Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:47:43 (3357100): wrapper (7.7.26015): starting
22:47:43 (3357100): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 22:47:43] Arguments: --nthreads 8
[2025-10-11 22:47:43] Threads: 8
[2025-10-11 22:47:43] Checking for CVMFS
[2025-10-11 22:47:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 22:47:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 22:47:44] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 22:47:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 22:47:46] 2.13.2.0 552491 36427 154688 151604 2 603 30922465 40960000 61143 16776704 0 384510076 99.796 200260074 32507 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 22:47:46] CVMFS is ok
[2025-10-11 22:47:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 22:47:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 22:47:46] Further information can be found at the LHC@home message board.
[2025-10-11 22:47:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 22:47:46] Checking for apptainer binary...
[2025-10-11 22:47:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 22:47:46] Running /usr/bin/apptainer --version
[2025-10-11 22:47:46] apptainer version 1.4.3-1.el9
[2025-10-11 22:47:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 22:47:46] c8-7-5.aglt2.org
[2025-10-11 22:47:46] apptainer works
[2025-10-11 22:47:46] Set ATHENA_PROC_NUMBER=8
[2025-10-11 22:47:46] Set ATHENA_CORE_NUMBER=8
[2025-10-11 22:47:46] Starting ATLAS job with PandaID=6838849735
[2025-10-11 22:47:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:00:14 (3357100): BOINC client no longer exists - exiting
23:00:14 (3357100): timer handler: client dead, exiting
23:09:27 (3488048): wrapper (7.7.26015): starting
23:09:27 (3488048): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 23:09:27] Arguments: --nthreads 8
[2025-10-11 23:09:27] Threads: 8
[2025-10-11 23:09:27] This job has been restarted, cleaning up previous attempt
[2025-10-11 23:09:28] Checking for CVMFS
[2025-10-11 23:09:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 23:09:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 23:09:28] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 23:09:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 23:09:28] 2.13.2.0 552491 36449 161948 151604 0 704 31012705 40960000 57779 16776704 0 384710003 99.796 200289862 32508 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 23:09:28] CVMFS is ok
[2025-10-11 23:09:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 23:09:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 23:09:28] Further information can be found at the LHC@home message board.
[2025-10-11 23:09:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 23:09:28] Checking for apptainer binary...
[2025-10-11 23:09:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 23:09:28] Running /usr/bin/apptainer --version
[2025-10-11 23:09:28] apptainer version 1.4.3-1.el9
[2025-10-11 23:09:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 23:09:29] c8-7-5.aglt2.org
[2025-10-11 23:09:29] apptainer works
[2025-10-11 23:09:29] Set ATHENA_PROC_NUMBER=8
[2025-10-11 23:09:29] Set ATHENA_CORE_NUMBER=8
[2025-10-11 23:09:29] Starting ATLAS job with PandaID=6838849735
[2025-10-11 23:09:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 01:52:56]  *** The last 200 lines of the pilot log: ***
[2025-10-12 01:52:56] 2025-10-12 05:38:40,579 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 01:52:56] 2025-10-12 05:38:40,579 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 01:52:56] 2025-10-12 05:38:40,580 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 01:52:56] 2025-10-12 05:38:40,581 | INFO     | fitting pss+swap vs Time
