025-10-12 14:30:43,554 | INFO     | job.realtimelogging is not enabled
[2025-10-12 16:31:03] 2025-10-12 14:30:44,560 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 16:31:03] 2025-10-12 14:30:46,492 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139669152130880)>', '<ExcThread(monitor, started 139668444149504)>']
[2025-10-12 16:31:03] 2025-10-12 14:30:51,516 | INFO     | all workflow threads have been joined
[2025-10-12 16:31:03] 2025-10-12 14:30:51,517 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 16:31:03] 2025-10-12 14:30:51,517 | INFO     | traces error code: 0
[2025-10-12 16:31:03] 2025-10-12 14:30:51,518 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 16:31:03] 2025-10-12 14:31:03,859 | INFO     | PID=2660256 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 16:31:03] 2025-10-12 14:31:03,859 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 16:31:03] 2025-10-12 14:31:03,859 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 16:31:03] 2025-10-12 14:31:03,859 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 16:31:03] 2025-10-12 14:31:03,859 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 16:31:03] 2025-10-12 14:31:03,859 | CRITICAL | thread 'MainThread' is not alive
[2025-10-12 16:31:03] 2025-10-12 14:31:03,859 | INFO     | [monitor] control thread has ended
[2025-10-12 16:31:03] 2025-10-12 14:31:03,907 [wrapper] ==== pilot stdout END ====
[2025-10-12 16:31:03] 2025-10-12 14:31:03,910 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 16:31:03] 2025-10-12 14:31:03,912 [wrapper] pilotpid: 2660256
[2025-10-12 16:31:03] 2025-10-12 14:31:03,915 [wrapper] Pilot exit status: 0
[2025-10-12 16:31:03] 2025-10-12 14:31:03,922 [wrapper] pandaids: 6838988771
[2025-10-12 16:31:03] 2025-10-12 14:31:03,943 [wrapper] cleanup supervisor_pilot 2705841 2660257
[2025-10-12 16:31:03] 2025-10-12 14:31:03,945 [wrapper] Test setup, not cleaning
[2025-10-12 16:31:03] 2025-10-12 14:31:03,948 [wrapper] apfmon messages muted
[2025-10-12 16:31:03] 2025-10-12 14:31:03,951 [wrapper] ==== wrapper stdout END ====
[2025-10-12 16:31:03] 2025-10-12 14:31:03,954 [wrapper] ==== wrapper stderr END ====
[2025-10-12 16:31:03]  *** Error codes and diagnostics ***
[2025-10-12 16:31:03]     "exeErrorCode": 0,
[2025-10-12 16:31:03]     "exeErrorDiag": "",
[2025-10-12 16:31:03]     "pilotErrorCode": 0,
[2025-10-12 16:31:03]     "pilotErrorDiag": "",
[2025-10-12 16:31:03]  *** Listing of results directory ***
[2025-10-12 16:31:03] total 417044
[2025-10-12 16:31:03] -rw-r--r-- 1 boinc boinc    557409 Oct 11 23:13 pilot3.tar.gz
[2025-10-12 16:31:03] -rwx------ 1 boinc boinc     36292 Oct 11 23:17 runpilot2-wrapper.sh
[2025-10-12 16:31:03] -rw-r--r-- 1 boinc boinc      5112 Oct 11 23:17 queuedata.json
[2025-10-12 16:31:03] -rw-r--r-- 1 boinc boinc       100 Oct 12 14:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 16:31:03] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 14:52 run_atlas
[2025-10-12 16:31:03] -rw-r--r-- 1 boinc boinc       105 Oct 12 14:52 job.xml
[2025-10-12 16:31:03] -rw-r--r-- 2 boinc boinc 220274204 Oct 12 14:52 EVNT.46676267._002618.pool.root.1