[2025-10-12 01:52:56] 2025-10-12 05:38:40,581 | INFO     | sum of square deviations: 945326437.7931049
[2025-10-12 01:52:56] 2025-10-12 05:38:40,582 | INFO     | sum of deviations: 13080230317.724142
[2025-10-12 01:52:56] 2025-10-12 05:38:40,582 | INFO     | mean x: 1760243044.2068965
[2025-10-12 01:52:56] 2025-10-12 05:38:40,582 | INFO     | mean y: 2362518.875862069
[2025-10-12 01:52:56] 2025-10-12 05:38:40,582 | INFO     | -- intersect: -24353651988.82082
[2025-10-12 01:52:56] 2025-10-12 05:38:40,582 | INFO     | intersect: -24353651988.82082
[2025-10-12 01:52:56] 2025-10-12 05:38:40,582 | INFO     | chi2: 1.9901458457914536
[2025-10-12 01:52:56] 2025-10-12 05:38:40,582 | INFO     | sum of square deviations: 850878002.571431
[2025-10-12 01:52:56] 2025-10-12 05:38:40,582 | INFO     | sum of deviations: 20839599210.857147
[2025-10-12 01:52:56] 2025-10-12 05:38:40,595 | INFO     | mean x: 1760242891.7142856
[2025-10-12 01:52:56] 2025-10-12 05:38:40,595 | INFO     | mean y: 2374659.4214285715
[2025-10-12 01:52:56] 2025-10-12 05:38:40,596 | INFO     | -- intersect: -43109277382.61902
[2025-10-12 01:52:56] 2025-10-12 05:38:40,596 | INFO     | intersect: -43109277382.61902
[2025-10-12 01:52:56] 2025-10-12 05:38:40,596 | INFO     | chi2: 1.2887338206605747
[2025-10-12 01:52:56] 2025-10-12 05:38:40,596 | INFO     | current chi2=1.2887338206605747 (change=35.24425240562895 %)
[2025-10-12 01:52:56] 2025-10-12 05:38:40,596 | INFO     | sum of square deviations: 762932654.7703701
[2025-10-12 01:52:56] 2025-10-12 05:38:40,596 | INFO     | sum of deviations: 20061445258.281483
[2025-10-12 01:52:56] 2025-10-12 05:38:40,596 | INFO     | mean x: 1760242739.214815
[2025-10-12 01:52:56] 2025-10-12 05:38:40,596 | INFO     | mean y: 2373310.059259259
[2025-10-12 01:52:56] 2025-10-12 05:38:40,596 | INFO     | -- intersect: -46283511994.81615
[2025-10-12 01:52:56] 2025-10-12 05:38:40,596 | INFO     | intersect: -46283511994.81615
[2025-10-12 01:52:56] 2025-10-12 05:38:40,597 | INFO     | chi2: 1.289367380830894
[2025-10-12 01:52:56] 2025-10-12 05:38:40,597 | INFO     | current chi2=1.289367380830894 (change=-0.04916144514579428 %)
[2025-10-12 01:52:56] 2025-10-12 05:38:40,597 | INFO     | right removable region: 134
[2025-10-12 01:52:56] 2025-10-12 05:38:40,597 | INFO     | sum of square deviations: 850859702.571431
[2025-10-12 01:52:56] 2025-10-12 05:38:40,597 | INFO     | sum of deviations: -5944379679.142857
[2025-10-12 01:52:56] 2025-10-12 05:38:40,597 | INFO     | mean x: 1760243196.7142856
[2025-10-12 01:52:56] 2025-10-12 05:38:40,597 | INFO     | mean y: 2392721.8214285714
[2025-10-12 01:52:56] 2025-10-12 05:38:40,597 | INFO     | -- intersect: 12300018120.315874
[2025-10-12 01:52:56] 2025-10-12 05:38:40,597 | INFO     | intersect: 12300018120.315874
[2025-10-12 01:52:56] 2025-10-12 05:38:40,597 | INFO     | chi2: 0.7247953955915961
[2025-10-12 01:52:56] 2025-10-12 05:38:40,598 | INFO     | current chi2=0.7247953955915961 (change=63.580789964498564 %)
[2025-10-12 01:52:56] 2025-10-12 05:38:40,598 | INFO     | sum of square deviations: 762904717.3333327
[2025-10-12 01:52:56] 2025-10-12 05:38:40,598 | INFO     | sum of deviations: -6654637079.111112
[2025-10-12 01:52:56] 2025-10-12 05:38:40,598 | INFO     | mean x: 1760243349.2222223
[2025-10-12 01:52:56] 2025-10-12 05:38:40,598 | INFO     | mean y: 2393946.7703703702
[2025-10-12 01:52:56] 2025-10-12 05:38:40,598 | INFO     | -- intersect: 15356579592.570852
[2025-10-12 01:52:56] 2025-10-12 05:38:40,598 | INFO     | intersect: 15356579592.570852
[2025-10-12 01:52:56] 2025-10-12 05:38:40,598 | INFO     | chi2: 0.7236757964279159
[2025-10-12 01:52:56] 2025-10-12 05:38:40,598 | INFO     | current chi2=0.7236757964279159 (change=0.1544710645914579 %)
[2025-10-12 01:52:56] 2025-10-12 05:38:40,598 | INFO     | left removable region: 20
[2025-10-12 01:52:56] 2025-10-12 05:38:40,598 | INFO     | sum of square deviations: 459418325.0175436
[2025-10-12 01:52:56] 2025-10-12 05:38:40,599 | INFO     | sum of deviations: 423663236.4912281
[2025-10-12 01:52:56] 2025-10-12 05:38:40,599 | INFO     | mean x: 1760243318.7192984
[2025-10-12 01:52:56] 2025-10-12 05:38:40,611 | INFO     | mean y: 2409702.6403508773
[2025-10-12 01:52:56] 2025-10-12 05:38:40,611 | INFO     | -- intersect: -1620839394.7747352
[2025-10-12 01:52:56] 2025-10-12 05:38:40,611 | INFO     | intersect: -1620839394.7747352
[2025-10-12 01:52:56] 2025-10-12 05:38:40,611 | INFO     | chi2: 0.0003777856103289429
[2025-10-12 01:52:56] 2025-10-12 05:38:40,612 | INFO     | -- intersect: -1620839394.7747352
[2025-10-12 01:52:56] 2025-10-12 05:38:40,612 | INFO     | current memory leak: 0.92 B/s (using 114 data points, chi2=0.00)
[2025-10-12 01:52:56] 2025-10-12 05:38:40,623 | INFO     | could have reported an average CPU frequency of 3799 MHz (8 samples)
[2025-10-12 01:52:56] 2025-10-12 05:38:40,623 | INFO     | ..............................
[2025-10-12 01:52:56] 2025-10-12 05:38:40,623 | INFO     | . Timing measurements:
[2025-10-12 01:52:56] 2025-10-12 05:38:40,623 | INFO     | . get job = 0 s
[2025-10-12 01:52:56] 2025-10-12 05:38:40,623 | INFO     | . initial setup = 1 s
[2025-10-12 01:52:56] 2025-10-12 05:38:40,623 | INFO     | . payload setup = 15 s
[2025-10-12 01:52:56] 2025-10-12 05:38:40,623 | INFO     | . stage-in = 0 s
[2025-10-12 01:52:56] 2025-10-12 05:38:40,623 | INFO     | . payload execution = 8831 s
[2025-10-12 01:52:56] 2025-10-12 05:38:40,623 | INFO     | . stage-out = 3 s
[2025-10-12 01:52:56] 2025-10-12 05:38:40,623 | INFO     | . log creation = 0 s
[2025-10-12 01:52:56] 2025-10-12 05:38:40,623 | INFO     | ..............................
[2025-10-12 01:52:56] 2025-10-12 05:38:41,377 | INFO     | 
[2025-10-12 01:52:56] 2025-10-12 05:38:41,377 | INFO     | job summary report
[2025-10-12 01:52:56] 2025-10-12 05:38:41,377 | INFO     | --------------------------------------------------
[2025-10-12 01:52:56] 2025-10-12 05:38:41,377 | INFO     | PanDA job id: 6838849735
[2025-10-12 01:52:56] 2025-10-12 05:38:41,377 | INFO     | task id: 46676269
[2025-10-12 01:52:56] 2025-10-12 05:38:41,377 | INFO     | errors: (none)
[2025-10-12 01:52:56] 2025-10-12 05:38:41,378 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 01:52:56] 2025-10-12 05:38:41,378 | INFO     | pilot state: finished 
[2025-10-12 01:52:56] 2025-10-12 05:38:41,378 | INFO     | transexitcode: 0
[2025-10-12 01:52:56] 2025-10-12 05:38:41,378 | INFO     | exeerrorcode: 0
[2025-10-12 01:52:56] 2025-10-12 05:38:41,378 | INFO     | exeerrordiag: 
[2025-10-12 01:52:56] 2025-10-12 05:38:41,378 | INFO     | exitcode: 0
[2025-10-12 01:52:56] 2025-10-12 05:38:41,378 | INFO     | exitmsg: OK
[2025-10-12 01:52:56] 2025-10-12 05:38:41,378 | INFO     | cpuconsumptiontime: 22399 s
[2025-10-12 01:52:56] 2025-10-12 05:38:41,378 | INFO     | nevents: 400
[2025-10-12 01:52:56] 2025-10-12 05:38:41,378 | INFO     | neventsw: 0
[2025-10-12 01:52:56] 2025-10-12 05:38:41,378 | INFO     | pid: 3584147
[2025-10-12 01:52:56] 2025-10-12 05:38:41,378 | INFO     | pgrp: 3584147
[2025-10-12 01:52:56] 2025-10-12 05:38:41,378 | INFO     | corecount: 8