[2025-10-12 16:31:03] -rw-r--r-- 2 boinc boinc    569675 Oct 12 14:52 input.tar.gz
[2025-10-12 16:31:03] -rw-r--r-- 2 boinc boinc     15120 Oct 12 14:52 start_atlas.sh
[2025-10-12 16:31:03] drwxrwx--x 2 boinc boinc      4096 Oct 12 14:52 shared
[2025-10-12 16:31:03] -rw-r--r-- 1 boinc boinc         0 Oct 12 14:52 boinc_setup_complete
[2025-10-12 16:31:03] -rw-r--r-- 1 boinc boinc      6197 Oct 12 14:52 init_data.xml
[2025-10-12 16:31:03] -rw-r--r-- 1 boinc boinc         0 Oct 12 14:52 boinc_lockfile
[2025-10-12 16:31:03] -rw-r--r-- 1 boinc boinc      2550 Oct 12 14:52 pandaJob.out
[2025-10-12 16:31:03] -rw------- 1 boinc boinc    975512 Oct 12 14:52 agis_schedconf.cvmfs.json
[2025-10-12 16:31:03] -rw------- 1 boinc boinc   1560580 Oct 12 14:52 agis_ddmendpoints.agis.ALL.json
[2025-10-12 16:31:03] drwx------ 5 boinc boinc      4096 Oct 12 14:52 pilot3
[2025-10-12 16:31:03] -rw------- 1 boinc boinc 200629403 Oct 12 16:30 HITS.46676269._065203.pool.root.1
[2025-10-12 16:31:03] -rw------- 1 boinc boinc        95 Oct 12 16:30 pilot_heartbeat.json
[2025-10-12 16:31:03] -rw-r--r-- 1 boinc boinc       529 Oct 12 16:30 boinc_task_state.xml
[2025-10-12 16:31:03] -rw------- 1 boinc boinc      1028 Oct 12 16:30 memory_monitor_summary.json
[2025-10-12 16:31:03] -rw------- 1 boinc boinc    278904 Oct 12 16:30 log.46676269._065203.job.log.tgz.1
[2025-10-12 16:31:03] -rw------- 1 boinc boinc      7779 Oct 12 16:30 heartbeat.json
[2025-10-12 16:31:03] -rw-r--r-- 1 boinc boinc      8192 Oct 12 16:30 boinc_mmap_file
[2025-10-12 16:31:03] -rw-r--r-- 1 boinc boinc        27 Oct 12 16:30 wrapper_checkpoint.txt
[2025-10-12 16:31:03] -rw------- 1 boinc boinc       817 Oct 12 16:31 pilotlog.txt
[2025-10-12 16:31:03] -rw------- 1 boinc boinc    852303 Oct 12 16:31 log.46676269._065203.job.log.1
[2025-10-12 16:31:03] -rw------- 1 boinc boinc       357 Oct 12 16:31 output.list
[2025-10-12 16:31:03] -rw-r--r-- 1 boinc boinc       620 Oct 12 16:31 runtime_log
[2025-10-12 16:31:03] -rw------- 1 boinc boinc   1146880 Oct 12 16:31 result.tar.gz
[2025-10-12 16:31:03] -rw-r--r-- 1 boinc boinc      8797 Oct 12 16:31 runtime_log.err
[2025-10-12 16:31:03] -rw------- 1 boinc boinc       663 Oct 12 16:31 KG8MDm88vR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmkcSMDmAgIi9m.diag
[2025-10-12 16:31:03] -rw-r--r-- 1 boinc boinc      9943 Oct 12 16:31 stderr.txt
[2025-10-12 16:31:04] HITS file was successfully produced:
[2025-10-12 16:31:04] -rw------- 1 boinc boinc 200629403 Oct 12 16:30 shared/HITS.pool.root.1
[2025-10-12 16:31:04]  *** Contents of shared directory: ***
[2025-10-12 16:31:04] total 412744
[2025-10-12 16:31:04] -rw-r--r-- 2 boinc boinc 220274204 Oct 12 14:52 ATLAS.root_0
[2025-10-12 16:31:04] -rw-r--r-- 2 boinc boinc    569675 Oct 12 14:52 input.tar.gz
[2025-10-12 16:31:04] -rw-r--r-- 2 boinc boinc     15120 Oct 12 14:52 start_atlas.sh
[2025-10-12 16:31:04] -rw------- 1 boinc boinc 200629403 Oct 12 16:30 HITS.pool.root.1
[2025-10-12 16:31:04] -rw------- 1 boinc boinc   1146880 Oct 12 16:31 result.tar.gz
16:31:05 (2656507): run_atlas exited; CPU time 16924.418642
16:31:05 (2656507): called boinc_finish(0)

</stderr_txt>
]]>

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