[2025-10-12 01:52:56] 2025-10-12 05:38:41,378 | INFO     | event service: False
[2025-10-12 01:52:56] 2025-10-12 05:38:41,378 | INFO     | sizes: {0: 2348857, 1: 2348885, 11: 2349175, 22: 2349175, 8850: 2377024, 8854: 2386022, 8857: 2386206, 8900: 2386400}
[2025-10-12 01:52:56] 2025-10-12 05:38:41,378 | INFO     | --------------------------------------------------
[2025-10-12 01:52:56] 2025-10-12 05:38:41,378 | INFO     | 
[2025-10-12 01:52:56] 2025-10-12 05:38:41,378 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-10-12 01:52:56] 2025-10-12 05:38:41,466 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 01:52:56] 2025-10-12 05:38:41,466 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 01:52:56] 2025-10-12 05:38:41,466 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 01:52:56] 2025-10-12 05:38:41,466 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 01:52:56] 2025-10-12 05:38:41,467 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 01:52:56] 2025-10-12 05:38:41,467 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 01:52:56] 2025-10-12 05:38:41,467 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 01:52:56] 2025-10-12 05:38:41,467 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 01:52:56] 2025-10-12 05:38:41,467 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 01:52:56] 2025-10-12 05:38:41,467 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 01:52:56] 2025-10-12 05:38:41,467 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 01:52:56] 2025-10-12 05:38:41,467 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 01:52:56] 2025-10-12 05:38:41,467 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 01:52:56] 2025-10-12 05:38:41,467 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 01:52:56] 2025-10-12 05:38:41,467 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 01:52:56] 2025-10-12 05:38:41,467 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 01:52:56] 2025-10-12 05:38:41,467 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 01:52:56] 2025-10-12 05:38:41,467 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 01:52:56] 2025-10-12 05:38:41,467 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 01:52:56] 2025-10-12 05:38:41,467 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 01:52:56] 2025-10-12 05:38:41,467 | INFO     | job 6838849735 has completed (purged errors)
[2025-10-12 01:52:56] 2025-10-12 05:38:41,467 | INFO     | overall cleanup function is called
[2025-10-12 01:52:56] 2025-10-12 05:38:42,494 | INFO     | --- collectZombieJob: --- 10, [3584147]
[2025-10-12 01:52:56] 2025-10-12 05:38:42,494 | INFO     | zombie collector waiting for pid 3584147
[2025-10-12 01:52:56] 2025-10-12 05:38:42,494 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 01:52:56] 2025-10-12 05:38:42,494 | INFO     | collected zombie processes
[2025-10-12 01:52:56] 2025-10-12 05:38:42,494 | INFO     | will attempt to kill all subprocesses of pid=3584147
[2025-10-12 01:52:56] 2025-10-12 05:38:47,262 | INFO     | process IDs to be killed: [3584147] (in reverse order)
[2025-10-12 01:52:56] 2025-10-12 05:38:48,254 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 01:52:56] 2025-10-12 05:38:48,254 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 01:52:56] 2025-10-12 05:38:48,417 | INFO     | did not find any defunct processes belonging to 3584147
[2025-10-12 01:52:56] 2025-10-12 05:38:48,589 | INFO     | did not find any defunct processes belonging to 3584147
[2025-10-12 01:52:56] 2025-10-12 05:38:48,590 | INFO     | ready for new job
[2025-10-12 01:52:56] 2025-10-12 05:38:48,590 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 01:52:56] 2025-10-12 05:38:48,612 | INFO     | ***************************************
[2025-10-12 01:52:56] 2025-10-12 05:38:48,613 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 01:52:56] 2025-10-12 05:38:48,613 | INFO     | ***************************************
[2025-10-12 01:52:56] 2025-10-12 05:38:48,613 | INFO     | 
[2025-10-12 01:52:56] 2025-10-12 05:38:48,621 | INFO     | architecture information:
[2025-10-12 01:52:56] 2025-10-12 05:38:48,630 | INFO     | executing command: cat /etc/os-release
[2025-10-12 01:52:56] 2025-10-12 05:38:48,686 | INFO     | cat /etc/os-release:
[2025-10-12 01:52:56] NAME="CentOS Linux"
[2025-10-12 01:52:56] VERSION="7 (Core)"
[2025-10-12 01:52:56] ID="centos"
[2025-10-12 01:52:56] ID_LIKE="rhel fedora"
[2025-10-12 01:52:56] VERSION_ID="7"
[2025-10-12 01:52:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 01:52:56] ANSI_COLOR="0;31"
[2025-10-12 01:52:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 01:52:56] HOME_URL="https://www.centos.org/"
[2025-10-12 01:52:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 01:52:56] 
[2025-10-12 01:52:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 01:52:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 01:52:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 01:52:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 01:52:56] 
[2025-10-12 01:52:56] 2025-10-12 05:38:48,686 | INFO     | ***************************************
[2025-10-12 01:52:56] 2025-10-12 05:38:49,192 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-10-12 01:52:56] 2025-10-12 05:38:49,355 | INFO     | sufficient remaining disk space (164947296256 B)
[2025-10-12 01:52:56] 2025-10-12 05:38:49,356 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 01:52:56] 2025-10-12 05:38:49,356 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 01:52:56] 2025-10-12 05:38:49,356 | INFO     | update_server=False
[2025-10-12 01:52:56] 2025-10-12 05:38:49,356 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 01:52:56] 2025-10-12 05:38:49,356 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 01:52:56] 2025-10-12 05:38:49,359 | INFO     | all data control threads have been joined
[2025-10-12 01:52:56] 2025-10-12 05:38:49,807 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 01:52:56] 2025-10-12 05:38:50,008 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 01:52:56] 2025-10-12 05:38:50,008 | INFO     | aborting loop
[2025-10-12 01:52:56] 2025-10-12 05:38:50,097 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 01:52:56] 2025-10-12 05:38:50,362 | INFO     | [job] retrieve thread has finished
[2025-10-12 01:52:56] 2025-10-12 05:38:50,372 | INFO     | [data] control thread has finished
[2025-10-12 01:52:56] 2025-10-12 05:38:50,491 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 01:52:56] 2025-10-12 05:38:50,856 | INFO     | all payload control threads have been joined
[2025-10-12 01:52:56] 2025-10-12 05:38:50,957 | INFO     | [payload] validate_post thread has finished
[2025-10-12 01:52:56] 2025-10-12 05:38:50,995 | INFO     | [job] validate thread has finished
[2025-10-12 01:52:56] 2025-10-12 05:38:50,995 | INFO     | [data] copytool_in thread has finished
[2025-10-12 01:52:56] 2025-10-12 05:38:51,014 | INFO     | [job] job monitor thread has finished
[2025-10-12 01:52:56] 2025-10-12 05:38:51,076 | INFO     | all job control threads have been joined
[2025-10-12 01:52:56] 2025-10-12 05:38:51,103 | INFO     | [job] queue monitor thread has finished
[2025-10-12 01:52:56] 2025-10-12 05:38:51,214 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 01:52:56] 2025-10-12 05:38:51,366 | INFO     | [data] copytool_out thread has finished
[2025-10-12 01:52:56] 2025-10-12 05:38:51,511 | INFO     | [payload] failed_post thread has finished
[2025-10-12 01:52:56] 2025-10-12 05:38:51,548 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 01:52:56] 2025-10-12 05:38:51,621 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 01:52:56] 2025-10-12 05:38:51,862 | INFO     | [payload] control thread has finished
[2025-10-12 01:52:56] 2025-10-12 05:38:52,089 | INFO     | [job] control thread has finished
[2025-10-12 01:52:56] 2025-10-12 05:38:53,816 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 01:52:56] 2025-10-12 05:39:04,777 | INFO     | [monitor] cgroup control has ended
[2025-10-12 01:52:56] 2025-10-12 05:39:06,791 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140441359062848)>', '<ExcThread(monitor, started 140440699385600)>']
[2025-10-12 01:52:56] 2025-10-12 05:39:11,817 | INFO     | all workflow threads have been joined
[2025-10-12 01:52:56] 2025-10-12 05:39:11,817 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 01:52:56] 2025-10-12 05:39:11,817 | INFO     | traces error code: 0
[2025-10-12 01:52:56] 2025-10-12 05:39:11,818 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 01:52:56] 2025-10-12 05:39:17,505 | INFO     | PID=3516639 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 01:52:56] 2025-10-12 05:39:17,506 | INFO     | .. there are 87 such processes running
[2025-10-12 01:52:56] 2025-10-12 05:39:17,506 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 01:52:56] 2025-10-12 05:39:17,506 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 01:52:56] 2025-10-12 05:39:17,506 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 01:52:56] 2025-10-12 05:39:17,506 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 01:52:56] 2025-10-12 05:39:17,506 | INFO     | [monitor] control thread has ended
[2025-10-12 01:52:56] 2025-10-12 05:39:18,061 [wrapper] ==== pilot stdout END ====
[2025-10-12 01:52:56] 2025-10-12 05:39:18,110 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 01:52:56] 2025-10-12 05:39:18,129 [wrapper] pilotpid: 3516639
[2025-10-12 01:52:56] 2025-10-12 05:39:18,153 [wrapper] Pilot exit status: 0
[2025-10-12 01:52:56] 2025-10-12 05:39:18,654 [wrapper] pandaids: 6838849735 6838849735
[2025-10-12 01:52:56] 2025-10-12 05:39:20,127 [wrapper] cleanup supervisor_pilot  738895 3516640
[2025-10-12 01:52:56] 2025-10-12 05:39:20,190 [wrapper] Test setup, not cleaning
[2025-10-12 01:52:56] 2025-10-12 05:39:20,244 [wrapper] apfmon messages muted
[2025-10-12 01:52:56] 2025-10-12 05:39:20,301 [wrapper] ==== wrapper stdout END ====
[2025-10-12 01:52:56] 2025-10-12 05:39:20,406 [wrapper] ==== wrapper stderr END ====
[2025-10-12 01:52:56]  *** Error codes and diagnostics ***
[2025-10-12 01:52:56]     "exeErrorCode": 0,
[2025-10-12 01:52:56]     "exeErrorDiag": "",
[2025-10-12 01:52:56]     "pilotErrorCode": 0,
[2025-10-12 01:52:56]     "pilotErrorDiag": "",
[2025-10-12 01:52:56]  *** Listing of results directory ***
[2025-10-12 01:52:56] total 622828
[2025-10-12 01:52:56] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-12 01:52:56] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 14:41 pilot3.tar.gz
[2025-10-12 01:52:56] -rwx------. 1 boincer umatlas     36292 Oct 11 14:45 runpilot2-wrapper.sh
[2025-10-12 01:52:56] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 14:45 queuedata.json
[2025-10-12 01:52:56] -rw-r--r--. 1 boincer umatlas       100 Oct 11 22:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 01:52:56] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 22:47 run_atlas
[2025-10-12 01:52:56] -rw-r--r--. 1 boincer umatlas       105 Oct 11 22:47 job.xml
[2025-10-12 01:52:56] -rw-r--r--. 3 boincer umatlas 221076098 Oct 11 22:47 EVNT.46676267._002530.pool.root.1
[2025-10-12 01:52:56] -rw-r--r--. 3 boincer umatlas 221076098 Oct 11 22:47 ATLAS.root_0
[2025-10-12 01:52:56] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 22:47 start_atlas.sh
[2025-10-12 01:52:56] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 22:47 shared
[2025-10-12 01:52:56] -rw-r--r--. 2 boincer umatlas    569675 Oct 11 22:47 input.tar.gz
[2025-10-12 01:52:56] -rw-r--r--. 1 boincer umatlas         0 Oct 11 22:47 boinc_lockfile
[2025-10-12 01:52:56] -rw-------. 1 boincer umatlas   1560580 Oct 11 22:48 agis_ddmendpoints.agis.ALL.json
[2025-10-12 01:52:56] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 23:09 pandaJob.out
[2025-10-12 01:52:56] -rw-------. 1 boincer umatlas    975496 Oct 11 23:09 agis_schedconf.cvmfs.json
[2025-10-12 01:52:56] -rw-------. 1 boincer umatlas 188905416 Oct 12 01:36 HITS.46676269._062997.pool.root.1
[2025-10-12 01:52:56] -rw-r--r--. 1 boincer umatlas       530 Oct 12 01:36 boinc_task_state.xml
[2025-10-12 01:52:56] -rw-r--r--. 1 boincer umatlas      7162 Oct 12 01:37 init_data.xml
[2025-10-12 01:52:56] -rw-------. 1 boincer umatlas      1051 Oct 12 01:37 memory_monitor_summary.json
[2025-10-12 01:52:56] -rw-------. 1 boincer umatlas    376514 Oct 12 01:37 log.46676269._062997.job.log.tgz.1
[2025-10-12 01:52:56] -rw-------. 1 boincer umatlas        96 Oct 12 01:38 pilot_heartbeat.json
[2025-10-12 01:52:56] -rw-------. 1 boincer umatlas      7800 Oct 12 01:38 heartbeat.json
[2025-10-12 01:52:56] -rw-------. 1 boincer umatlas       823 Oct 12 01:39 pilotlog.txt
[2025-10-12 01:52:56] -rw-------. 1 boincer umatlas   1031264 Oct 12 01:39 log.46676269._062997.job.log.1
[2025-10-12 01:52:56] -rw-------. 1 boincer umatlas       357 Oct 12 01:39 output.list
[2025-10-12 01:52:56] -rw-r--r--. 1 boincer umatlas       620 Oct 12 01:39 runtime_log
[2025-10-12 01:52:56] -rw-------. 1 boincer umatlas   1423360 Oct 12 01:39 result.tar.gz
[2025-10-12 01:52:56] -rw-r--r--. 1 boincer umatlas      8778 Oct 12 01:39 runtime_log.err
[2025-10-12 01:52:56] -rw-------. 1 boincer umatlas       781 Oct 12 01:39 1bqKDm5ltR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmtIhNDmdsBV4n.diag
[2025-10-12 01:52:56] -rw-r--r--. 1 boincer umatlas        27 Oct 12 01:52 wrapper_checkpoint.txt
[2025-10-12 01:52:56] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 01:52 boinc_mmap_file
[2025-10-12 01:52:56] -rw-r--r--. 1 boincer umatlas     23269 Oct 12 01:52 stderr.txt
[2025-10-12 01:52:56] HITS file was successfully produced:
[2025-10-12 01:52:56] -rw-------. 1 boincer umatlas 188905416 Oct 12 01:36 shared/HITS.pool.root.1
[2025-10-12 01:52:56]  *** Contents of shared directory: ***
[2025-10-12 01:52:56] total 402352
[2025-10-12 01:52:56] -rw-r--r--. 3 boincer umatlas 221076098 Oct 11 22:47 ATLAS.root_0
[2025-10-12 01:52:56] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 22:47 start_atlas.sh
[2025-10-12 01:52:56] -rw-r--r--. 2 boincer umatlas    569675 Oct 11 22:47 input.tar.gz
[2025-10-12 01:52:56] -rw-------. 1 boincer umatlas 188905416 Oct 12 01:36 HITS.pool.root.1
[2025-10-12 01:52:56] -rw-------. 1 boincer umatlas   1423360 Oct 12 01:39 result.tar.gz
01:52:58 (3488048): run_atlas exited; CPU time 22740.199729
01:52:58 (3488048): called boinc_finish(0)

</stderr_txt>
]]>

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